NO08G04200, NO08G04200 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO08G04200 vs. NCBI_GenBank
Match: CBN79123.1 (CPLD51 protein required for cyt b6 assembly [Ectocarpus siliculosus]) HSP 1 Score: 198.7 bits (504), Expect = 2.600e-47 Identity = 114/242 (47.11%), Postives = 151/242 (62.40%), Query Frame = 0 Query: 84 GAPLAAFFDPQ-------VAQDALSSI--LLLADDAVAGSVTDAVADAPSTYSKYSYYTTLGLYALSFPGLISLVTRSVKSKDVRRTFEAPGPNAKEGKGKELKVVAGEVMAYFLSQNYQISENKGSAVTFKGVVGKSKSQAFFLTFCTFMGLISLALVLSIQFQEIGEKWFYITLASPYAGVFYWQRAAREDTVTVSLETPDDTEEVTNIVAVGNKEELERMATTLNYGEKGMVRVQGIFE 317 G+PL+ P A A+S++ LL+D+AV A A YSK+SYYTTLGLY LSFPGL S+V R+ K+K T+E PGP + E + +K A +++AYF + NY+I E G +TF+G + SK QAFFL FCT + +LALVL IQF IG WF +TL SPYAGV+YWQ +R D V LET DD + +T I G EEL+R++ T+ Y EKGM+RV+G+ E Sbjct: 70 GSPLSMVVAPHEVVDAAVAAHHAVSALPSFLLSDEAV------AEAAGSVGYSKFSYYTTLGLYVLSFPGLWSVVKRATKTKYKDATYELPGPASTEKGAESVKQTAAKIIAYFQANNYKIKE-AGETITFEGAIQASKGQAFFLVFCTALSFATLALVLQIQFPAIGNYWFLLTLLSPYAGVYYWQNGSRNDKAQVRLETSDD-DTLTEIYITGAAEELDRLSKTMGYMEKGMIRVKGLLE 303
BLAST of NO08G04200 vs. NCBI_GenBank
Match: XP_002297234.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED86464.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 193.7 bits (491), Expect = 8.500e-46 Identity = 104/189 (55.03%), Postives = 134/189 (70.90%), Query Frame = 0 Query: 126 YSKYSYYTTLGLYALSFPGLISLVTRSVKSKDVRRTFEAPGPNAKEGKGKELKVVAGEVMAYFLSQNYQISENKGSAVTFKGVVGKSKSQAFFLTFCTFMGLISLALVLSIQFQEIGEKWFYITLASPYAGVFYWQRAAREDTVTVSLETPDDTEEVTNIVAVGNKEELERMATTLNYGEKGMVRVQGI 315 YSK SYYTTL LYA SFPGL S + RS K+K R+T+ + G A EG GKEL+ AGE+MAY + NY+++E G +TF+G+V +S SQAFFLTFCT +G+ SLALVL IQFQ++ WFY+TL SPYAG++YW+ R D + V L DD + + I GN EE+ERM TL+ EKGMV+V+GI Sbjct: 1 YSKASYYTTLALYAASFPGLWSQIKRSTKAKVKRKTYVSAG-EAAEG-GKELRQQAGEIMAYMKANNYEVAE-AGETITFRGLVARSTSQAFFLTFCTALGMASLALVLQIQFQDVDFNWFYLTLLSPYAGIYYWRSGDRVDDMKVKLAANDD-DTLNEITIEGNDEEIERMWRTLDLQEKGMVKVEGI 185
BLAST of NO08G04200 vs. NCBI_GenBank
Match: EJK67765.1 (hypothetical protein THAOC_11161 [Thalassiosira oceanica]) HSP 1 Score: 188.0 bits (476), Expect = 4.700e-44 Identity = 112/237 (47.26%), Postives = 149/237 (62.87%), Query Frame = 0 Query: 95 VAQDALSSILLLADDAVAGSVTDAVADAPS----------TYSKYSYYTTLGLYALSFPGLISLVTRSVKSKDVRRTFEAPGPNAKEGKGKELKVVAGEVMAYFLSQNYQISENKGSAVTFKGVVGKSKSQAFFLTFCTFMGLISLALVLSIQFQE-----IGE-KWFYITLASPYAGVFYWQRAAREDTVTVSLETPDDTEEVTNIVAVGNKEELERMATTLNYGEKGMVRVQGIF 316 + DA +I D + S D+VA+ S +YSK SYYTTL LYA SFPGL S V RS K+K R+T+ +PG NA+ GK + + AGE+MAY + NY++++ G + FKG+V +SKSQAFFLTFCT +G+ SLALVL IQFQ+ IG+ WF +TL SPYAG++YW+ R D V L + DD + + I GN EE++RM L EKGMVRV+G+F Sbjct: 55 LVSDAADAISTAVDTVASVSSQDSVAEVTSSVAQPEGFTPSYSKASYYTTLALYAASFPGLWSQVKRSTKAKIKRKTYVSPGENAEGGKTQRQQ--AGEIMAYMKANNYEVAD-AGEKIIFKGLVQQSKSQAFFLTFCTALGMASLALVLQIQFQDLELPVIGKPNWFLLTLLSPYAGIYYWRSGDRVDDFEVKLSSNDD-DTMNEITVQGNDEEIDRMWRALELQEKGMVRVEGVF 287
BLAST of NO08G04200 vs. NCBI_GenBank
Match: GAX22168.1 (hypothetical protein FisN_19Lh227 [Fistulifera solaris]) HSP 1 Score: 180.3 bits (456), Expect = 9.700e-42 Identity = 109/226 (48.23%), Postives = 139/226 (61.50%), Query Frame = 0 Query: 97 QDALSSILLLADDAVAGSVTDAVADAPS-TYSKYSYYTTLGLYALSFPGLISLVTRSVKSKDVRRTFEAPGPNAKEGKGKELKVVAGEVMAYFLSQNYQISENKGSAVTFKGVVGKSKSQAFFLTFCTFMGLISLALVLSIQFQEI----GEKWFYITLASPYAGVFYWQRAAREDTVTVSLETPDDTEEVTNIVAVGNKEELERMATTLNYGEKGMVRVQGIFES 318 Q+ LSS+LL SV + + +YSK SYYT LGLY LSFPG+ S V RS +K R+TF G NA KGK L+ AGE+MAY S NY++ E G +TF+G+V +S QA FL FCT +GL+SLALVL +QF ++ G W+ I L SPYAGV+YW R D ++V L D E IV GN EELERM TL + EKGMV++ G+ E+ Sbjct: 9 QNHLSSLLL--------SVVEGPPEVGGVSYSKASYYTILGLYVLSFPGVWSQVKRSTSAKIKRKTFVTAGENAP--KGKSLRQQAGEIMAYMTSNNYEVVE-AGETITFRGIVQRSLGQAAFLVFCTALGLLSLALVLQVQFNDVELPFGLNWYAIALLSPYAGVYYWSAGDRVDEISVKLVANADETE-NEIVVQGNDEELERMWRTLEWTEKGMVKIPGLLET 222
BLAST of NO08G04200 vs. NCBI_GenBank
Match: GAX19645.1 (hypothetical protein FisN_19Hh227 [Fistulifera solaris]) HSP 1 Score: 177.2 bits (448), Expect = 8.200e-41 Identity = 99/197 (50.25%), Postives = 126/197 (63.96%), Query Frame = 0 Query: 125 TYSKYSYYTTLGLYALSFPGLISLVTRSVKSKDVRRTFEAPGPNAKEGKGKELKVVAGEVMAYFLSQNYQISENKGSAVTFKGVVGKSKSQAFFLTFCTFMGLISLALVLSIQFQEI----GEKWFYITLASPYAGVFYWQRAAREDTVTVSLETPDDTEEVTNIVAVGNKEELERMATTLNYGEKGMVRVQGIFES 318 +YSK SYYT LGLY LSFPG+ S V RS +K R+TF G NA GK L+ AGE+MAY S NY++ + G +TF+G+V +S QA FL FCT +GL+SLALVL +QF ++ G W+ I L SPYAGV+YW R D ++V L D E IV G+ EELERM TL + EKGMV++ G+ ES Sbjct: 69 SYSKASYYTILGLYVLSFPGVWSQVKRSTSAKIKRKTFVTAGENA--AAGKSLRQQAGEIMAYMTSNNYEVVD-AGETITFRGIVQRSLGQAAFLVFCTALGLLSLALVLQVQFNDVELPFGLNWYAIALLSPYAGVYYWSAGDRVDEISVKLVANADETE-NEIVVQGSDEELERMWRTLEWTEKGMVKIPGLLES 261
BLAST of NO08G04200 vs. NCBI_GenBank
Match: GAQ78806.1 (hypothetical protein KFL_000190250 [Klebsormidium nitens]) HSP 1 Score: 176.4 bits (446), Expect = 1.400e-40 Identity = 107/227 (47.14%), Postives = 149/227 (65.64%), Query Frame = 0 Query: 93 PQVAQDALSSILL--LADDAVAGSVTDAVADAPS-TYSKYSYYTTLGLYALSFPGLISLVTRSVKSKDVRRTFEAPGPNAKEGKGKELKVVAGEVMAYFLSQNYQISENKGSAVTFKGVVGKSKSQAFFLTFCTFMGLISLALVLSIQFQEIGEKWFYITLASPYAGVFYWQRAAREDTVTVSLETPDDTEEVTNIVAVGNKEELERMATTLNYGEKGMVRVQGIFE 317 PQ+A + +L A V G++ A AD+P+ YS+ SYYTTLGL+ LS PGL SL+ RS KSK V++TF GP AKE + K L VA E+ +F + NY I+ G +TF+G V S+ QA FLTFC +GL+S+ALVLSI ++GEKW+ +TL SP AGV+YW++A+R++ V V + T DD E T+I+ G+ EE+ER L+ EKG + V+G+ E Sbjct: 76 PQIADKGPDTTVLYSFAAPLVIGAL--ASADSPAGGYSQASYYTTLGLFVLSAPGLWSLIKRSTKSKIVQKTFVVDGP-AKE-EAKPLDSVASEIATFFKNNNYSIA-GTGEVITFEGNVAPSRGQAAFLTFCAALGLLSIALVLSIAVPDVGEKWYGMTLLSPLAGVYYWRKASRKEKVKVKMVTSDD-EVSTDIIVEGDDEEIERFRRELDMREKGKIYVKGLLE 296
BLAST of NO08G04200 vs. NCBI_GenBank
Match: OEU18903.1 (hypothetical protein FRACYDRAFT_182950 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 173.3 bits (438), Expect = 1.200e-39 Identity = 101/231 (43.72%), Postives = 140/231 (60.61%), Query Frame = 0 Query: 95 VAQDALSSILLLADDAVAGSVTD----AVADAPSTYSKYSYYTTLGLYALSFPGLISLVTRSVKSKDVRRTFEAPGPNAKEGKGKELKVVAGEVMAYFLSQNYQISENKGSAVTFKGVVGKSKSQAFFLTFCTFMGLISLALVLSIQFQEI------GEKWFYITLASPYAGVFYWQRAAREDTVTVSLETPDDTEEVTNIVAVGNKEELERMATTLNYGEKGMVRVQGIF 316 + + A SS ++ DAVA ++ TYSK SYY L LY LSFPGL S + RS K+K R+ + + G NA EG G L+ AGE+MAY + NY++ + G + F+GVV +S SQA FL FC +GL SLALVLSIQF + W+YITL SPYAG++YW+ R D ++ LE DD E +I +G+++E+ERM L + EKGM++V+ +F Sbjct: 10 IFETATSSSTVVLADAVADNLASPDYIPGTSGDVTYSKASYYAILTLYGLSFPGLWSTIKRSTKAKVKRKVYVSKGENALEGDGMGLRAQAGEIMAYMKANNYEVVD-AGETIKFEGVVQRSVSQACFLVFCGAIGLASLALVLSIQFNSLELPIIGTPNWYYITLISPYAGIYYWRSGDRTDEFSIKLEANDDETE-NSINVMGSEDEIERMYKALEWQEKGMIKVEPLF 238
BLAST of NO08G04200 vs. NCBI_GenBank
Match: XP_002184661.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC43720.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 172.6 bits (436), Expect = 2.000e-39 Identity = 103/223 (46.19%), Postives = 137/223 (61.43%), Query Frame = 0 Query: 111 VAGSVTDAVADAPST-----------YSKYSYYTTLGLYALSFPGLISLVTRSVKSKDVRRTFEAPGPNAKEGKGKELKVVAGEVMAYFLSQNYQISENKGSAVTFKGVVGKSKSQAFFLTFCTFMGLISLALVLSIQFQE-----IGE-KWFYITLASPYAGVFYWQRAAREDTVTVSLETPDDTEEVTNIVAVGNKEELERMATTLNYGEKGMVRVQGIFE 317 V S VADA +T YSK SYYT LGLYALSFPGL S V RS K+K R+T+ + G A +G L+ AGE+MAY + NY++ + G +TF+GV+ +S SQA FL+F T G++SLALVL+IQF + IG+ W+ + L PYAG++YWQ R D +V L T ++ E I G++EELERM TL + EKGMVRV G+ + Sbjct: 9 VVESAATIVADAAATQTAPPELGGISYSKASYYTILGLYALSFPGLWSTVARSTKAKIKRKTYVSAGEKADGTQGLGLRQQAGEIMAYMKANNYEVVD-AGETITFRGVIPRSLSQALFLSFVTIFGMLSLALVLNIQFNDLELPLIGKPNWYLLALLGPYAGIYYWQSGDRVDDCSVKLVTNEEETE-NEITVQGSEEELERMWRTLGWQEKGMVRVDGLLD 229
BLAST of NO08G04200 vs. NCBI_GenBank
Match: XP_002299034.2 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Populus trichocarpa]) HSP 1 Score: 169.5 bits (428), Expect = 1.700e-38 Identity = 90/198 (45.45%), Postives = 136/198 (68.69%), Query Frame = 0 Query: 119 VADAPSTYSKYSYYTTLGLYALSFPGLISLVTRSVKSKDVRRTFEAPGPNAKEGKGKELKVVAGEVMAYFLSQNYQISENKGSAVTFKGVVGKSKSQAFFLTFCTFMGLISLALVLSIQFQEIGEKWFYITLASPYAGVFYWQRAAREDTVTVSLETPDDTEEVTNIVAVGNKEELERMATTLNYGEKGMVRVQGIFE 317 VA++ ++YS SYYT+LGL+ +S PGL SL+ RSVKSK V++TF G EGK KE VAGE++++F N+ ++ +G +TF+G++ ++ QA LTFCT + L S+ALVL+I F + G WF+IT+ SP AG +YW+RA+R++ + V + DD ++ IV G+ +++E+M L + EKGMV V+GIFE Sbjct: 89 VAESAASYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFTGEG----EGK-KEPAQVAGEILSFFTRNNFAVT-GRGETITFEGMMVPNRGQAALLTFCTCISLASVALVLTITFPDFGNNWFWITILSPLAGAYYWKRASRKEEIKVKMMVADD-GTLSEIVVQGDDQQVEQMRKDLQFSEKGMVYVKGIFE 279
BLAST of NO08G04200 vs. NCBI_GenBank
Match: PNT60281.1 (hypothetical protein POPTR_001G463200v3 [Populus trichocarpa]) HSP 1 Score: 169.5 bits (428), Expect = 1.700e-38 Identity = 90/198 (45.45%), Postives = 136/198 (68.69%), Query Frame = 0 Query: 119 VADAPSTYSKYSYYTTLGLYALSFPGLISLVTRSVKSKDVRRTFEAPGPNAKEGKGKELKVVAGEVMAYFLSQNYQISENKGSAVTFKGVVGKSKSQAFFLTFCTFMGLISLALVLSIQFQEIGEKWFYITLASPYAGVFYWQRAAREDTVTVSLETPDDTEEVTNIVAVGNKEELERMATTLNYGEKGMVRVQGIFE 317 VA++ ++YS SYYT+LGL+ +S PGL SL+ RSVKSK V++TF G EGK KE VAGE++++F N+ ++ +G +TF+G++ ++ QA LTFCT + L S+ALVL+I F + G WF+IT+ SP AG +YW+RA+R++ + V + DD ++ IV G+ +++E+M L + EKGMV V+GIFE Sbjct: 119 VAESAASYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFTGEG----EGK-KEPAQVAGEILSFFTRNNFAVT-GRGETITFEGMMVPNRGQAALLTFCTCISLASVALVLTITFPDFGNNWFWITILSPLAGAYYWKRASRKEEIKVKMMVADD-GTLSEIVVQGDDQQVEQMRKDLQFSEKGMVYVKGIFE 309 The following BLAST results are available for this feature:
BLAST of NO08G04200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO08G04200 ID=NO08G04200|Name=NO08G04200|organism=Nannochloropsis oceanica|type=gene|length=2257bpback to top protein sequence of NO08G04200.1 >NO08G04200.1-protein ID=NO08G04200.1-protein|Name=NO08G04200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=319bpback to top Synonyms
Publications
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