NO08G04110.1, NO08G04110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G04110.1
Unique NameNO08G04110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1505
Alignment locationchr8:1170326..1172066 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1170326..1172066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO08G04110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G04110NO08G04110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G04110.1NO08G04110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G04110.1.cds1NO08G04110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04110.1.cds2NO08G04110.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G04110.1 ID=NO08G04110.1|Name=NO08G04110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1505bp
ATGAATCTGTTAAAGTCGAGTCTTGTCTTCTCTTTTGCCTTCGGCATGGT
CTTCACCACCGCCTATACTGGCGTGCCCTTCGAGTACCGCGTCGGTATGG
AGCTGTCTAGCCATCAAGGTATCACGGCCCACATGCCCTCCTTAACCTTG
CATACAAATATTGATGCATTCTACCACCACCTCCACGGGCCGCATCTCGT
CCTTGCAGCCCCGGTGCTTACCCCTGCTACTCCTTACGAGAACACCTCCT
GTGGCATCGAGGGGGTTACCGAGGAGGCCAAGCTAGAAGGTACCTGTCCC
ATCCGGTCTGTCGAGAAAATTTCTTGTAAACATGCTCACGTCAATGTCCA
CAGTGAGGGCTCTACCAAGCTACTCTTGAGGGGGAGTGAAGAAATGAGGT
CCTTCGGGCTTAACACCACGTGCCGCAACGTCCGCAATCACCGTCTGTTT
CTCTCTAAGGACCAGCAGCTGTTCGGACTTTCCGATTCGGAGCTCTTTTT
GAGCAAGGAGGTCGCAGGTTTGGTGGGATTGATGGTGACTTGGTTTATGG
CCTTTCCTGAGTCAACCAGCGACCTGTCCTCGATGACTCGCACGGCGGCT
AGCACACACGTGGTTTTTATTTTCCTTCTTGTGGCCTATGTGCTGGCACT
TTTCATGATCCTTGTAATGCATTTCACGGCTTTGGCGGGGAAGAAGCACA
ACGGGTATTTGAATGTAAGGGTTCCTGAGAGGGAGGAATTGGCAGGGGAC
GATAAGAAAGGAGAGAAGGGGAAGCACATGGAGGGAGCTACTGCAACAGT
AGGAATCGAACAGCAGCAATTCATGCCCACCGAGGCCCTGCTGCAAGCGC
AAGAGTCCTTGGCGGAGGCGAAGAAGGAGGGAGTTGGTGGTCCGTGCGAT
GTTGTGACAAATCATTTTGAAAAGGAGTGTCGAAAGGTGCAACATGCAGA
GAGTTCGAGCCTTTTCGAGGATGAGGGTTTAATTGGGACTGTAATTGCCA
AGCTGCTGGTAGCGGAAGACGAGGGAGTTGAGGCCGTCCCTCCTGTCTTC
AATAACGTGGAGCGCCGAAAGATGACTCTGAAGACTTGGACGAACTTCCG
GATGATGACCAAAGGCCCAGGCGGCCACAGACTCTCTGTGGCTCGCATGG
ATATGGCGCCTTCCACTTCTATCTCCTATGTCACTGGAGAAGGCGAGCGG
AGCCGCAGTGAGTCTGTCCTGCCTAGAGGAACGACATCCTTTTCGATCAA
TGTTGACGGCGCGGTAGTGTTAACGGCCGCTCACAAGCCCAAGAAGATGG
GCAAGATGGCCGCCTTTCGGGCAAGGTGGAAGCGCGTCTTTCGAGTTCCA
GTTCGCAAGAGCTCGTTTTCCCATCGGGCCACAGCTGCTACTTCCTCGTG
TGGCATGGCTTAGAAAATGGGGGGACACTTGTACGTGCACGTGTGAGTGT
ATGTGCATGTGTCGGTGTTTCCGCGTACATGTGCGCGCGGGTGCCTATGA
GAGCG
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protein sequence of NO08G04110.1

>NO08G04110.1-protein ID=NO08G04110.1-protein|Name=NO08G04110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=471bp
MNLLKSSLVFSFAFGMVFTTAYTGVPFEYRVGMELSSHQGITAHMPSLTL
HTNIDAFYHHLHGPHLVLAAPVLTPATPYENTSCGIEGVTEEAKLEGTCP
IRSVEKISCKHAHVNVHSEGSTKLLLRGSEEMRSFGLNTTCRNVRNHRLF
LSKDQQLFGLSDSELFLSKEVAGLVGLMVTWFMAFPESTSDLSSMTRTAA
STHVVFIFLLVAYVLALFMILVMHFTALAGKKHNGYLNVRVPEREELAGD
DKKGEKGKHMEGATATVGIEQQQFMPTEALLQAQESLAEAKKEGVGGPCD
VVTNHFEKECRKVQHAESSSLFEDEGLIGTVIAKLLVAEDEGVEAVPPVF
NNVERRKMTLKTWTNFRMMTKGPGGHRLSVARMDMAPSTSISYVTGEGER
SRSESVLPRGTTSFSINVDGAVVLTAAHKPKKMGKMAAFRARWKRVFRVP
VRKSSFSHRATAATSSCGMA*
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mRNA from alignment at chr8:1170326..1172066+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G04110.1 ID=NO08G04110.1|Name=NO08G04110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1741bp|location=Sequence derived from alignment at chr8:1170326..1172066+ (Nannochloropsis oceanica)
ATGAATCTGTTAAAGTCGAGTCTTGTCTTCTCTTTTGCCTTCGGCATGGT
CTTCACCACCGCCTATACTGGCGTGCCCTTCGAGTACCGCGTCGGTATGG
AGCTGTCTAGCCATCAAGGTATCACGGCCCACATGCCCTCCTTAACCTTG
CATACAAATATTGATGCATTCTACCACCACCTCCACGGGCCGCATCTCGT
CCTTGCAGCCCCGGTGCTTACCCCTGCTACTCCTTACGAGAACACCTCCT
GTGGCATCGAGGGGGTTACCGAGGAGGCCAAGCTAGAAGGTACCTGTCCC
ATCCGGTCTGTCGAGAAAATTTCTTGTAAACATGCTCACGTCAATGTCCA
CAGTGAGGGCTCTACCAAGGTATGTGAGTTTTTGTTGCTTCCTCCCCCCT
CTTTCCTCGTTCATTCGCTTCTAGCCACTCCCGTTTCTCCTTCCTTTTCT
TCACTCACATCTAAGACCTCTATTTCTCCTCATTTGGATTTTCAAGTCAA
ATTTTCTGAAGATGCAAATGCCTTCTATTGCCCTCGATGCTTTTACTTCT
TAAAACTCAGCTGTTGCTTTTCTGCCTACCCTATACCAACCCACCCTCCT
TACAGCTACTCTTGAGGGGGAGTGAAGAAATGAGGTCCTTCGGGCTTAAC
ACCACGTGCCGCAACGTCCGCAATCACCGTCTGTTTCTCTCTAAGGACCA
GCAGCTGTTCGGACTTTCCGATTCGGAGCTCTTTTTGAGCAAGGAGGTCG
CAGGTTTGGTGGGATTGATGGTGACTTGGTTTATGGCCTTTCCTGAGTCA
ACCAGCGACCTGTCCTCGATGACTCGCACGGCGGCTAGCACACACGTGGT
TTTTATTTTCCTTCTTGTGGCCTATGTGCTGGCACTTTTCATGATCCTTG
TAATGCATTTCACGGCTTTGGCGGGGAAGAAGCACAACGGGTATTTGAAT
GTAAGGGTTCCTGAGAGGGAGGAATTGGCAGGGGACGATAAGAAAGGAGA
GAAGGGGAAGCACATGGAGGGAGCTACTGCAACAGTAGGAATCGAACAGC
AGCAATTCATGCCCACCGAGGCCCTGCTGCAAGCGCAAGAGTCCTTGGCG
GAGGCGAAGAAGGAGGGAGTTGGTGGTCCGTGCGATGTTGTGACAAATCA
TTTTGAAAAGGAGTGTCGAAAGGTGCAACATGCAGAGAGTTCGAGCCTTT
TCGAGGATGAGGGTTTAATTGGGACTGTAATTGCCAAGCTGCTGGTAGCG
GAAGACGAGGGAGTTGAGGCCGTCCCTCCTGTCTTCAATAACGTGGAGCG
CCGAAAGATGACTCTGAAGACTTGGACGAACTTCCGGATGATGACCAAAG
GCCCAGGCGGCCACAGACTCTCTGTGGCTCGCATGGATATGGCGCCTTCC
ACTTCTATCTCCTATGTCACTGGAGAAGGCGAGCGGAGCCGCAGTGAGTC
TGTCCTGCCTAGAGGAACGACATCCTTTTCGATCAATGTTGACGGCGCGG
TAGTGTTAACGGCCGCTCACAAGCCCAAGAAGATGGGCAAGATGGCCGCC
TTTCGGGCAAGGTGGAAGCGCGTCTTTCGAGTTCCAGTTCGCAAGAGCTC
GTTTTCCCATCGGGCCACAGCTGCTACTTCCTCGTGTGGCATGGCTTAGA
AAATGGGGGGACACTTGTACGTGCACGTGTGAGTGTATGTGCATGTGTCG
GTGTTTCCGCGTACATGTGCGCGCGGGTGCCTATGAGAGCG
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Coding sequence (CDS) from alignment at chr8:1170326..1172066+

>NO08G04110.1 ID=NO08G04110.1|Name=NO08G04110.1|organism=Nannochloropsis oceanica|type=CDS|length=1413bp|location=Sequence derived from alignment at chr8:1170326..1172066+ (Nannochloropsis oceanica)
ATGAATCTGTTAAAGTCGAGTCTTGTCTTCTCTTTTGCCTTCGGCATGGT
CTTCACCACCGCCTATACTGGCGTGCCCTTCGAGTACCGCGTCGGTATGG
AGCTGTCTAGCCATCAAGGTATCACGGCCCACATGCCCTCCTTAACCTTG
CATACAAATATTGATGCATTCTACCACCACCTCCACGGGCCGCATCTCGT
CCTTGCAGCCCCGGTGCTTACCCCTGCTACTCCTTACGAGAACACCTCCT
GTGGCATCGAGGGGGTTACCGAGGAGGCCAAGCTAGAAGGTACCTGTCCC
ATCCGGTCTGTCGAGAAAATTTCTTGTAAACATGCTCACGTCAATGTCCA
CAGTGAGGGCTCTACCAAGCTACTCTTGAGGGGGAGTGAAGAAATGAGGT
CCTTCGGGCTTAACACCACGTGCCGCAACGTCCGCAATCACCGTCTGTTT
CTCTCTAAGGACCAGCAGCTGTTCGGACTTTCCGATTCGGAGCTCTTTTT
GAGCAAGGAGGTCGCAGGTTTGGTGGGATTGATGGTGACTTGGTTTATGG
CCTTTCCTGAGTCAACCAGCGACCTGTCCTCGATGACTCGCACGGCGGCT
AGCACACACGTGGTTTTTATTTTCCTTCTTGTGGCCTATGTGCTGGCACT
TTTCATGATCCTTGTAATGCATTTCACGGCTTTGGCGGGGAAGAAGCACA
ACGGGTATTTGAATGTAAGGGTTCCTGAGAGGGAGGAATTGGCAGGGGAC
GATAAGAAAGGAGAGAAGGGGAAGCACATGGAGGGAGCTACTGCAACAGT
AGGAATCGAACAGCAGCAATTCATGCCCACCGAGGCCCTGCTGCAAGCGC
AAGAGTCCTTGGCGGAGGCGAAGAAGGAGGGAGTTGGTGGTCCGTGCGAT
GTTGTGACAAATCATTTTGAAAAGGAGTGTCGAAAGGTGCAACATGCAGA
GAGTTCGAGCCTTTTCGAGGATGAGGGTTTAATTGGGACTGTAATTGCCA
AGCTGCTGGTAGCGGAAGACGAGGGAGTTGAGGCCGTCCCTCCTGTCTTC
AATAACGTGGAGCGCCGAAAGATGACTCTGAAGACTTGGACGAACTTCCG
GATGATGACCAAAGGCCCAGGCGGCCACAGACTCTCTGTGGCTCGCATGG
ATATGGCGCCTTCCACTTCTATCTCCTATGTCACTGGAGAAGGCGAGCGG
AGCCGCAGTGAGTCTGTCCTGCCTAGAGGAACGACATCCTTTTCGATCAA
TGTTGACGGCGCGGTAGTGTTAACGGCCGCTCACAAGCCCAAGAAGATGG
GCAAGATGGCCGCCTTTCGGGCAAGGTGGAAGCGCGTCTTTCGAGTTCCA
GTTCGCAAGAGCTCGTTTTCCCATCGGGCCACAGCTGCTACTTCCTCGTG
TGGCATGGCTTAG
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Synonyms
Publications