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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:189749..191911 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G00430.1 vs.
Match: EWM27758.1 (conserved unknown protein [Nannochloropsis gaditana]) HSP 1 Score: 274.6 bits (701), Expect = 5.800e-70 Identity = 189/474 (39.87%), Postives = 268/474 (56.54%), Query Frame = 0
Query: 12 TETGELLHARRRQSLRMMVAMSLNQSCKDAIQDILLPSSDYLDNRSDPNNKFRELLIKAKESGLTWDDTFSHFTSAPETTAAISQKDFAAGLQKLSSNTSCDVTQADIEQLTKSLMIEETKQVSLDGIKAFALAIPHVSWKVERIRRLSSALSTEEGTSTGNCIPEQAPKTQIKKKTSTTKPSPPAVASK--MTSARSLSRRESSTSTGKVAFSSSVPAMRRSRSRMSSSASIPDSVLAGACRPLPRKSSSKTTPESVLQKNSGKTIPEPVPLYSKVASTTAPNPLLVDELAYTPLVSLGLIATCSKFLWRQQENLLIYLHSHDTPPRIIAIVALNETTQEEYPPIYVNRDQIPLNRKAIEALADTRSAVLG-NEEDPAGMTPLQQAERDYLAQYLTQRLVLEEKQQGINAGLRSKRINILPQTGDTWNSLLTERPKLLKPPAPVHGARLMSLEDFHKASAEITKLTTQARSHS 483
T T + L RRRQSLR+M AMSLN+S DAI + + SD L++ D +K +E+ I+AKESG+T+DD F F E T+ IS K F A L+KLS + C +T+ D+ L + + E K VSLD +K FALAIPHVSWKVERIRRLSSALS + T+ ++ + T T +P+P AS+ + A S SR+ T+ K FS ++ ++ SS SI + + A R +PE G +P ++ S P ++L L++T SK +WR+QE+L++ L+ HD PPRIIA+ A ++ T + YP IY++RD+IPLNRKAIEALAD + G + + +T LQ+AER+YLAQY+ QRL LE+ + + +KR+ I+ QTGD W L E+PKL+K P RL DFH S E+ + + + S
Sbjct: 33 TSTEDRLEDRRRQSLRVMAAMSLNKSYSDAINGVSINKSD-LEHEEDCTSKLQEIFIRAKESGMTYDDIFKKFCLKHEVTSTISSKAFVAALRKLSPDIFC-LTETDVGLLVRKFEVNEDKVVSLDELKTFALAIPHVSWKVERIRRLSSALSLSDSTN-------RSDSGRASDSTVTRQPAPRKAASRRSLRQAVSFSRQ---TTFPKPLFSEK---RKKQDTKTFSSTSISPILPSTASIASTRVDDRSFSPECCRSDYEGSQREQP-----RITSHFT---------IEKPTIALSLLSTTSKLMWREQEHLILRLYGHDDPPRIIAVTAKSKGTGKNYPAIYLDRDKIPLNRKAIEALADALPSDAGAHGQSIDALTSLQRAEREYLAQYVVQRLALEDVSRE-SGRETAKRMCIVRQTGDPWEKLAVEKPKLIKSPRSSPEMRLRPAMDFHHTSLEVKNMNYETKRQS 476
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G00430.1 ID=NO09G00430.1|Name=NO09G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1458bp ATGGATACATCGCTGCCCGAGGAAGGGCCAGCTACAGAGACCGGAGAGCT TCTGCATGCAAGGCGCCGTCAATCGCTTCGGATGATGGTGGCTATGAGCC TGAACCAGTCCTGCAAGGATGCCATTCAAGACATCCTCCTCCCCTCGTCG GACTACCTCGACAACAGATCCGACCCGAATAACAAATTTCGGGAGCTCCT GATTAAGGCCAAGGAATCAGGTCTGACATGGGACGACACGTTCTCGCACT TCACTTCCGCACCTGAGACTACGGCCGCCATTTCACAGAAGGACTTCGCC GCGGGCCTTCAAAAACTCAGCTCCAACACCTCCTGCGACGTGACACAGGC GGACATCGAGCAGCTGACAAAGAGCCTTATGATAGAGGAAACGAAGCAGG TCTCTCTGGACGGGATTAAGGCTTTTGCCCTGGCGATCCCGCACGTGTCC TGGAAGGTAGAACGCATCCGTCGTCTCTCCTCAGCCTTGTCGACTGAGGA GGGCACAAGCACTGGCAACTGCATCCCTGAACAGGCACCCAAGACTCAAA TCAAGAAGAAAACATCGACCACTAAGCCTTCTCCGCCGGCTGTCGCCTCT AAGATGACTTCCGCACGCTCACTCTCGCGTCGGGAATCGTCCACATCAAC AGGCAAAGTAGCCTTCTCCAGCAGTGTCCCGGCTATGCGGAGGAGCCGGA GCCGCATGTCCTCTTCTGCTTCTATACCAGATTCTGTTTTGGCAGGGGCT TGTCGTCCGCTTCCTCGCAAAAGCAGCAGCAAAACCACCCCGGAATCTGT TCTTCAAAAGAACAGCGGCAAAACTATTCCGGAACCTGTGCCGCTGTATT CCAAGGTTGCTTCAACCACAGCGCCTAACCCTTTGCTTGTCGATGAGCTG GCATACACACCTTTGGTCAGCCTCGGGTTGATCGCAACCTGCTCGAAATT TCTGTGGCGGCAACAAGAAAATCTTCTCATCTATCTACATAGCCATGACA CCCCCCCTCGCATAATTGCCATCGTAGCACTCAACGAAACTACACAAGAG GAATATCCGCCTATATACGTCAACCGCGACCAGATTCCCCTGAATCGAAA AGCAATTGAAGCTCTGGCAGACACCAGGTCGGCTGTGCTCGGGAACGAGG AGGACCCTGCGGGCATGACTCCCCTACAGCAGGCCGAGCGCGACTATCTA GCCCAGTACCTGACGCAGCGATTGGTCTTGGAGGAGAAACAACAGGGTAT CAATGCCGGTCTCCGATCAAAGCGCATCAACATTCTTCCTCAGACAGGCG ACACGTGGAACAGCCTTTTGACCGAGCGGCCAAAGCTCCTCAAACCTCCT GCTCCTGTTCATGGAGCACGCTTGATGTCCTTGGAAGACTTTCACAAGGC GTCAGCCGAGATCACGAAACTCACCACCCAGGCACGGAGTCATAGCACAG GTAAGTAA back to topprotein sequence of NO09G00430.1 >NO09G00430.1-protein ID=NO09G00430.1-protein|Name=NO09G00430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp MDTSLPEEGPATETGELLHARRRQSLRMMVAMSLNQSCKDAIQDILLPSS DYLDNRSDPNNKFRELLIKAKESGLTWDDTFSHFTSAPETTAAISQKDFA AGLQKLSSNTSCDVTQADIEQLTKSLMIEETKQVSLDGIKAFALAIPHVS WKVERIRRLSSALSTEEGTSTGNCIPEQAPKTQIKKKTSTTKPSPPAVAS KMTSARSLSRRESSTSTGKVAFSSSVPAMRRSRSRMSSSASIPDSVLAGA CRPLPRKSSSKTTPESVLQKNSGKTIPEPVPLYSKVASTTAPNPLLVDEL AYTPLVSLGLIATCSKFLWRQQENLLIYLHSHDTPPRIIAIVALNETTQE EYPPIYVNRDQIPLNRKAIEALADTRSAVLGNEEDPAGMTPLQQAERDYL AQYLTQRLVLEEKQQGINAGLRSKRINILPQTGDTWNSLLTERPKLLKPP APVHGARLMSLEDFHKASAEITKLTTQARSHSTGK* back to topmRNA from alignment at chr9:189749..191911- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G00430.1 ID=NO09G00430.1|Name=NO09G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=2163bp|location=Sequence derived from alignment at chr9:189749..191911- (Nannochloropsis oceanica) ATGGATACATCGCTGCCCGAGGAAGGGCCAGCTACAGAGACCGGAGAGCT
TCTGCATGCAAGGCGCCGTCAATCGCTTCGGATGATGGTGGCTATGAGCC
TGAACCAGTCCTGCAAGGATGCCATTCAAGACATCCTCCTCCCCTCGTCG
GACTACCTCGACAACAGATGTAGGTAAATATGCCGTGATAGCTGGTCCTA
TCTTCCTGGCAGAGTATTGGCTCAGAGTTTTCCCTTGCCACCGAACAATT
TTCACGAATACCTCTTGCCCCCTCTCACCTCGCACACCCATCGCAGCCGA
CCCGAATAACAAATTTCGGGAGCTCCTGATTAAGGCCAAGGAATCAGGTC
TGACATGGGACGACACGTTCTCGCACTTCACTTCCGCACCTGAGACTACG
GCCGCCATTTCACAGAAGGACTTCGCCGCGGGCCTTCAAAAACTCAGCTC
CAACACCTCCTGCGACGTGACACAGGTAGGTATAAAAGGCAATGGCGGCA
GATTAAGTGTTTTGGAAATATTGGATGATGAGTGTGCTCCAAACGTCACG
GCCACGCTATTTCGTCGGTTTTCAAGAGCTCCCCTTTGCCTCAGACTGTG
TGGACAAGGTGACGGATTGTCATGACACTTTCTCATGTCTCTACCCTCTT
ACACTAAATAGGCGGACATCGAGCAGCTGACAAAGAGCCTTATGATAGAG
GAAACGAAGCAGGTCTCTCTGGACGGGATTAAGGCTTTTGCCCTGGCGAT
CCCGCACGTGTCCTGGAAGGTAGAACGCATCCGTCGTCTCTCCTCAGCCT
TGTCGACTGAGGAGGGCACAAGCACTGGCAACTGCATCCCTGAACAGGTA
ATTTTACTGTTTCCTAGTATATTAAAGAAAGTATGTCGAGCTTTTGATAG
CTCATGCCAGCATTATAATCTTTTCTCGTGCAGGCACCCAAGACTCAAAT
CAAGAAGAAAACATCGACCACTAAGCCTTCTCCGCCGGCTGTCGCCTCTA
AGATGACTTCCGCACGCTCACTCTCGCGTCGGGAATCGTCCACATCAACA
GGCAAAGTAGCCTTCTCCAGCAGTGTCCCGGCTATGCGGAGGAGCCGGAG
CCGCATGTCCTCTTCTGCTTCTATACCAGATTCTGTTTTGGCAGGGGCTT
GTCGTCCGCTTCCTCGCAAAAGCAGCAGCAAAACCACCCCGGAATCTGTT
CTTCAAAAGAACAGCGGCAAAACTATTCCGGAACCTGTGCCGCTGTATTC
CAAGGTTGCTTCAACCACAGCGCCTAACCCTTTGCTTGTCGATGTACGTA
GCTGTACGTGCATGCGACAGCGCTCATCGCACAATCACAGTATTAATTTC
ATACATGACATGTCTGAACTAGGAGCTGGCATACACACCTTTGGTCAGCC
TCGGGTTGATCGCAACCTGCTCGAAATTTCTGTGGCGGCAACAAGAAAAT
CTTCTCATCTATCTACATAGCCATGACACCCCCCCTCGCATAATTGCCAT
CGTAGCACTCAACGAAACTACACAAGAGGTAAGAGTTTTCTTCCGCGCAC
GGTAAAGAGAACAATATACATCTGGCTAGCGGGCTTGTTTATTTTCTTTT
TTCTATCTATGAATAGGAATATCCGCCTATATACGTCAACCGCGACCAGA
TTCCCCTGAATCGAAAAGCAATTGAAGCTCTGGCAGACACCAGGTCGGCT
GTGCTCGGGAACGAGGAGGACCCTGCGGGCATGACTCCCCTACAGCAGGC
CGAGCGCGACTATCTAGCCCAGTACCTGACGCAGCGATTGGTCTTGGAGG
AGAAACAACAGGGTATCAATGCCGGTCTCCGATCAAAGCGCATCAACATT
CTTCCTCAGACAGGTGAGTGAGGGCGGGTGGGAAGAAGCTGGGGGGGTGT
TTGGGAGAGAGACGATTTTTTGATTTTCTTTGTGGTACCAACTAAATAGA
ATCATTTTCATTACTTTTTTCTCACTTTATCGAAAATGGCTATGCGCCAC
AGGCGACACGTGGAACAGCCTTTTGACCGAGCGGCCAAAGCTCCTCAAAC
CTCCTGCTCCTGTTCATGGAGCACGCTTGATGTCCTTGGAAGACTTTCAC
AAGGCGTCAGCCGAGATCACGAAACTCACCACCCAGGCACGGAGTCATAG
CACAGGTAAGTAA back to topCoding sequence (CDS) from alignment at chr9:189749..191911- >NO09G00430.1 ID=NO09G00430.1|Name=NO09G00430.1|organism=Nannochloropsis oceanica|type=CDS|length=1458bp|location=Sequence derived from alignment at chr9:189749..191911- (Nannochloropsis oceanica) ATGGATACATCGCTGCCCGAGGAAGGGCCAGCTACAGAGACCGGAGAGCT TCTGCATGCAAGGCGCCGTCAATCGCTTCGGATGATGGTGGCTATGAGCC TGAACCAGTCCTGCAAGGATGCCATTCAAGACATCCTCCTCCCCTCGTCG GACTACCTCGACAACAGATCCGACCCGAATAACAAATTTCGGGAGCTCCT GATTAAGGCCAAGGAATCAGGTCTGACATGGGACGACACGTTCTCGCACT TCACTTCCGCACCTGAGACTACGGCCGCCATTTCACAGAAGGACTTCGCC GCGGGCCTTCAAAAACTCAGCTCCAACACCTCCTGCGACGTGACACAGGC GGACATCGAGCAGCTGACAAAGAGCCTTATGATAGAGGAAACGAAGCAGG TCTCTCTGGACGGGATTAAGGCTTTTGCCCTGGCGATCCCGCACGTGTCC TGGAAGGTAGAACGCATCCGTCGTCTCTCCTCAGCCTTGTCGACTGAGGA GGGCACAAGCACTGGCAACTGCATCCCTGAACAGGCACCCAAGACTCAAA TCAAGAAGAAAACATCGACCACTAAGCCTTCTCCGCCGGCTGTCGCCTCT AAGATGACTTCCGCACGCTCACTCTCGCGTCGGGAATCGTCCACATCAAC AGGCAAAGTAGCCTTCTCCAGCAGTGTCCCGGCTATGCGGAGGAGCCGGA GCCGCATGTCCTCTTCTGCTTCTATACCAGATTCTGTTTTGGCAGGGGCT TGTCGTCCGCTTCCTCGCAAAAGCAGCAGCAAAACCACCCCGGAATCTGT TCTTCAAAAGAACAGCGGCAAAACTATTCCGGAACCTGTGCCGCTGTATT CCAAGGTTGCTTCAACCACAGCGCCTAACCCTTTGCTTGTCGATGAGCTG GCATACACACCTTTGGTCAGCCTCGGGTTGATCGCAACCTGCTCGAAATT TCTGTGGCGGCAACAAGAAAATCTTCTCATCTATCTACATAGCCATGACA CCCCCCCTCGCATAATTGCCATCGTAGCACTCAACGAAACTACACAAGAG GAATATCCGCCTATATACGTCAACCGCGACCAGATTCCCCTGAATCGAAA AGCAATTGAAGCTCTGGCAGACACCAGGTCGGCTGTGCTCGGGAACGAGG AGGACCCTGCGGGCATGACTCCCCTACAGCAGGCCGAGCGCGACTATCTA GCCCAGTACCTGACGCAGCGATTGGTCTTGGAGGAGAAACAACAGGGTAT CAATGCCGGTCTCCGATCAAAGCGCATCAACATTCTTCCTCAGACAGGCG ACACGTGGAACAGCCTTTTGACCGAGCGGCCAAAGCTCCTCAAACCTCCT GCTCCTGTTCATGGAGCACGCTTGATGTCCTTGGAAGACTTTCACAAGGC GTCAGCCGAGATCACGAAACTCACCACCCAGGCACGGAGTCATAGCACAG GTAAGTAA back to top
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