NO08G03990.1, NO08G03990.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03990.1
Unique NameNO08G03990.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length552
Alignment locationchr8:1120464..1121505 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1120464..1121505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G03990.1 vs.
Match: EWM26861.1 (hypothetical protein Naga_100097g4 [Nannochloropsis gaditana])

HSP 1 Score: 101.7 bits (252), Expect = 2.500e-18
Identity = 51/94 (54.26%), Postives = 64/94 (68.09%), Query Frame = 0 
Query:    1 MSST--SEHFMIRQETPCGCIMEVSGDEAAGATLSEAS--KCPCTRCGKRCRCAEIKGYCDCAQRIEAAAKEHRPTMVTVTAPLGCVLELGADD 91
            M+ST  S+H ++R E PCGC++EV G   AGAT +  +  KC CT CG  CRC E KG CDCA+R+EAAAK+ +PT +   AP GC LELG  D
Sbjct:   83 MASTCSSDHRVMRTEGPCGCVVEV-GSSQAGATPANTTSPKCSCTCCGDNCRCTETKGRCDCAERMEAAAKKDQPTTICAEAPKGCALELGGSD 175
The following BLAST results are available for this feature:
BLAST of NO08G03990.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26861.12.500e-1854.26hypothetical protein Naga_100097g4 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03990NO08G03990Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03990.1NO08G03990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03990.1.cds1NO08G03990.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03990.1.cds2NO08G03990.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03990.1 ID=NO08G03990.1|Name=NO08G03990.1|organism=Nannochloropsis oceanica|type=mRNA|length=552bp
ATGAGCAGCACAAGCGAGCATTTTATGATCCGTCAGGAAACCCCCTGTGG
GTGTATAATGGAAGTGAGTGGCGACGAAGCCGCGGGTGCTACTTTATCTG
AAGCTTCGAAGTGTCCCTGCACGAGATGCGGGAAACGCTGCCGCTGCGCC
GAGATTAAGGGATATTGCGACTGTGCCCAGCGCATTGAGGCTGCAGCCAA
GGAGCATAGACCCACGATGGTCACCGTGACGGCGCCTTTGGGATGCGTGT
TAGAATTGGGGGCGGACGACCAGCAGCAACAACAACAACAACAGCAGCAG
CAGCAGGAGCAGCAGCAGCAGCGGCAGCAGCAAAGCCCTCAATCCCCAAT
AACACCTCCGCCCTCCAAATTCTTTCCCCGTCCTCTCCCCCATCTCTTCA
CCTTTCCTCCTTCTCCTTCTCTCTTCCTCCAACCCTTCCCCTCTCACTTG
ATCGCTGCATGGCCTTTCGGCCCACTTGTGGTTGTTGAGGTTTTGAGGAA
GACACATTCAGAGAAGGTCATGAGAGTCATGTATCTGGAATATAAGGGGT
AA
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protein sequence of NO08G03990.1

>NO08G03990.1-protein ID=NO08G03990.1-protein|Name=NO08G03990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MSSTSEHFMIRQETPCGCIMEVSGDEAAGATLSEASKCPCTRCGKRCRCA
EIKGYCDCAQRIEAAAKEHRPTMVTVTAPLGCVLELGADDQQQQQQQQQQ
QQEQQQQRQQQSPQSPITPPPSKFFPRPLPHLFTFPPSPSLFLQPFPSHL
IAAWPFGPLVVVEVLRKTHSEKVMRVMYLEYKG*
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mRNA from alignment at chr8:1120464..1121505-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03990.1 ID=NO08G03990.1|Name=NO08G03990.1|organism=Nannochloropsis oceanica|type=mRNA|length=1042bp|location=Sequence derived from alignment at chr8:1120464..1121505- (Nannochloropsis oceanica)
ATGAGCAGCACAAGCGAGCATTTTATGATCCGTCAGGAAACCCCCTGTGG
GTGTATAATGGAAGTGAGTGGCGACGAAGCCGCGGGTGCTACTTTATCTG
AAGCTTCGAAGTGTCCCTGCACGAGATGCGGGAAACGCTGCCGCTGCGCC
GAGATTAAGGGATATTGCGACTGTGCCCAGCGCATTGAGGCTGCAGCCAA
GGAGCATAGACCCACGATGGTCACCGTGACGGCGCCTTTGGGATGCGTGT
TAGAATTGGGGGCGGACGACGTATGCGAAACTTGTGGGCGTAAGGGCTGT
CGCTGCATCGCATTTAAGGGCAGCTGCCATTGCCCGGTGGTGCATGAGAA
ATAGAAGGTGCAGGGAAAAGGATGGATGGATAAGACAAGACGGATCCAGG
AAGAAGGAAGAAGGATATCAACAAAAGAAGAGTTAATACGGAGCGGGGAC
AAGATAGGTGCGGGAAAAAAGATAAATGGGTAAGAAAAGACTGATCCCAG
AAAACGTAGAGGGATGTCAATAAAAGAAGCACGTTGGGCTTGAGTCGAGG
GAAAGTTACGAACATGCAGATGAGAAGCCGAAAGGGAGCACAAGAGTCCG
TGGACATATAAAGGAAGAAATCTACTCGCTTCTCCCCATGCAAACCATCC
CTCTCTTTTCTCCTCCCTACCTTTCATAATACTCCATTTAGGAGCACATT
TAATTCATTAAAAAAAATTAATTATGTCGTTTACTCTCCTCTTCCTCCTC
CTCCTTTTAGCAGCAGCAACAACAACAACAACAGCAGCAGCAGCAGGAGC
AGCAGCAGCAGCGGCAGCAGCAAAGCCCTCAATCCCCAATAACACCTCCG
CCCTCCAAATTCTTTCCCCGTCCTCTCCCCCATCTCTTCACCTTTCCTCC
TTCTCCTTCTCTCTTCCTCCAACCCTTCCCCTCTCACTTGATCGCTGCAT
GGCCTTTCGGCCCACTTGTGGTTGTTGAGGTTTTGAGGAAGACACATTCA
GAGAAGGTCATGAGAGTCATGTATCTGGAATATAAGGGGTAA
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Coding sequence (CDS) from alignment at chr8:1120464..1121505-

>NO08G03990.1 ID=NO08G03990.1|Name=NO08G03990.1|organism=Nannochloropsis oceanica|type=CDS|length=552bp|location=Sequence derived from alignment at chr8:1120464..1121505- (Nannochloropsis oceanica)
ATGAGCAGCACAAGCGAGCATTTTATGATCCGTCAGGAAACCCCCTGTGG
GTGTATAATGGAAGTGAGTGGCGACGAAGCCGCGGGTGCTACTTTATCTG
AAGCTTCGAAGTGTCCCTGCACGAGATGCGGGAAACGCTGCCGCTGCGCC
GAGATTAAGGGATATTGCGACTGTGCCCAGCGCATTGAGGCTGCAGCCAA
GGAGCATAGACCCACGATGGTCACCGTGACGGCGCCTTTGGGATGCGTGT
TAGAATTGGGGGCGGACGACCAGCAGCAACAACAACAACAACAGCAGCAG
CAGCAGGAGCAGCAGCAGCAGCGGCAGCAGCAAAGCCCTCAATCCCCAAT
AACACCTCCGCCCTCCAAATTCTTTCCCCGTCCTCTCCCCCATCTCTTCA
CCTTTCCTCCTTCTCCTTCTCTCTTCCTCCAACCCTTCCCCTCTCACTTG
ATCGCTGCATGGCCTTTCGGCCCACTTGTGGTTGTTGAGGTTTTGAGGAA
GACACATTCAGAGAAGGTCATGAGAGTCATGTATCTGGAATATAAGGGGT
AA
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Synonyms
Publications