NO08G04200.1, NO08G04200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G04200.1
Unique NameNO08G04200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1266
Alignment locationchr8:1210101..1212357 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1210101..1212357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G04200.1 vs.
Match: CBN79123.1 (CPLD51 protein required for cyt b6 assembly [Ectocarpus siliculosus])

HSP 1 Score: 198.7 bits (504), Expect = 2.600e-47
Identity = 113/242 (46.69%), Postives = 151/242 (62.40%), Query Frame = 0 
Query:   84 GAPLAAFFDPQ-------VAQDALSSI--LLLADDAVAGSVTDAVADAPSTYSKYSYYTTLGLYALSFPGLISLVTRSVKSKDVRRTFEAPGPNAKEGKGKELKVVAGEVMAYFLSQNYQISENKGSAVTFKGVVGKSKSQAFFLTFCTFMGLISLALVLSIQFQEIGEKWFYITLASPYAGVFYWQRAAREDTVTVSLETPDDTEEVTNIVAVGNKEELERMATTLNYGEKGMVRVQGIFE 317
            G+PL+    P         A  A+S++   LL+D+AVA +           YSK+SYYTTLGLY LSFPGL S+V R+ K+K    T+E PGP + E   + +K  A +++AYF + NY+I E  G  +TF+G +  SK QAFFL FCT +   +LALVL IQF  IG  WF +TL SPYAGV+YWQ  +R D   V LET DD + +T I   G  EEL+R++ T+ Y EKGM+RV+G+ E
Sbjct:   70 GSPLSMVVAPHEVVDAAVAAHHAVSALPSFLLSDEAVAEAAGSV------GYSKFSYYTTLGLYVLSFPGLWSVVKRATKTKYKDATYELPGPASTEKGAESVKQTAAKIIAYFQANNYKIKE-AGETITFEGAIQASKGQAFFLVFCTALSFATLALVLQIQFPAIGNYWFLLTLLSPYAGVYYWQNGSRNDKAQVRLETSDD-DTLTEIYITGAAEELDRLSKTMGYMEKGMIRVKGLLE 303
The following BLAST results are available for this feature:
BLAST of NO08G04200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN79123.12.600e-4746.69CPLD51 protein required for cyt b6 assembly [Ectoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G04200NO08G04200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G04200.1NO08G04200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G04200.1.cds1NO08G04200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04200.1.cds2NO08G04200.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04200.1.cds3NO08G04200.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04200.1.cds4NO08G04200.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04200.1.cds5NO08G04200.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04200.1.cds6NO08G04200.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G04200.1 ID=NO08G04200.1|Name=NO08G04200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1266bp
CCTGACGAGGCTGGTCCGACGAAGTCAACTTGCTCATTATTGTCCCTCAG
CCTTAAATCTGCACAAGTTTTCACAGCTGCACCCTGAGATTTTGGTGCAA
ATGCGTCTCCTGTCCAGCCTGGCCTTTGCTTATGTGACATTTTGGCGTTG
TCCAACACACAAGAGGGACGCCAGCAGGCACGGATGGATACATGGCCATG
CATCACACGGGTTCACCAGCTCACACCGATTCCCCACCAACAAAATCACA
GTCGAACGACACTTGAATCTTCAGCCATGCACGGCCGGACCTCCTTTTTC
GTCGCCGCCTTGGCAAGCTCCAGCTTGCTGCTGGCTGCCCAATCCTTTGT
CATGCCCTCGGCCCCTATGAGTCGTTCCCCCGCCGGCATAGCTGCCCGCC
GCCCCTTGGCGATCGGTACCAGCAACAGAAGAGGTGCCCCCTTGGCTGCG
TTCTTCGACCCTCAAGTCGCTCAAGACGCCCTTTCCTCCATCCTCCTCCT
CGCGGATGATGCCGTGGCTGGCTCCGTCACCGACGCTGTGGCCGACGCCC
CCTCCACCTACAGCAAGTACTCGTACTATACTACGCTAGGCCTGTACGCG
CTCTCCTTTCCCGGCCTCATCTCCCTTGTCACACGCTCCGTAAAGAGTAA
GGACGTCCGTCGTACCTTCGAGGCACCGGGGCCCAATGCTAAGGAGGGAA
AGGGGAAGGAGCTGAAGGTGGTGGCGGGGGAGGTGATGGCATATTTCTTG
AGCCAAAACTATCAGATTTCGGAGAATAAGGGGAGCGCCGTCACGTTCAA
GGGCGTGGTGGGGAAGAGCAAGAGCCAGGCTTTTTTCCTCACCTTCTGCA
CCTTTATGGGCCTCATCTCCCTAGCCCTCGTCTTGTCCATCCAGTTCCAG
GAGATTGGAGAAAAGTGGTTTTATATTACCCTCGCCTCTCCATACGCGGG
CGTGTTTTACTGGCAGCGTGCTGCGCGAGAGGACACTGTCACGGTCTCCC
TCGAGACACCCGACGATACCGAGGAAGTGACCAACATCGTGGCCGTAGGG
AACAAGGAGGAGCTAGAGCGGATGGCCACCACCCTCAACTACGGAGAGAA
GGGGATGGTCCGCGTACAGGGCATTTTCGAGTCGACTTAAAAGGGAAAAA
AATCTATGATAATGACGGGAAACAAATGATAACGAACGAACGAGGCTCGA
GGGATGGGGACAGGGAGGAGAAGAGCGAGACTGCAAAGAATGAAACGGTT
TGTGATTTTGGATGAC
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protein sequence of NO08G04200.1

>NO08G04200.1-protein ID=NO08G04200.1-protein|Name=NO08G04200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=319bp
MDTWPCITRVHQLTPIPHQQNHSRTTLESSAMHGRTSFFVAALASSSLLL
AAQSFVMPSAPMSRSPAGIAARRPLAIGTSNRRGAPLAAFFDPQVAQDAL
SSILLLADDAVAGSVTDAVADAPSTYSKYSYYTTLGLYALSFPGLISLVT
RSVKSKDVRRTFEAPGPNAKEGKGKELKVVAGEVMAYFLSQNYQISENKG
SAVTFKGVVGKSKSQAFFLTFCTFMGLISLALVLSIQFQEIGEKWFYITL
ASPYAGVFYWQRAAREDTVTVSLETPDDTEEVTNIVAVGNKEELERMATT
LNYGEKGMVRVQGIFEST*
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mRNA from alignment at chr8:1210101..1212357+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G04200.1 ID=NO08G04200.1|Name=NO08G04200.1|organism=Nannochloropsis oceanica|type=mRNA|length=2257bp|location=Sequence derived from alignment at chr8:1210101..1212357+ (Nannochloropsis oceanica)
CCTGACGAGGCTGGTCCGACGAAGTCAACTTGCTCATTATTGTCCCTCAG
CCTTAAATCTGCACAAGTTTTCACAGCTGCACCCTGAGATTTTGGTGCAA
ATGCGTCTCCTGTCCAGCCTGGCCTTTGCTTATGTGACATTTTGGCGTTG
TCCAACACACAAGAGGGACGCCAGCAGGCACGGATGGATACATGGCCATG
CATCACACGGGTTCACCAGCTCACACCGATTCCCCACCAACAAAATCACA
GTCGAACGACACTTGAATCTTCAGCCATGCACGGCCGGACCTCCTTTTTC
GTCGCCGCCTTGGCAAGCTCCAGCTTGCTGCTGGCTGCCCAATCCTTTGT
CATGCCCTCGGCCCCTATGAGTCGTTCCCCCGCCGGCATAGCTGGTACGT
AGCGTTAAGGGTGGTCGGACGGAGGTGTCCATTAAAAGGTGTGCAGATTT
CGATAGAAAGCTATATTCGTATTCCAGTCATTTCCTATTCTTTTTCCCCC
CACTTCTCTCAGTGCGTGTGACTCGTGTCGTTTCCCTTGCCTAGTCAGAC
GACCCCCCTACTCACCCTCTGCTCCCCCCCCCCCCCTACCCTTCAGCCCG
CCGCCCCTTGGCGATCGGTACCAGCAACAGAAGAGGTGCCCCCTTGGCTG
CGTTCTTCGACCCTCAAGTCGCTCAAGACGCCCTTTCCTCCATCCTCCTC
CTCGCGGGTAGGTCTGACCACGTGCCATGCTTCCTCTTCTCCCACCCTCC
TTCCCACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCCCCCTTACTCTTTCTAACCCATGCTTCCATCTTCTCCAC
CTCCTCAGATGATGCCGTGGCTGGCTCCGTCACCGACGCTGTGGCCGACG
CCCCCTCCACCTACAGCAAGTACTCGTACTATACTACGCTAGGCCTGTAC
GCGCTCTCCTTTCCCGGCCTCATCTCCCTTGTCACACGCTCCGTAAAGAG
TAAGGACGTCCGTCGTACCTTCGAGGCACCGGGGCCCAATGCTAAGGAGG
GAAAGGGGAAGGAGCTGAAGGTGGTGGCGGGGGAGGTGATGGCATATTTC
TTGAGCCAAAACTATCAGGTAAAGGAGGGAAGGAAGGAAGGAGGGAGGGA
GGAAGGGAGAGAGGGAGGGAGAGAGGGAGAGAGGGAGAGAGGGAGAGAGA
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGATAAAGGACATTTTGGC
AAACGTCGACATTCTGCATTTTCCCCTCCCATCCTCTGTATTTCTGCATT
TTCCCCTCTCATCCTATGTATTTCTGCATTTTTACCTCCCATCCTCTGTC
CCTCCCTCCTTCCCCTCTTCCGCAGATTTCGGAGAATAAGGGGAGCGCCG
TCACGTTCAAGGGCGTGGTGGGGAAGAGCAAGAGCCAGGCTTTTTTCCTC
ACCTTCTGCACCTTTATGGGCCTCATCTCCCTAGCCCTCGTCTTGTCCAT
CCAGTTCCAGGAGATTGGAGAAAAGTGGTTTTATATTACCCTCGCCTCTC
CATACGCGTGAGTGCCCTTCCTTCCTCCCTCCCTCCCTCCCTCCGTCCCT
CCCTCCCTTCCTCCCTCGTCTTGCTGGCTGACGTTTCACCTTCTCCTAAC
CCTCCCCCCCTCCTTCCTCTTCCCATTCCTCCCCCCTTTGCTCTTCTCTT
TAATCCCTAGGGGCGTGTTTTACTGGCAGCGTGCTGCGCGAGAGGACACT
GTCACGGTCTCCCTCGAGACACCCGACGATGTAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGGAGGGAGGG
AGGGAAGGAGGGAGGGAGGGAGGGAATGAGGGGAGGGAGAAGGCGGGGCT
AAGAGGCTCACTCTGTCTAGGGTGATACGAAAATCCTTCATCCATCCACT
TTCCCTCCCTCTCTCATTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCAGACCGAGGAAGTGACCAACATCGTGGCCGTAGGGAACAAGGAG
GAGCTAGAGCGGATGGCCACCACCCTCAACTACGGAGAGAAGGGGATGGT
CCGCGTACAGGGCATTTTCGAGTCGACTTAAAAGGGAAAAAAATCTATGA
TAATGACGGGAAACAAATGATAACGAACGAACGAGGCTCGAGGGATGGGG
ACAGGGAGGAGAAGAGCGAGACTGCAAAGAATGAAACGGTTTGTGATTTT
GGATGAC
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Coding sequence (CDS) from alignment at chr8:1210101..1212357+

>NO08G04200.1 ID=NO08G04200.1|Name=NO08G04200.1|organism=Nannochloropsis oceanica|type=CDS|length=957bp|location=Sequence derived from alignment at chr8:1210101..1212357+ (Nannochloropsis oceanica)
ATGGATACATGGCCATGCATCACACGGGTTCACCAGCTCACACCGATTCC
CCACCAACAAAATCACAGTCGAACGACACTTGAATCTTCAGCCATGCACG
GCCGGACCTCCTTTTTCGTCGCCGCCTTGGCAAGCTCCAGCTTGCTGCTG
GCTGCCCAATCCTTTGTCATGCCCTCGGCCCCTATGAGTCGTTCCCCCGC
CGGCATAGCTGCCCGCCGCCCCTTGGCGATCGGTACCAGCAACAGAAGAG
GTGCCCCCTTGGCTGCGTTCTTCGACCCTCAAGTCGCTCAAGACGCCCTT
TCCTCCATCCTCCTCCTCGCGGATGATGCCGTGGCTGGCTCCGTCACCGA
CGCTGTGGCCGACGCCCCCTCCACCTACAGCAAGTACTCGTACTATACTA
CGCTAGGCCTGTACGCGCTCTCCTTTCCCGGCCTCATCTCCCTTGTCACA
CGCTCCGTAAAGAGTAAGGACGTCCGTCGTACCTTCGAGGCACCGGGGCC
CAATGCTAAGGAGGGAAAGGGGAAGGAGCTGAAGGTGGTGGCGGGGGAGG
TGATGGCATATTTCTTGAGCCAAAACTATCAGATTTCGGAGAATAAGGGG
AGCGCCGTCACGTTCAAGGGCGTGGTGGGGAAGAGCAAGAGCCAGGCTTT
TTTCCTCACCTTCTGCACCTTTATGGGCCTCATCTCCCTAGCCCTCGTCT
TGTCCATCCAGTTCCAGGAGATTGGAGAAAAGTGGTTTTATATTACCCTC
GCCTCTCCATACGCGGGCGTGTTTTACTGGCAGCGTGCTGCGCGAGAGGA
CACTGTCACGGTCTCCCTCGAGACACCCGACGATACCGAGGAAGTGACCA
ACATCGTGGCCGTAGGGAACAAGGAGGAGCTAGAGCGGATGGCCACCACC
CTCAACTACGGAGAGAAGGGGATGGTCCGCGTACAGGGCATTTTCGAGTC
GACTTAA
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Synonyms
Publications