NO08G03990, NO08G03990 (gene) Nannochloropsis oceanica

Overview
NameNO08G03990
Unique NameNO08G03990
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1042
Alignment locationchr8:1120464..1121505 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1120464..1121505 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO08G03990 vs. NCBI_GenBank
Match: EWM26861.1 (hypothetical protein Naga_100097g4 [Nannochloropsis gaditana])

HSP 1 Score: 67.8 bits (164), Expect = 4.100e-8
Identity = 40/91 (43.96%), Postives = 52/91 (57.14%), Query Frame = 0 
Query:    1 MSST--SEHFMIRQETPCGCIMEVSGDEAAGATLSEAS--KCPCTRCGKRCRCAEIKGYCDCAQRIEAAAKEHRPTMVTVTAPLGCVLELG 88
            M+ST  S+H ++R E PCGC++EV G   AGAT +  +  KC CT CG                R+EAAAK+ +PT +   AP GC LELG
Sbjct:   83 MASTCSSDHRVMRTEGPCGCVVEV-GSSQAGATPANTTSPKCSCTCCGDXXXXXXXXXXXXXXXRMEAAAKKDQPTTICAEAPKGCALELG 172
The following BLAST results are available for this feature:
BLAST of NO08G03990 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26861.14.100e-843.96hypothetical protein Naga_100097g4 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008597NSK008597Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03990.1NO08G03990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100097g4gene3675Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03990.1NO08G03990.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03990 ID=NO08G03990|Name=NO08G03990|organism=Nannochloropsis oceanica|type=gene|length=1042bp
ATGAGCAGCACAAGCGAGCATTTTATGATCCGTCAGGAAACCCCCTGTGG
GTGTATAATGGAAGTGAGTGGCGACGAAGCCGCGGGTGCTACTTTATCTG
AAGCTTCGAAGTGTCCCTGCACGAGATGCGGGAAACGCTGCCGCTGCGCC
GAGATTAAGGGATATTGCGACTGTGCCCAGCGCATTGAGGCTGCAGCCAA
GGAGCATAGACCCACGATGGTCACCGTGACGGCGCCTTTGGGATGCGTGT
TAGAATTGGGGGCGGACGACgtatgcgaaacttgtgggcgtaagggctgt
cgctgcatcgcatttaagggcagctgccattgcccggtggtgcatgagaa
atagaaggtgcagggaaaaggatggatggataagacaagacggatccagg
aagaaggaagaaggatatcaacaaaagaagagttaatacggagcggggac
aagataggtgcgggaaaaaagataaatgggtaagaaaagactgatcccag
aaaacgtagagggatgtcaataaaagaagcacgttgggcttgagtcgagg
gaaagttacgaacatgcagatgagaagccgaaagggagcacaagagtccg
tggacatataaaggaagaaatctactcgcttctccccatgcaaaccatcc
ctctcttttctcctccctacctttcataatactccatttaggagcacatt
taattcattaaaaaaaattaattatgtcgtttactctcctcttcctcctc
ctccttttagCAGCAGCAACAACAACAACAACAGCAGCAGCAGCAGGAGC
AGCAGCAGCAGCGGCAGCAGCAAAGCCCTCAATCCCCAATAACACCTCCG
CCCTCCAAATTCTTTCCCCGTCCTCTCCCCCATCTCTTCACCTTTCCTCC
TTCTCCTTCTCTCTTCCTCCAACCCTTCCCCTCTCACTTGATCGCTGCAT
GGCCTTTCGGCCCACTTGTGGTTGTTGAGGTTTTGAGGAAGACACATTCA
GAGAAGGTCATGAGAGTCATGTATCTGGAATATAAGGGGTAA
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protein sequence of NO08G03990.1

>NO08G03990.1-protein ID=NO08G03990.1-protein|Name=NO08G03990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MSSTSEHFMIRQETPCGCIMEVSGDEAAGATLSEASKCPCTRCGKRCRCA
EIKGYCDCAQRIEAAAKEHRPTMVTVTAPLGCVLELGADDQQQQQQQQQQ
QQEQQQQRQQQSPQSPITPPPSKFFPRPLPHLFTFPPSPSLFLQPFPSHL
IAAWPFGPLVVVEVLRKTHSEKVMRVMYLEYKG*
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Synonyms
Publications