NO08G03750.1, NO08G03750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03750.1
Unique NameNO08G03750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1740
Alignment locationchr8:1055831..1057713 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1055831..1057713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G03750.1 vs.
Match: EWM26842.1 (hypothetical protein Naga_100263g1 [Nannochloropsis gaditana])

HSP 1 Score: 73.6 bits (179), Expect = 2.300e-9
Identity = 95/307 (30.94%), Postives = 142/307 (46.25%), Query Frame = 0 
Query:    1 MQLYTLLAAAKGGGDWEIVAEGGAADLTGNYQRIARRLVAAAPK---------RLPGI---QIEAGIEKCNEKGGGGGGGGEGGKEEVKGAGSDVKGRPPSMSGILRRSYVAEGHNFDYIVFQAPLQTSSPPKQQKATSRVCSPSSSYSPSFVPSSIALLSLCVSDQDSSTQESFTFLETIKKSVVAAIQCSTST----NSCNGSSNSNSSPSSLTSDFSRAQD-----ETFISSFLPILRVSFYA---AVTEQNAKSDAPLSF--------PCPSLAL-SPSSPLLLYCPKPRAQAVMSPPESPRP 275
            M LY +LAAA    +WE VAE   ADL GN + +ARRLVAAAPK         + P     + E   ++C E    G  G EGG+E   G G   +    S    LR SY A+ + F+Y++ +AP ++ +PP      S+ C       PS+ P  +ALL LC+ D+DS   +SF FLE +    + +++ S S+         ++N+ S  S L  D S A           +S L +LR  ++    A T     + AP S           P +++ +P  P     P+  + ++  PP  P P
Sbjct:    1 MHLYIMLAAASSADEWETVAEACVADLRGNVRHVARRLVAAAPKPPFLDKKGDKFPHASQKRPETAQDQCKET---GCVGKEGGRE--NGDGGQAQNACSSRG--LRGSYAADEYMFNYLIVRAP-RSCTPPAPHAFASQCC-------PSW-PGEMALLVLCLVDRDSPVAQSFEFLEGLGARALGSLRRSHSSTCDEKKLEMATNAVSEISPLQEDHSDAGRWPRTLSRLHTSSLAVLRDYYHGCNQAYTIFPFSASAPPSHATLLPPAQSSPFISITAPPPPFFPASPRNPSPSLHLPPPRPPP 291
The following BLAST results are available for this feature:
BLAST of NO08G03750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26842.12.300e-930.94hypothetical protein Naga_100263g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03750NO08G03750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03750.1NO08G03750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03750.1.cds1NO08G03750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03750.1.cds2NO08G03750.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03750.1 ID=NO08G03750.1|Name=NO08G03750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1740bp
ATGCAGCTCTACACGCTCCTAGCCGCGGCCAAGGGCGGCGGGGACTGGGA
GATTGTGGCAGAAGGAGGCGCTGCGGATTTGACAGGGAACTACCAACGTA
TTGCCCGACGTCTCGTGGCGGCCGCTCCCAAACGATTGCCTGGCATCCAA
ATCGAAGCCGGGATTGAAAAATGTAACGAGAAAGGAGGAGGAGGAGGAGG
AGGAGGAGAAGGAGGAAAGGAAGAAGTAAAAGGAGCTGGGAGTGATGTGA
AGGGAAGACCTCCGTCAATGTCAGGGATTCTCCGGCGGAGCTATGTTGCG
GAGGGTCACAACTTTGATTACATTGTGTTTCAAGCGCCTCTGCAGACGTC
TTCGCCCCCTAAGCAGCAAAAGGCGACATCCAGGGTCTGCTCTCCCTCTT
CCTCCTACTCCCCCTCATTCGTGCCCTCGTCCATCGCGCTGCTTTCTCTG
TGCGTGTCGGACCAGGATTCCTCTACCCAGGAAAGCTTCACCTTTCTCGA
AACGATCAAAAAGAGCGTGGTGGCTGCCATCCAGTGCAGCACCAGCACCA
ACAGCTGTAATGGTAGCAGCAACAGCAACAGCTCTCCTTCCTCCCTTACC
TCTGACTTTTCCCGAGCGCAAGATGAAACATTTATTTCCTCCTTCCTCCC
TATTCTCCGGGTCTCCTTCTACGCGGCCGTGACGGAGCAAAATGCAAAGT
CAGATGCCCCTCTCTCCTTCCCTTGCCCCTCCTTGGCCCTTTCCCCCTCC
TCCCCCTTACTCTTGTATTGCCCAAAGCCACGGGCTCAGGCCGTGATGTC
ACCCCCTGAATCCCCTCGCCCCTCTTCCTGGTCCCTTTCCACTTCTGCAT
CCATCGCAACGGCTGCTGACGCCACAGCTGCTTCCTCCTCTTCCCGTCCC
TTCTCTTGGAGCCATGCCCTGACAAGTAGGAGAGTCATCAGTACCAGCAG
TACTAGCAGCACCAGCAGCACCAGCACCAGGATCAGGTGCAGCAATAGCA
GCAGTAGCCCTGTAGCAGCCGCGTCGGTGGCGTCGGTGACGTATTTTGAT
GCCGCCTGGGAGAACGCTTGGCCCACCACTACAGCCACCAATAGAACCAC
TGTCACGGCCACTGCCTTCCCCAGTTTCTCCGCTATGCAAAAAGATGATC
CCTTTAGTGTTATCGACAAAAGCAGCCGCAGGAGCAGCTGTAGTATCCAC
TGTGGAAAGAGCATCAGTGGTGATGGAGTCAACACTTCTCCCCTCCTCGC
CCCTCCACCCAAGGACGTGGCCCGTCGGAGCTTCCGTGGAAGCAGCACAA
GCAACAGCAGCAGCAACGACAGGCCACTGTCAACAACTCTCGAAGAAGTG
TCATTCCTCCAAACACTCTCCCCTCCCATCGTCCGGGAGCCTCCTTCCGT
TATCAAGAAATTTACATTCCATTCTTCTGTCCCCGTATCGTCTCCTCCCT
CCCATCTTTCTCCTCCTGCCCCCCCCTTCCACCATCACCTCCACTTCGCC
CCATCAGCGGAGGCGATAGTGAAAGCTGCCTTCTACTCGGAGAGGAGAAT
GAAGACGAGGACGAGGAGAAGGATGGAAACGTTGAAGGGGAGGGAGGAAG
GGAGGGAGGGCAGAGGACTGGACTGGCATTCGACATGCTGGAACTCTCCT
CGGTCCTTTCCTTGTCAAGATCAGGCAAGCAGCAGCAGCAGCAGCAGCAG
CAACAGCAACCACCACGATCTCCCGCCAGCGACACGCTAA
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protein sequence of NO08G03750.1

>NO08G03750.1-protein ID=NO08G03750.1-protein|Name=NO08G03750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=580bp
MQLYTLLAAAKGGGDWEIVAEGGAADLTGNYQRIARRLVAAAPKRLPGIQ
IEAGIEKCNEKGGGGGGGGEGGKEEVKGAGSDVKGRPPSMSGILRRSYVA
EGHNFDYIVFQAPLQTSSPPKQQKATSRVCSPSSSYSPSFVPSSIALLSL
CVSDQDSSTQESFTFLETIKKSVVAAIQCSTSTNSCNGSSNSNSSPSSLT
SDFSRAQDETFISSFLPILRVSFYAAVTEQNAKSDAPLSFPCPSLALSPS
SPLLLYCPKPRAQAVMSPPESPRPSSWSLSTSASIATAADATAASSSSRP
FSWSHALTSRRVISTSSTSSTSSTSTRIRCSNSSSSPVAAASVASVTYFD
AAWENAWPTTTATNRTTVTATAFPSFSAMQKDDPFSVIDKSSRRSSCSIH
CGKSISGDGVNTSPLLAPPPKDVARRSFRGSSTSNSSSNDRPLSTTLEEV
SFLQTLSPPIVREPPSVIKKFTFHSSVPVSSPPSHLSPPAPPFHHHLHFA
PSAEAIVKAAFYSERRMKTRTRRRMETLKGREEGREGRGLDWHSTCWNSP
RSFPCQDQASSSSSSSSNSNHHDLPPATR*
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mRNA from alignment at chr8:1055831..1057713-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03750.1 ID=NO08G03750.1|Name=NO08G03750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1883bp|location=Sequence derived from alignment at chr8:1055831..1057713- (Nannochloropsis oceanica)
ATGCAGCTCTACACGCTCCTAGCCGCGGCCAAGGGCGGCGGGGACTGGGA
GGTACGCATGAAATCGTTCGAAAAAGGTGCTTTGAGTGAGATGGCGTCCC
CTCCATGCCGTCCTCCGCTTACCCCCTCTCGGACCCCATCTTTTATTTTT
CGACTTTGGCCACTCACTCTTTCGTCCACCCGCCATAATATCAGATTGTG
GCAGAAGGAGGCGCTGCGGATTTGACAGGGAACTACCAACGTATTGCCCG
ACGTCTCGTGGCGGCCGCTCCCAAACGATTGCCTGGCATCCAAATCGAAG
CCGGGATTGAAAAATGTAACGAGAAAGGAGGAGGAGGAGGAGGAGGAGGA
GAAGGAGGAAAGGAAGAAGTAAAAGGAGCTGGGAGTGATGTGAAGGGAAG
ACCTCCGTCAATGTCAGGGATTCTCCGGCGGAGCTATGTTGCGGAGGGTC
ACAACTTTGATTACATTGTGTTTCAAGCGCCTCTGCAGACGTCTTCGCCC
CCTAAGCAGCAAAAGGCGACATCCAGGGTCTGCTCTCCCTCTTCCTCCTA
CTCCCCCTCATTCGTGCCCTCGTCCATCGCGCTGCTTTCTCTGTGCGTGT
CGGACCAGGATTCCTCTACCCAGGAAAGCTTCACCTTTCTCGAAACGATC
AAAAAGAGCGTGGTGGCTGCCATCCAGTGCAGCACCAGCACCAACAGCTG
TAATGGTAGCAGCAACAGCAACAGCTCTCCTTCCTCCCTTACCTCTGACT
TTTCCCGAGCGCAAGATGAAACATTTATTTCCTCCTTCCTCCCTATTCTC
CGGGTCTCCTTCTACGCGGCCGTGACGGAGCAAAATGCAAAGTCAGATGC
CCCTCTCTCCTTCCCTTGCCCCTCCTTGGCCCTTTCCCCCTCCTCCCCCT
TACTCTTGTATTGCCCAAAGCCACGGGCTCAGGCCGTGATGTCACCCCCT
GAATCCCCTCGCCCCTCTTCCTGGTCCCTTTCCACTTCTGCATCCATCGC
AACGGCTGCTGACGCCACAGCTGCTTCCTCCTCTTCCCGTCCCTTCTCTT
GGAGCCATGCCCTGACAAGTAGGAGAGTCATCAGTACCAGCAGTACTAGC
AGCACCAGCAGCACCAGCACCAGGATCAGGTGCAGCAATAGCAGCAGTAG
CCCTGTAGCAGCCGCGTCGGTGGCGTCGGTGACGTATTTTGATGCCGCCT
GGGAGAACGCTTGGCCCACCACTACAGCCACCAATAGAACCACTGTCACG
GCCACTGCCTTCCCCAGTTTCTCCGCTATGCAAAAAGATGATCCCTTTAG
TGTTATCGACAAAAGCAGCCGCAGGAGCAGCTGTAGTATCCACTGTGGAA
AGAGCATCAGTGGTGATGGAGTCAACACTTCTCCCCTCCTCGCCCCTCCA
CCCAAGGACGTGGCCCGTCGGAGCTTCCGTGGAAGCAGCACAAGCAACAG
CAGCAGCAACGACAGGCCACTGTCAACAACTCTCGAAGAAGTGTCATTCC
TCCAAACACTCTCCCCTCCCATCGTCCGGGAGCCTCCTTCCGTTATCAAG
AAATTTACATTCCATTCTTCTGTCCCCGTATCGTCTCCTCCCTCCCATCT
TTCTCCTCCTGCCCCCCCCTTCCACCATCACCTCCACTTCGCCCCATCAG
CGGAGGCGATAGTGAAAGCTGCCTTCTACTCGGAGAGGAGAATGAAGACG
AGGACGAGGAGAAGGATGGAAACGTTGAAGGGGAGGGAGGAAGGGAGGGA
GGGCAGAGGACTGGACTGGCATTCGACATGCTGGAACTCTCCTCGGTCCT
TTCCTTGTCAAGATCAGGCAAGCAGCAGCAGCAGCAGCAGCAGCAACAGC
AACCACCACGATCTCCCGCCAGCGACACGCTAA
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Coding sequence (CDS) from alignment at chr8:1055831..1057713-

>NO08G03750.1 ID=NO08G03750.1|Name=NO08G03750.1|organism=Nannochloropsis oceanica|type=CDS|length=1740bp|location=Sequence derived from alignment at chr8:1055831..1057713- (Nannochloropsis oceanica)
ATGCAGCTCTACACGCTCCTAGCCGCGGCCAAGGGCGGCGGGGACTGGGA
GATTGTGGCAGAAGGAGGCGCTGCGGATTTGACAGGGAACTACCAACGTA
TTGCCCGACGTCTCGTGGCGGCCGCTCCCAAACGATTGCCTGGCATCCAA
ATCGAAGCCGGGATTGAAAAATGTAACGAGAAAGGAGGAGGAGGAGGAGG
AGGAGGAGAAGGAGGAAAGGAAGAAGTAAAAGGAGCTGGGAGTGATGTGA
AGGGAAGACCTCCGTCAATGTCAGGGATTCTCCGGCGGAGCTATGTTGCG
GAGGGTCACAACTTTGATTACATTGTGTTTCAAGCGCCTCTGCAGACGTC
TTCGCCCCCTAAGCAGCAAAAGGCGACATCCAGGGTCTGCTCTCCCTCTT
CCTCCTACTCCCCCTCATTCGTGCCCTCGTCCATCGCGCTGCTTTCTCTG
TGCGTGTCGGACCAGGATTCCTCTACCCAGGAAAGCTTCACCTTTCTCGA
AACGATCAAAAAGAGCGTGGTGGCTGCCATCCAGTGCAGCACCAGCACCA
ACAGCTGTAATGGTAGCAGCAACAGCAACAGCTCTCCTTCCTCCCTTACC
TCTGACTTTTCCCGAGCGCAAGATGAAACATTTATTTCCTCCTTCCTCCC
TATTCTCCGGGTCTCCTTCTACGCGGCCGTGACGGAGCAAAATGCAAAGT
CAGATGCCCCTCTCTCCTTCCCTTGCCCCTCCTTGGCCCTTTCCCCCTCC
TCCCCCTTACTCTTGTATTGCCCAAAGCCACGGGCTCAGGCCGTGATGTC
ACCCCCTGAATCCCCTCGCCCCTCTTCCTGGTCCCTTTCCACTTCTGCAT
CCATCGCAACGGCTGCTGACGCCACAGCTGCTTCCTCCTCTTCCCGTCCC
TTCTCTTGGAGCCATGCCCTGACAAGTAGGAGAGTCATCAGTACCAGCAG
TACTAGCAGCACCAGCAGCACCAGCACCAGGATCAGGTGCAGCAATAGCA
GCAGTAGCCCTGTAGCAGCCGCGTCGGTGGCGTCGGTGACGTATTTTGAT
GCCGCCTGGGAGAACGCTTGGCCCACCACTACAGCCACCAATAGAACCAC
TGTCACGGCCACTGCCTTCCCCAGTTTCTCCGCTATGCAAAAAGATGATC
CCTTTAGTGTTATCGACAAAAGCAGCCGCAGGAGCAGCTGTAGTATCCAC
TGTGGAAAGAGCATCAGTGGTGATGGAGTCAACACTTCTCCCCTCCTCGC
CCCTCCACCCAAGGACGTGGCCCGTCGGAGCTTCCGTGGAAGCAGCACAA
GCAACAGCAGCAGCAACGACAGGCCACTGTCAACAACTCTCGAAGAAGTG
TCATTCCTCCAAACACTCTCCCCTCCCATCGTCCGGGAGCCTCCTTCCGT
TATCAAGAAATTTACATTCCATTCTTCTGTCCCCGTATCGTCTCCTCCCT
CCCATCTTTCTCCTCCTGCCCCCCCCTTCCACCATCACCTCCACTTCGCC
CCATCAGCGGAGGCGATAGTGAAAGCTGCCTTCTACTCGGAGAGGAGAAT
GAAGACGAGGACGAGGAGAAGGATGGAAACGTTGAAGGGGAGGGAGGAAG
GGAGGGAGGGCAGAGGACTGGACTGGCATTCGACATGCTGGAACTCTCCT
CGGTCCTTTCCTTGTCAAGATCAGGCAAGCAGCAGCAGCAGCAGCAGCAG
CAACAGCAACCACCACGATCTCCCGCCAGCGACACGCTAA
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Synonyms
Publications