NO08G04110, NO08G04110 (gene) Nannochloropsis oceanica

Overview
NameNO08G04110
Unique NameNO08G04110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1741
Alignment locationchr8:1170326..1172066 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1170326..1172066 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO08G04110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G04110.1NO08G04110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629109gene_3752Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G04110.1NO08G04110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G04110 ID=NO08G04110|Name=NO08G04110|organism=Nannochloropsis oceanica|type=gene|length=1741bp
ATGAATCTGTTAAAGTCGAGTCTTGTCTTCTCTTTTGCCTTCGGCATGGT
CTTCACCACCGCCTATACTGGCGTGCCCTTCGAGTACCGCGTCGGTATGG
AGCTGTCTAGCCATCAAGGTATCACGGCCCACATGCCCTCCTTAACCTTG
CATACAAATATTGATGCATTCTACCACCACCTCCACGGGCCGCATCTCGT
CCTTGCAGCCCCGGTGCTTACCCCTGCTACTCCTTACGAGAACACCTCCT
GTGGCATCGAGGGGGTTACCGAGGAGGCCAAGCTAGAAGGTACCTGTCCC
ATCCGGTCTGTCGAGAAAATTTCTTGTAAACATGCTCACGTCAATGTCCA
CAGTGAGGGCTCTACCAAGgtatgtgagtttttgttgcttcctcccccct
ctttcctcgttcattcgcttctagccactcccgtttctccttccttttct
tcactcacatctaagacctctatttctcctcatttggattttcaagtcaa
attttctgaagatgcaaatgccttctattgccctcgatgcttttacttct
taaaactcagctgttgcttttctgcctaccctataccaacccaccctcct
tacagCTACTCTTGAGGGGGAGTGAAGAAATGAGGTCCTTCGGGCTTAAC
ACCACGTGCCGCAACGTCCGCAATCACCGTCTGTTTCTCTCTAAGGACCA
GCAGCTGTTCGGACTTTCCGATTCGGAGCTCTTTTTGAGCAAGGAGGTCG
CAGGTTTGGTGGGATTGATGGTGACTTGGTTTATGGCCTTTCCTGAGTCA
ACCAGCGACCTGTCCTCGATGACTCGCACGGCGGCTAGCACACACGTGGT
TTTTATTTTCCTTCTTGTGGCCTATGTGCTGGCACTTTTCATGATCCTTG
TAATGCATTTCACGGCTTTGGCGGGGAAGAAGCACAACGGGTATTTGAAT
GTAAGGGTTCCTGAGAGGGAGGAATTGGCAGGGGACGATAAGAAAGGAGA
GAAGGGGAAGCACATGGAGGGAGCTACTGCAACAGTAGGAATCGAACAGC
AGCAATTCATGCCCACCGAGGCCCTGCTGCAAGCGCAAGAGTCCTTGGCG
GAGGCGAAGAAGGAGGGAGTTGGTGGTCCGTGCGATGTTGTGACAAATCA
TTTTGAAAAGGAGTGTCGAAAGGTGCAACATGCAGAGAGTTCGAGCCTTT
TCGAGGATGAGGGTTTAATTGGGACTGTAATTGCCAAGCTGCTGGTAGCG
GAAGACGAGGGAGTTGAGGCCGTCCCTCCTGTCTTCAATAACGTGGAGCG
CCGAAAGATGACTCTGAAGACTTGGACGAACTTCCGGATGATGACCAAAG
GCCCAGGCGGCCACAGACTCTCTGTGGCTCGCATGGATATGGCGCCTTCC
ACTTCTATCTCCTATGTCACTGGAGAAGGCGAGCGGAGCCGCAGTGAGTC
TGTCCTGCCTAGAGGAACGACATCCTTTTCGATCAATGTTGACGGCGCGG
TAGTGTTAACGGCCGCTCACAAGCCCAAGAAGATGGGCAAGATGGCCGCC
TTTCGGGCAAGGTGGAAGCGCGTCTTTCGAGTTCCAGTTCGCAAGAGCTC
GTTTTCCCATCGGGCCACAGCTGCTACTTCCTCGTGTGGCATGGCTTAGA
AAATGGGGGGACACTTGTACGTGCACGTGTGAGTGTATGTGCATGTGTCG
GTGTTTCCGCGTACATGTGCGCGCGGGTGCCTATGAGAGCG
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protein sequence of NO08G04110.1

>NO08G04110.1-protein ID=NO08G04110.1-protein|Name=NO08G04110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=471bp
MNLLKSSLVFSFAFGMVFTTAYTGVPFEYRVGMELSSHQGITAHMPSLTL
HTNIDAFYHHLHGPHLVLAAPVLTPATPYENTSCGIEGVTEEAKLEGTCP
IRSVEKISCKHAHVNVHSEGSTKLLLRGSEEMRSFGLNTTCRNVRNHRLF
LSKDQQLFGLSDSELFLSKEVAGLVGLMVTWFMAFPESTSDLSSMTRTAA
STHVVFIFLLVAYVLALFMILVMHFTALAGKKHNGYLNVRVPEREELAGD
DKKGEKGKHMEGATATVGIEQQQFMPTEALLQAQESLAEAKKEGVGGPCD
VVTNHFEKECRKVQHAESSSLFEDEGLIGTVIAKLLVAEDEGVEAVPPVF
NNVERRKMTLKTWTNFRMMTKGPGGHRLSVARMDMAPSTSISYVTGEGER
SRSESVLPRGTTSFSINVDGAVVLTAAHKPKKMGKMAAFRARWKRVFRVP
VRKSSFSHRATAATSSCGMA*
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Synonyms
Publications