NO09G00430, NO09G00430 (gene) Nannochloropsis oceanica

Overview
NameNO09G00430
Unique NameNO09G00430
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2163
Alignment locationchr9:189749..191911 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:189749..191911 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO09G00430 vs. NCBI_GenBank
Match: EWM27758.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 273.9 bits (699), Expect = 9.800e-70
Identity = 188/475 (39.58%), Postives = 266/475 (56.00%), Query Frame = 0 
Query:   12 TETGELLHARRRQSLRMMVAMSLNQSCKDAIQDILLPSSDYLDNRSDPNNKFRELLIKAKESGLTWDDTFSHFTSAPETTAAISQKDFAAGLQKLSSNTSCDVTQADIEQLTKSLMIEETKQVSLDGIKAFALAIPHVSWKVERIRRLSSALSTEEGTSTGNCIPEQAPKTQIKKKTSTTKPSPPAVASK--MTSARSLSRRESSTSTGKVAFSSSVPAMRRSRSRMSSSASIPDSVLAGACRPLPRKSSSKTTPESXLQXXXXXXXXXPVPLYSKVASTTAPNPLLVDELAY-TPLVSLGLIATCSKFLWRQQENLLIYLHSHDTPPRIIAIVALNETTQEEYPPIYVNRDQIPLNRKAIEALADTRSAVLG-NEEDPAGMTPLQQAERDYLAQYLTQRLVLEEKQQGINAGLRSKRINILPQTGDTWNSLLTERPKLLKPPAPVHGARLMSLEDFHKASAEITKLTTQARSHS 483
            T T + L  RRRQSLR+M AMSLN+S  DAI  + +  SD L++  D  +K +E+ I+AKESG+T+DD F  F    E T+ IS K F A L+KLS +  C +T+ D+  L +   + E K VSLD +K FALAIPHVSWKVERIRRLSSALS  + T+       ++   +    T T +P+P   AS+  +  A S SR+   T+  K  FS      ++  ++  SS SI   + + A     R      +PE                  S    +    P +        P ++L L++T SK +WR+QE+L++ L+ HD PPRIIA+ A ++ T + YP IY++RD+IPLNRKAIEALAD   +  G + +    +T LQ+AER+YLAQY+ QRL LE+  +  +    +KR+ I+ QTGD W  L  E+PKL+K P      RL    DFH  S E+  +  + +  S
Sbjct:   33 TSTEDRLEDRRRQSLRVMAAMSLNKSYSDAINGVSINKSD-LEHEEDCTSKLQEIFIRAKESGMTYDDIFKKFCLKHEVTSTISSKAFVAALRKLSPDIFC-LTETDVGLLVRKFEVNEDKVVSLDELKTFALAIPHVSWKVERIRRLSSALSLSDSTN-------RSXXGRAXDSTVTRQPAPRKAASRRSLRQAVSFSRQ---TTFPKPLFSEK---RKKQDTKTFSSTSISPILPSTASIASTRVDDRSFSPEC---------------CRSDYEGSQREQPRITSHFTIEKPTIALSLLSTTSKLMWREQEHLILRLYGHDDPPRIIAVTAKSKGTGKNYPAIYLDRDKIPLNRKAIEALADALPSDAGAHGQSIDALTSLQRAEREYLAQYVVQRLALEDVSRE-SGRETAKRMCIVRQTGDPWEKLAVEKPKLIKSPRSSPEMRLRPAMDFHHTSLEVKNMNYETKRQS 476
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BLAST of NO09G00430 vs. NCBI_GenBank
Match: XP_005854515.1 (hypothetical protein NGA_0160302 [Nannochloropsis gaditana CCMP526] >XP_005855231.1 hypothetical protein NGA_0160301 [Nannochloropsis gaditana CCMP526] >EKU21133.1 hypothetical protein NGA_0160301 [Nannochloropsis gaditana CCMP526] >EKU21842.1 hypothetical protein NGA_0160302 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 145.2 bits (365), Expect = 5.300e-31
Identity = 76/166 (45.78%), Postives = 108/166 (65.06%), Query Frame = 0 
Query:  318 LWRQQENLLIYLHSHDTPPRIIAIVALNETTQEEYPPIYVNRDQIPLNRKAIEALADTRSAVLG-NEEDPAGMTPLQQAERDYLAQYLTQRLVLEEKQQGINAGLRSKRINILPQTGDTWNSLLTERPKLLKPPAPVHGARLMSLEDFHKASAEITKLTTQARSHS 483
            +WR+QE+L++ L+ HD PPRIIA+ A ++ T + YP IY++RD+IPLNRKAIEALAD   +  G + +    +T LQ+AER+YLAQY+ QRL LE+  +  +    +KR+ I+ QTGD W  L  E+PKL+K P      RL    DFH  S E+  +  + + HS
Sbjct:    1 MWREQEHLILRLYGHDDPPRIIAVTAKSKGTGKNYPAIYLDRDKIPLNRKAIEALADALPSDAGAHGQSIDALTSLQRAEREYLAQYVVQRLALEDVSRE-SGRETAKRMCIVRQTGDPWEKLAVEKPKLIKSPRSSPEMRLRPAMDFHHTSLEVKNMNYETKRHS 165
The following BLAST results are available for this feature:
BLAST of NO09G00430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM27758.19.800e-7039.58conserved unknown protein [Nannochloropsis gaditan... [more]
XP_005854515.15.300e-3145.78hypothetical protein NGA_0160302 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL119nonsL119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010503NSK010503Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G00430.1NO09G00430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|26035gene_4516Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100248g10gene2810Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G00430.1NO09G00430.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G00430 ID=NO09G00430|Name=NO09G00430|organism=Nannochloropsis oceanica|type=gene|length=2163bp
ATGGATACATCGCTGCCCGAGGAAGGGCCAGCTACAGAGACCGGAGAGCT
TCTGCATGCAAGGCGCCGTCAATCGCTTCGGATGATGGTGGCTATGAGCC
TGAACCAGTCCTGCAAGGATGCCATTCAAGACATCCTCCTCCCCTCGTCG
GACTACCTCGACAACAGATgtaggtaaatatgccgtgatagctggtccta
tcttcctggcagagtattggctcagagttttcccttgccaccgaacaatt
ttcacgaatacctcttgccccctctcacctcgcacacccatcgcagCCGA
CCCGAATAACAAATTTCGGGAGCTCCTGATTAAGGCCAAGGAATCAGGTC
TGACATGGGACGACACGTTCTCGCACTTCACTTCCGCACCTGAGACTACG
GCCGCCATTTCACAGAAGGACTTCGCCGCGGGCCTTCAAAAACTCAGCTC
CAACACCTCCTGCGACGTGACACAGgtaggtataaaaggcaatggcggca
gattaagtgttttggaaatattggatgatgagtgtgctccaaacgtcacg
gccacgctatttcgtcggttttcaagagctcccctttgcctcagactgtg
tggacaaggtgacggattgtcatgacactttctcatgtctctaccctctt
acactaaatagGCGGACATCGAGCAGCTGACAAAGAGCCTTATGATAGAG
GAAACGAAGCAGGTCTCTCTGGACGGGATTAAGGCTTTTGCCCTGGCGAT
CCCGCACGTGTCCTGGAAGGTAGAACGCATCCGTCGTCTCTCCTCAGCCT
TGTCGACTGAGGAGGGCACAAGCACTGGCAACTGCATCCCTGAACAGgta
attttactgtttcctagtatattaaagaaagtatgtcgagcttttgatag
ctcatgccagcattataatcttttctcgtgcagGCACCCAAGACTCAAAT
CAAGAAGAAAACATCGACCACTAAGCCTTCTCCGCCGGCTGTCGCCTCTA
AGATGACTTCCGCACGCTCACTCTCGCGTCGGGAATCGTCCACATCAACA
GGCAAAGTAGCCTTCTCCAGCAGTGTCCCGGCTATGCGGAGGAGCCGGAG
CCGCATGTCCTCTTCTGCTTCTATACCAGATTCTGTTTTGGCAGGGGCTT
GTCGTCCGCTTCCTCGCAAAAGCAGCAGCAAAACCACCCCGGAATCTGTT
CTTCAAAAGAACAGCGGCAAAACTATTCCGGAACCTGTGCCGCTGTATTC
CAAGGTTGCTTCAACCACAGCGCCTAACCCTTTGCTTGTCGATgtacgta
gctgtacgtgcatgcgacagcgctcatcgcacaatcacagtattaatttc
atacatgacatgtctgaactagGAGCTGGCATACACACCTTTGGTCAGCC
TCGGGTTGATCGCAACCTGCTCGAAATTTCTGTGGCGGCAACAAGAAAAT
CTTCTCATCTATCTACATAGCCATGACACCCCCCCTCGCATAATTGCCAT
CGTAGCACTCAACGAAACTACACAAGAGgtaagagttttcttccgcgcac
ggtaaagagaacaatatacatctggctagcgggcttgtttattttctttt
ttctatctatgaatagGAATATCCGCCTATATACGTCAACCGCGACCAGA
TTCCCCTGAATCGAAAAGCAATTGAAGCTCTGGCAGACACCAGGTCGGCT
GTGCTCGGGAACGAGGAGGACCCTGCGGGCATGACTCCCCTACAGCAGGC
CGAGCGCGACTATCTAGCCCAGTACCTGACGCAGCGATTGGTCTTGGAGG
AGAAACAACAGGGTATCAATGCCGGTCTCCGATCAAAGCGCATCAACATT
CTTCCTCAGACAGgtgagtgagggcgggtgggaagaagctgggggggtgt
ttgggagagagacgattttttgattttctttgtggtaccaactaaataga
atcattttcattacttttttctcactttatcgaaaatggctatgcgccac
agGCGACACGTGGAACAGCCTTTTGACCGAGCGGCCAAAGCTCCTCAAAC
CTCCTGCTCCTGTTCATGGAGCACGCTTGATGTCCTTGGAAGACTTTCAC
AAGGCGTCAGCCGAGATCACGAAACTCACCACCCAGGCACGGAGTCATAG
CACAGGTAAGTAA
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protein sequence of NO09G00430.1

>NO09G00430.1-protein ID=NO09G00430.1-protein|Name=NO09G00430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp
MDTSLPEEGPATETGELLHARRRQSLRMMVAMSLNQSCKDAIQDILLPSS
DYLDNRSDPNNKFRELLIKAKESGLTWDDTFSHFTSAPETTAAISQKDFA
AGLQKLSSNTSCDVTQADIEQLTKSLMIEETKQVSLDGIKAFALAIPHVS
WKVERIRRLSSALSTEEGTSTGNCIPEQAPKTQIKKKTSTTKPSPPAVAS
KMTSARSLSRRESSTSTGKVAFSSSVPAMRRSRSRMSSSASIPDSVLAGA
CRPLPRKSSSKTTPESVLQKNSGKTIPEPVPLYSKVASTTAPNPLLVDEL
AYTPLVSLGLIATCSKFLWRQQENLLIYLHSHDTPPRIIAIVALNETTQE
EYPPIYVNRDQIPLNRKAIEALADTRSAVLGNEEDPAGMTPLQQAERDYL
AQYLTQRLVLEEKQQGINAGLRSKRINILPQTGDTWNSLLTERPKLLKPP
APVHGARLMSLEDFHKASAEITKLTTQARSHSTGK*
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Synonyms
Publications