NO08G03950, NO08G03950 (gene) Nannochloropsis oceanica

Overview
NameNO08G03950
Unique NameNO08G03950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1829
Alignment locationchr8:1112726..1114554 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1112726..1114554 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO08G03950 vs. NCBI_GenBank
Match: XP_005853604.1 (hypothetical protein NGA_0429500 [Nannochloropsis gaditana CCMP526] >EKU22756.1 hypothetical protein NGA_0429500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 77.8 bits (190), Expect = 4.100e-11
Identity = 44/102 (43.14%), Postives = 58/102 (56.86%), Query Frame = 0 
Query:   44 PPVLPQDREDITEWFIRTSPLKVLMEVFHQLPPPSKSLDGEYLGELLDSGSDLSNLLAYTGFYNPEITGFWIGKGF--RAEEK--WGYNLFMVNQVLTRWVG 142
            PP     R ++TE+ +R++    L  +F  LPPPS  L GEYL E+LD+GS  +N+L + GF  P   G WIGK F    +EK  WGYN+F       RW G
Sbjct:   44 PPFNLLQRANVTEYALRSASFPSLFYLFLSLPPPSGPLHGEYLAEILDAGSLAANVLGWIGF-TPFFPGAWIGKSFVEATDEKDGWGYNVF-------RWFG 137
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BLAST of NO08G03950 vs. NCBI_GenBank
Match: EWM27381.1 (hypothetical protein Naga_100438g3 [Nannochloropsis gaditana])

HSP 1 Score: 77.8 bits (190), Expect = 4.100e-11
Identity = 44/102 (43.14%), Postives = 58/102 (56.86%), Query Frame = 0 
Query:   44 PPVLPQDREDITEWFIRTSPLKVLMEVFHQLPPPSKSLDGEYLGELLDSGSDLSNLLAYTGFYNPEITGFWIGKGF--RAEEK--WGYNLFMVNQVLTRWVG 142
            PP     R ++TE+ +R++    L  +F  LPPPS  L GEYL E+LD+GS  +N+L + GF  P   G WIGK F    +EK  WGYN+F       RW G
Sbjct:   56 PPFNLLQRANVTEYALRSASFPSLFYLFLSLPPPSGPLHGEYLAEILDAGSLAANVLGWIGF-TPFFPGAWIGKSFVEATDEKDGWGYNVF-------RWFG 149
The following BLAST results are available for this feature:
BLAST of NO08G03950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005853604.14.100e-1143.14hypothetical protein NGA_0429500 [Nannochloropsis ... [more]
EWM27381.14.100e-1143.14hypothetical protein Naga_100438g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583236gene_3734Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03950.1NO08G03950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO08G03950.2NO08G03950.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO08G03950.3NO08G03950.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03950.1NO08G03950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO08G03950.2NO08G03950.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO08G03950.3NO08G03950.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03950 ID=NO08G03950|Name=NO08G03950|organism=Nannochloropsis oceanica|type=gene|length=1829bp
ATTTAATTGCGTGCAGATGGTCCCCCTTATTGATCGTCCTTTTCTCAACG
GGCCTCTCCAGGGATTAGAGGAGTCAAAGGACTTCCAATCCATCCGCTTT
CTCGATGTTAAAGTTGTCATATTACTCGAAGGACAGAACTCAAGGCGAAC
ACAAGGCATCTGTGTGAACGATGAACGATAGCTACTCGCATATCGTAACC
AGCAATTTCTTTTGGTGTCCCCGCCAGCACAACATGTAAACATAGAGCCC
CAATTAATGAAGGAATTACACATAATACCTATGATGCCTACTCTCATTGA
TATCGCACAAATACGAACATACGCACACAAAGCGACACACAGCCCGCAAG
GCCACACAGACCCTCTTCTTATCGGATGGGTCAGGTATACCGGGGTCCCT
GTCGCTGCCTCCTCGTCCTTCTGATTGCATTTTTCAGTTTATGTCTCAAG
AAAGTCTCATGTTTTGGGCACGATTCCGCCCCAGGAGAAGCAGCAGGCCG
AAACCCTCCTGTCTTGCCACAGGATAGGGAAGATATAACCGAGTGGTTTA
TTCGAACGTCACCTCTCAAAGTATTGATGGAAGTCTTCCACCAGCTGCCA
CCACCTTCAAAGTCCTTGGATGGAGAGTACTTGGGAGAGTTGCTCGAGTA
AGTGAAATCTAAGAAAGAAGCAGAAGGCGATTTAGAATTCAGTTGTCCTT
CCTGCACCACATCCCTGCCCTCACTTCCTCCCTCCCTCCCTTCTCAGAAT
ATCAGCAGCCGCAGCCAATTTGACATGTTTCACAATGAACACTTCCTGCT
ATGTACTGCATTATTTTCTTCTCATATCCTCCTCTGTCATTTTCCTTGTC
CTCTTTCAAATCTCCACAGCTCCGGCAGCGACTTAAGTAACCTTTTGGCT
TACACAGGTTTCTACAATCCTGAAATAACAGGGTTTTGGATTGGCAAAGG
TTTTCGAGCGGAGGAAAAGTGGGGCTATAACCTTTTCATGGTGAACCAGG
TCTTGACACGgtgggtaggagacgaggaaggaagggcgaaaaaggcggca
ggaagggaaaatgaaaaagaggctcttacagatggggcgatatcttttca
atccgcgaatcacggcttcatttcaatgcatttatgtttttttgggcatt
tctgtcttctctttcctccttaacagGAAATACAAAATGATCGTCAGCTT
TAACGAGTCGGTGTGGGACGACAATCCAAGCTTCGTCCTCGATTACCGCG
GTCAAGATCACGTGCTGGGATACGCTCATATGAGAGATGAAGTTCGCGAA
ATAAGACCAGGGATGTTTCTAGGTATAGGAACGTGGGGATGGTCGACAGA
AATGCAAAGGCAGCCAGCACCGTTCATCTTGCGGGGGCCTAAGAATCCTG
CGGCATCCGAAAATTTCAAGGAGGAGAATGGGATTACTTTCCGCGAGTTC
TCATGAACTACGCGCCCTTTTTTTGGCTTGAGCGCTTAAATTAATATGTT
CATCAATATGTGCGATGATAAAAGAAGGGAGATCGAGAATGCAGGCAGCA
ATGGGAGACCGCGGGCGGGGGGCCCGTTTCAAGGTGCATATCCATGTGTG
TGAGATGCCAGCCAAAATAAATAGAGGGGAAAAGAGAAAGTGTTCGAGAA
ATCAAAAGAGAATGCGGGCAAAGAATGGCCTTTGGGCCGGGACAGTTAAA
ATTCAAATAGAATCAAGAATTTTAGGCCGGTAACGAGCAATTTAATGTTA
TAATATGATTGTAATGCAATGTAATAAAGGAGAAGAAGAGGGAGAAGGCA
AATTCTTCAAAGAACATGACAATCGCAGA
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protein sequence of NO08G03950.1

>NO08G03950.1-protein ID=NO08G03950.1-protein|Name=NO08G03950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MGQVYRGPCRCLLVLLIAFFSLCLKKVSCFGHDSAPGEAAGRNPPVLPQD
REDITEWFIRTSPLKVLMEVFHQLPPPSKSLDGEYLGELLDSGSDLSNLL
AYTGFYNPEITGFWIGKGFRAEEKWGYNLFMVNQVLTRKYKMIVSFNESV
WDDNPSFVLDYRGQDHVLGYAHMRDEVREIRPGMFLGIGTWGWSTEMQRQ
PAPFILRGPKNPAASENFKEENGITFREFS*
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protein sequence of NO08G03950.2

>NO08G03950.2-protein ID=NO08G03950.2-protein|Name=NO08G03950.2|organism=Nannochloropsis oceanica|type=polypeptide|length=192bp
MGQVYRGPCRCLLVLLIAFFSLCLKKVSCFGHDSAPGEAAGRNPPVLPQD
REDITEWFIRTSPLKVLMEVFHQLPPPSKSLDGEYLGELLDSGSDLSNLL
AYTGFYNPEITGFWIGKGFRAEEKWGYNLFMVNQVLTRWVGDEEGRAKKA
AGRENEKEALTDGAISFQSANHGFISMHLCFFGHFCLLFPP*
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protein sequence of NO08G03950.3

>NO08G03950.3-protein ID=NO08G03950.3-protein|Name=NO08G03950.3|organism=Nannochloropsis oceanica|type=polypeptide|length=172bp
MFHNEHFLLCTALFSSHILLCHFPCPLSNLHSSGSDLSNLLAYTGFYNPE
ITGFWIGKGFRAEEKWGYNLFMVNQVLTRKYKMIVSFNESVWDDNPSFVL
DYRGQDHVLGYAHMRDEVREIRPGMFLGIGTWGWSTEMQRQPAPFILRGP
KNPAASENFKEENGITFREFS*
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Synonyms
Publications