NO08G03750, NO08G03750 (gene) Nannochloropsis oceanica

Overview
NameNO08G03750
Unique NameNO08G03750
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1883
Alignment locationchr8:1055831..1057713 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1055831..1057713 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO08G03750 vs. NCBI_GenBank
Match: EWM26842.1 (hypothetical protein Naga_100263g1 [Nannochloropsis gaditana])

HSP 1 Score: 82.8 bits (203), Expect = 3.800e-12
Identity = 65/195 (33.33%), Postives = 95/195 (48.72%), Query Frame = 0 
Query:    1 MQLYTLLAAAKGGGDWEIVAEGGAADLTGNYQRIARRLVAAAPK---------RLPGI---QIEAGIEKCNEXXXXXXXXXXXXXXXVKGAGSDVKGRPPSMSGILRRSYVAEGHNFDYIVFQAPLQTSSPPKQQKATSRVCSPSSSYSPSFVPSSIALLSLCVSDQDSSTQESFTFLETIKKSVVAAIQCSTST 184
            M LY +LAAA    +WE VAE   ADL GN + +ARRLVAAAPK         + P     + E   ++C E                 G G   +    S    LR SY A+ + F+Y++ +AP ++ +PP      S+ C       PS+ P  +ALL LC+ D+DS   +SF FLE +    + +++ S S+
Sbjct:    1 MHLYIMLAAASSADEWETVAEACVADLRGNVRHVARRLVAAAPKPPFLDKKGDKFPHASQKRPETAQDQCKETGCVGKEGGRE-----NGDGGQAQNACSSRG--LRGSYAADEYMFNYLIVRAP-RSCTPPAPHAFASQCC-------PSW-PGEMALLVLCLVDRDSPVAQSFEFLEGLGARALGSLRRSHSS 179
The following BLAST results are available for this feature:
BLAST of NO08G03750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26842.13.800e-1233.33hypothetical protein Naga_100263g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03750.1NO08G03750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100263g1gene3697Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03750.1NO08G03750.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03750 ID=NO08G03750|Name=NO08G03750|organism=Nannochloropsis oceanica|type=gene|length=1883bp
ATGCAGCTCTACACGCTCCTAGCCGCGGCCAAGGGCGGCGGGGACTGGGA
Ggtacgcatgaaatcgttcgaaaaaggtgctttgagtgagatggcgtccc
ctccatgccgtcctccgcttaccccctctcggaccccatcttttattttt
cgactttggccactcactctttcgtccacccgccataatatcagATTGTG
GCAGAAGGAGGCGCTGCGGATTTGACAGGGAACTACCAACGTATTGCCCG
ACGTCTCGTGGCGGCCGCTCCCAAACGATTGCCTGGCATCCAAATCGAAG
CCGGGATTGAAAAATGTAACGAGAAAGGAGGAGGAGGAGGAGGAGGAGGA
GAAGGAGGAAAGGAAGAAGTAAAAGGAGCTGGGAGTGATGTGAAGGGAAG
ACCTCCGTCAATGTCAGGGATTCTCCGGCGGAGCTATGTTGCGGAGGGTC
ACAACTTTGATTACATTGTGTTTCAAGCGCCTCTGCAGACGTCTTCGCCC
CCTAAGCAGCAAAAGGCGACATCCAGGGTCTGCTCTCCCTCTTCCTCCTA
CTCCCCCTCATTCGTGCCCTCGTCCATCGCGCTGCTTTCTCTGTGCGTGT
CGGACCAGGATTCCTCTACCCAGGAAAGCTTCACCTTTCTCGAAACGATC
AAAAAGAGCGTGGTGGCTGCCATCCAGTGCAGCACCAGCACCAACAGCTG
TAATGGTAGCAGCAACAGCAACAGCTCTCCTTCCTCCCTTACCTCTGACT
TTTCCCGAGCGCAAGATGAAACATTTATTTCCTCCTTCCTCCCTATTCTC
CGGGTCTCCTTCTACGCGGCCGTGACGGAGCAAAATGCAAAGTCAGATGC
CCCTCTCTCCTTCCCTTGCCCCTCCTTGGCCCTTTCCCCCTCCTCCCCCT
TACTCTTGTATTGCCCAAAGCCACGGGCTCAGGCCGTGATGTCACCCCCT
GAATCCCCTCGCCCCTCTTCCTGGTCCCTTTCCACTTCTGCATCCATCGC
AACGGCTGCTGACGCCACAGCTGCTTCCTCCTCTTCCCGTCCCTTCTCTT
GGAGCCATGCCCTGACAAGTAGGAGAGTCATCAGTACCAGCAGTACTAGC
AGCACCAGCAGCACCAGCACCAGGATCAGGTGCAGCAATAGCAGCAGTAG
CCCTGTAGCAGCCGCGTCGGTGGCGTCGGTGACGTATTTTGATGCCGCCT
GGGAGAACGCTTGGCCCACCACTACAGCCACCAATAGAACCACTGTCACG
GCCACTGCCTTCCCCAGTTTCTCCGCTATGCAAAAAGATGATCCCTTTAG
TGTTATCGACAAAAGCAGCCGCAGGAGCAGCTGTAGTATCCACTGTGGAA
AGAGCATCAGTGGTGATGGAGTCAACACTTCTCCCCTCCTCGCCCCTCCA
CCCAAGGACGTGGCCCGTCGGAGCTTCCGTGGAAGCAGCACAAGCAACAG
CAGCAGCAACGACAGGCCACTGTCAACAACTCTCGAAGAAGTGTCATTCC
TCCAAACACTCTCCCCTCCCATCGTCCGGGAGCCTCCTTCCGTTATCAAG
AAATTTACATTCCATTCTTCTGTCCCCGTATCGTCTCCTCCCTCCCATCT
TTCTCCTCCTGCCCCCCCCTTCCACCATCACCTCCACTTCGCCCCATCAG
CGGAGGCGATAGTGAAAGCTGCCTTCTACTCGGAGAGGAGAATGAAGACG
AGGACGAGGAGAAGGATGGAAACGTTGAAGGGGAGGGAGGAAGGGAGGGA
GGGCAGAGGACTGGACTGGCATTCGACATGCTGGAACTCTCCTCGGTCCT
TTCCTTGTCAAGATCAGGCAAGCAGCAGCAGCAGCAGCAGCAGCAACAGC
AACCACCACGATCTCCCGCCAGCGACACGCTAA
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protein sequence of NO08G03750.1

>NO08G03750.1-protein ID=NO08G03750.1-protein|Name=NO08G03750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=580bp
MQLYTLLAAAKGGGDWEIVAEGGAADLTGNYQRIARRLVAAAPKRLPGIQ
IEAGIEKCNEKGGGGGGGGEGGKEEVKGAGSDVKGRPPSMSGILRRSYVA
EGHNFDYIVFQAPLQTSSPPKQQKATSRVCSPSSSYSPSFVPSSIALLSL
CVSDQDSSTQESFTFLETIKKSVVAAIQCSTSTNSCNGSSNSNSSPSSLT
SDFSRAQDETFISSFLPILRVSFYAAVTEQNAKSDAPLSFPCPSLALSPS
SPLLLYCPKPRAQAVMSPPESPRPSSWSLSTSASIATAADATAASSSSRP
FSWSHALTSRRVISTSSTSSTSSTSTRIRCSNSSSSPVAAASVASVTYFD
AAWENAWPTTTATNRTTVTATAFPSFSAMQKDDPFSVIDKSSRRSSCSIH
CGKSISGDGVNTSPLLAPPPKDVARRSFRGSSTSNSSSNDRPLSTTLEEV
SFLQTLSPPIVREPPSVIKKFTFHSSVPVSSPPSHLSPPAPPFHHHLHFA
PSAEAIVKAAFYSERRMKTRTRRRMETLKGREEGREGRGLDWHSTCWNSP
RSFPCQDQASSSSSSSSNSNHHDLPPATR*
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Synonyms
Publications