NO08G03950.1, NO08G03950.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03950.1
Unique NameNO08G03950.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1441
Alignment locationchr8:1112726..1114554 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1112726..1114554 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G03950.1 vs.
Match: EWM27381.1 (hypothetical protein Naga_100438g3 [Nannochloropsis gaditana])

HSP 1 Score: 157.1 bits (396), Expect = 6.400e-35
Identity = 82/172 (47.67%), Postives = 108/172 (62.79%), Query Frame = 0 
Query:   44 PPVLPQDREDITEWFIRTSPLKVLMEVFHQLPPPSKSLDGEYLGELLDSGSDLSNLLAYTGFYNPEITGFWIGKGF--RAEEK--WGYNLFM-VNQVLTRKYKMIVSFNESVWDDNPSFVLDYRGQDHVLGYAHMRDEVREIRPGMFLGIGTWGWSTEMQR-QPAPFILRGP 210
            PP     R ++TE+ +R++    L  +F  LPPPS  L GEYL E+LD+GS  +N+L + GF  P   G WIGK F    +EK  WGYN+F      L R++KM      SVWD  PSF L Y G+ H+LG   MRDEVREI+PG++LG+GT+G+S   +R  P PF+LRGP
Sbjct:   56 PPFNLLQRANVTEYALRSASFPSLFYLFLSLPPPSGPLHGEYLAEILDAGSLAANVLGWIGF-TPFFPGAWIGKSFVEATDEKDGWGYNVFRWFGARLDRRFKMHTCITTSVWDGRPSFQLQYAGETHLLGRLRMRDEVREIQPGLYLGMGTFGYSEAKRRGDPLPFLLRGP 226
The following BLAST results are available for this feature:
BLAST of NO08G03950.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27381.16.400e-3547.67hypothetical protein Naga_100438g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03950NO08G03950Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03950.1NO08G03950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03950.1.cds1NO08G03950.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03950.1.cds2NO08G03950.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03950.1.cds3NO08G03950.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03950.1 ID=NO08G03950.1|Name=NO08G03950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1441bp
ATTTAATTGCGTGCAGATGGTCCCCCTTATTGATCGTCCTTTTCTCAACG
GGCCTCTCCAGGGATTAGAGGAGTCAAAGGACTTCCAATCCATCCGCTTT
CTCGATGTTAAAGTTGTCATATTACTCGAAGGACAGAACTCAAGGCGAAC
ACAAGGCATCTGTGTGAACGATGAACGATAGCTACTCGCATATCGTAACC
AGCAATTTCTTTTGGTGTCCCCGCCAGCACAACATGTAAACATAGAGCCC
CAATTAATGAAGGAATTACACATAATACCTATGATGCCTACTCTCATTGA
TATCGCACAAATACGAACATACGCACACAAAGCGACACACAGCCCGCAAG
GCCACACAGACCCTCTTCTTATCGGATGGGTCAGGTATACCGGGGTCCCT
GTCGCTGCCTCCTCGTCCTTCTGATTGCATTTTTCAGTTTATGTCTCAAG
AAAGTCTCATGTTTTGGGCACGATTCCGCCCCAGGAGAAGCAGCAGGCCG
AAACCCTCCTGTCTTGCCACAGGATAGGGAAGATATAACCGAGTGGTTTA
TTCGAACGTCACCTCTCAAAGTATTGATGGAAGTCTTCCACCAGCTGCCA
CCACCTTCAAAGTCCTTGGATGGAGAGTACTTGGGAGAGTTGCTCGACTC
CGGCAGCGACTTAAGTAACCTTTTGGCTTACACAGGTTTCTACAATCCTG
AAATAACAGGGTTTTGGATTGGCAAAGGTTTTCGAGCGGAGGAAAAGTGG
GGCTATAACCTTTTCATGGTGAACCAGGTCTTGACACGGAAATACAAAAT
GATCGTCAGCTTTAACGAGTCGGTGTGGGACGACAATCCAAGCTTCGTCC
TCGATTACCGCGGTCAAGATCACGTGCTGGGATACGCTCATATGAGAGAT
GAAGTTCGCGAAATAAGACCAGGGATGTTTCTAGGTATAGGAACGTGGGG
ATGGTCGACAGAAATGCAAAGGCAGCCAGCACCGTTCATCTTGCGGGGGC
CTAAGAATCCTGCGGCATCCGAAAATTTCAAGGAGGAGAATGGGATTACT
TTCCGCGAGTTCTCATGAACTACGCGCCCTTTTTTTGGCTTGAGCGCTTA
AATTAATATGTTCATCAATATGTGCGATGATAAAAGAAGGGAGATCGAGA
ATGCAGGCAGCAATGGGAGACCGCGGGCGGGGGGCCCGTTTCAAGGTGCA
TATCCATGTGTGTGAGATGCCAGCCAAAATAAATAGAGGGGAAAAGAGAA
AGTGTTCGAGAAATCAAAAGAGAATGCGGGCAAAGAATGGCCTTTGGGCC
GGGACAGTTAAAATTCAAATAGAATCAAGAATTTTAGGCCGGTAACGAGC
AATTTAATGTTATAATATGATTGTAATGCAATGTAATAAAGGAGAAGAAG
AGGGAGAAGGCAAATTCTTCAAAGAACATGACAATCGCAGA
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protein sequence of NO08G03950.1

>NO08G03950.1-protein ID=NO08G03950.1-protein|Name=NO08G03950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MGQVYRGPCRCLLVLLIAFFSLCLKKVSCFGHDSAPGEAAGRNPPVLPQD
REDITEWFIRTSPLKVLMEVFHQLPPPSKSLDGEYLGELLDSGSDLSNLL
AYTGFYNPEITGFWIGKGFRAEEKWGYNLFMVNQVLTRKYKMIVSFNESV
WDDNPSFVLDYRGQDHVLGYAHMRDEVREIRPGMFLGIGTWGWSTEMQRQ
PAPFILRGPKNPAASENFKEENGITFREFS*
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mRNA from alignment at chr8:1112726..1114554+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03950.1 ID=NO08G03950.1|Name=NO08G03950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1829bp|location=Sequence derived from alignment at chr8:1112726..1114554+ (Nannochloropsis oceanica)
ATTTAATTGCGTGCAGATGGTCCCCCTTATTGATCGTCCTTTTCTCAACG
GGCCTCTCCAGGGATTAGAGGAGTCAAAGGACTTCCAATCCATCCGCTTT
CTCGATGTTAAAGTTGTCATATTACTCGAAGGACAGAACTCAAGGCGAAC
ACAAGGCATCTGTGTGAACGATGAACGATAGCTACTCGCATATCGTAACC
AGCAATTTCTTTTGGTGTCCCCGCCAGCACAACATGTAAACATAGAGCCC
CAATTAATGAAGGAATTACACATAATACCTATGATGCCTACTCTCATTGA
TATCGCACAAATACGAACATACGCACACAAAGCGACACACAGCCCGCAAG
GCCACACAGACCCTCTTCTTATCGGATGGGTCAGGTATACCGGGGTCCCT
GTCGCTGCCTCCTCGTCCTTCTGATTGCATTTTTCAGTTTATGTCTCAAG
AAAGTCTCATGTTTTGGGCACGATTCCGCCCCAGGAGAAGCAGCAGGCCG
AAACCCTCCTGTCTTGCCACAGGATAGGGAAGATATAACCGAGTGGTTTA
TTCGAACGTCACCTCTCAAAGTATTGATGGAAGTCTTCCACCAGCTGCCA
CCACCTTCAAAGTCCTTGGATGGAGAGTACTTGGGAGAGTTGCTCGAGTA
AGTGAAATCTAAGAAAGAAGCAGAAGGCGATTTAGAATTCAGTTGTCCTT
CCTGCACCACATCCCTGCCCTCACTTCCTCCCTCCCTCCCTTCTCAGAAT
ATCAGCAGCCGCAGCCAATTTGACATGTTTCACAATGAACACTTCCTGCT
ATGTACTGCATTATTTTCTTCTCATATCCTCCTCTGTCATTTTCCTTGTC
CTCTTTCAAATCTCCACAGCTCCGGCAGCGACTTAAGTAACCTTTTGGCT
TACACAGGTTTCTACAATCCTGAAATAACAGGGTTTTGGATTGGCAAAGG
TTTTCGAGCGGAGGAAAAGTGGGGCTATAACCTTTTCATGGTGAACCAGG
TCTTGACACGGTGGGTAGGAGACGAGGAAGGAAGGGCGAAAAAGGCGGCA
GGAAGGGAAAATGAAAAAGAGGCTCTTACAGATGGGGCGATATCTTTTCA
ATCCGCGAATCACGGCTTCATTTCAATGCATTTATGTTTTTTTGGGCATT
TCTGTCTTCTCTTTCCTCCTTAACAGGAAATACAAAATGATCGTCAGCTT
TAACGAGTCGGTGTGGGACGACAATCCAAGCTTCGTCCTCGATTACCGCG
GTCAAGATCACGTGCTGGGATACGCTCATATGAGAGATGAAGTTCGCGAA
ATAAGACCAGGGATGTTTCTAGGTATAGGAACGTGGGGATGGTCGACAGA
AATGCAAAGGCAGCCAGCACCGTTCATCTTGCGGGGGCCTAAGAATCCTG
CGGCATCCGAAAATTTCAAGGAGGAGAATGGGATTACTTTCCGCGAGTTC
TCATGAACTACGCGCCCTTTTTTTGGCTTGAGCGCTTAAATTAATATGTT
CATCAATATGTGCGATGATAAAAGAAGGGAGATCGAGAATGCAGGCAGCA
ATGGGAGACCGCGGGCGGGGGGCCCGTTTCAAGGTGCATATCCATGTGTG
TGAGATGCCAGCCAAAATAAATAGAGGGGAAAAGAGAAAGTGTTCGAGAA
ATCAAAAGAGAATGCGGGCAAAGAATGGCCTTTGGGCCGGGACAGTTAAA
ATTCAAATAGAATCAAGAATTTTAGGCCGGTAACGAGCAATTTAATGTTA
TAATATGATTGTAATGCAATGTAATAAAGGAGAAGAAGAGGGAGAAGGCA
AATTCTTCAAAGAACATGACAATCGCAGA
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Coding sequence (CDS) from alignment at chr8:1112726..1114554+

>NO08G03950.1 ID=NO08G03950.1|Name=NO08G03950.1|organism=Nannochloropsis oceanica|type=CDS|length=693bp|location=Sequence derived from alignment at chr8:1112726..1114554+ (Nannochloropsis oceanica)
ATGGGTCAGGTATACCGGGGTCCCTGTCGCTGCCTCCTCGTCCTTCTGAT
TGCATTTTTCAGTTTATGTCTCAAGAAAGTCTCATGTTTTGGGCACGATT
CCGCCCCAGGAGAAGCAGCAGGCCGAAACCCTCCTGTCTTGCCACAGGAT
AGGGAAGATATAACCGAGTGGTTTATTCGAACGTCACCTCTCAAAGTATT
GATGGAAGTCTTCCACCAGCTGCCACCACCTTCAAAGTCCTTGGATGGAG
AGTACTTGGGAGAGTTGCTCGACTCCGGCAGCGACTTAAGTAACCTTTTG
GCTTACACAGGTTTCTACAATCCTGAAATAACAGGGTTTTGGATTGGCAA
AGGTTTTCGAGCGGAGGAAAAGTGGGGCTATAACCTTTTCATGGTGAACC
AGGTCTTGACACGGAAATACAAAATGATCGTCAGCTTTAACGAGTCGGTG
TGGGACGACAATCCAAGCTTCGTCCTCGATTACCGCGGTCAAGATCACGT
GCTGGGATACGCTCATATGAGAGATGAAGTTCGCGAAATAAGACCAGGGA
TGTTTCTAGGTATAGGAACGTGGGGATGGTCGACAGAAATGCAAAGGCAG
CCAGCACCGTTCATCTTGCGGGGGCCTAAGAATCCTGCGGCATCCGAAAA
TTTCAAGGAGGAGAATGGGATTACTTTCCGCGAGTTCTCATGA
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Synonyms
Publications