NO08G03720, NO08G03720 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO08G03720 vs. NCBI_GenBank
Match: XP_005854001.1 (ribose 5-phosphate isomerase A [Nannochloropsis gaditana CCMP526] >EKU22356.1 ribose 5-phosphate isomerase A [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 504.2 bits (1297), Expect = 2.600e-139 Identity = 260/282 (92.20%), Postives = 270/282 (95.74%), Query Frame = 0 Query: 1 MSRQKTLFSVMAMVTVGASAFILPVRQPLHGPALCTRRASTTTARFAVSQDELKKQVGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGQKLKAGELKDIVAIPTSIRTKEQAEGLGIPLVTLDTHSVLDVAIDGADEVDPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILGLPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTAPIADVMAVAGALEKVVGVVEHGFFLDMTTAVIVAGKTGIDVINKK 283 M+RQK +FSVMAMVTVGASAFILP++QPL+GPALC +RAS +TARFAVSQDELKKQVGYKSVDDYV SGMVVGLGTGSTAAFAVERLG KLKAGELKDIVAIPTSIRTKEQAE LG+PLVTLD+HSVLDVAIDGADEVDPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTIL LPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYT PIADV AVA ALE VVGVVEHGFFLDMTTAVIVAGK GI+VINKK Sbjct: 1 MARQKNIFSVMAMVTVGASAFILPLKQPLNGPALCVQRAS-STARFAVSQDELKKQVGYKSVDDYVQSGMVVGLGTGSTAAFAVERLGMKLKAGELKDIVAIPTSIRTKEQAESLGVPLVTLDSHSVLDVAIDGADEVDPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINKK 281
BLAST of NO08G03720 vs. NCBI_GenBank
Match: EWM26792.1 (ribose-5-phosphate isomerase [Nannochloropsis gaditana]) HSP 1 Score: 402.5 bits (1033), Expect = 1.100e-108 Identity = 218/282 (77.30%), Postives = 226/282 (80.14%), Query Frame = 0 Query: 1 MSRQKTLFSVMAMVTVGASAFILPVRQPLHGPALCTRRASTTTARFAVSQDELKKQVGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGQKLKAGELKDIVAIPTSIRTKEQAEGLGIPLVTLDTHSVLDVAIDGADEVDPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILGLPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTAPIADVMAVAGALEKVVGVVEHGFFLDMTTAVIVAGKTGIDVINKK 283 M+RQK +FSVMAMVTVGASAFILP++QPL+GPALC +RAS +TARFAVSQDELKKQVGYKSVDDYV SGMVVGLGTGSTAAFAVERLG KLKA DPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTIL LPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYT PIADV AVA ALE VVGVVEHGFFLDMTTAVIVAGK GI+VINKK Sbjct: 1 MARQKNIFSVMAMVTVGASAFILPLKQPLNGPALCVQRAS-STARFAVSQDELKKQVGYKSVDDYVQSGMVVGLGTGSTAAFAVERLGMKLKA---------------------------------------------DPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINKK 236
BLAST of NO08G03720 vs. NCBI_GenBank
Match: CBN78515.1 (Ribose-5-phosphate isomerase [Ectocarpus siliculosus]) HSP 1 Score: 355.1 bits (910), Expect = 2.000e-94 Identity = 184/233 (78.97%), Postives = 196/233 (84.12%), Query Frame = 0 Query: 49 SQDELKKQVGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGQKLKAGELKDIVAIPTSIRTKEQAEGLGIPLVTLDTHSVLDVAIDGADEVDPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILGLPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTAPIADVMAVAGALEKVVGVVEHGFFLDMTTAVIVAGKTGIDVINK 282 SQDELKKQVGYKSVDDYVTSGMVVGLGTGSTAAFAVERLG+ LK+GELKDIVAIPTSIRTKEQAE L IPLVTLDTHSVLDVAIDGADEVDP LNLVKGRGGALLREKMVEVCAKKFIVIVDDSK VPGLG++GAMPVE+TPFC EHT T+ LP +KG KLR + KPYVTDNDNYIVDLY+T PI D + + VGVVEHG FLDM+ AVI AG GI V K Sbjct: 3 SQDELKKQVGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGELLKSGELKDIVAIPTSIRTKEQAESLDIPLVTLDTHSVLDVAIDGADEVDPDLNLVKGRGGALLREKMVEVCAKKFIVIVDDSKFVPGLGISGAMPVEVTPFCWEHTLNTVKNLPSIKG-CDAKLREEDGKPYVTDNDNYIVDLYFTDPIKDANQAGKEMLETVGVVEHGLFLDMSFAVISAGTDGITVKTK 234
BLAST of NO08G03720 vs. NCBI_GenBank
Match: XP_002287305.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED94748.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 328.2 bits (840), Expect = 2.600e-86 Identity = 179/269 (66.54%), Postives = 202/269 (75.09%), Query Frame = 0 Query: 18 ASAFILPVRQPLHGPALCTRRASTTTA-RFAVSQDELKKQVGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGQKLKAGELKDIVAIPTSIRTKEQAEGLGIPLVTLDTHSVLDVAIDGADEVDPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILGLPGVKG-------AATGKLRMDGDKPYVTDNDNYIVDLYYTAPIADVMAVAGALEKVVGVVEHGFFLDMTTAVIVAGKTGIDV 279 A+AF Q + A T+R+ +T+ R A+SQDELKK VGYKSVDDYV SGMVVGLGTGSTA FAVERLG+KLK+GELKDIVAIPTS+RTKEQAE LGIPLVTLDTHS LDVAIDGADEVDP LNLVKG GGALLREKMVEVCA KFIVIVD+SK+ GLG +PVEITPFCH HT TI LP G ++ + DGD+ VTDN NYIVDL++T PI D +A L+ VGVV+HG F MTTAVI+AG GI V Sbjct: 5 AAAFAAVATQNVAAFAPMTQRSRVSTSIRMALSQDELKKMVGYKSVDDYVKSGMVVGLGTGSTAYFAVERLGEKLKSGELKDIVAIPTSVRTKEQAEELGIPLVTLDTHSKLDVAIDGADEVDPDLNLVKGGGGALLREKMVEVCADKFIVIVDESKLCDGLGPGFPLPVEITPFCHIHTLNTIAALPSCAGCKAVLRMGSSSTNKPDGDEIAVTDNGNYIVDLHFTEPIKDAPTMAKELKNTVGVVDHGLFCGMTTAVIIAGSDGISV 273
BLAST of NO08G03720 vs. NCBI_GenBank
Match: EJK49799.1 (hypothetical protein THAOC_31290 [Thalassiosira oceanica]) HSP 1 Score: 326.6 bits (836), Expect = 7.400e-86 Identity = 176/256 (68.75%), Postives = 194/256 (75.78%), Query Frame = 0 Query: 28 PLHGPALCTRRASTTTARFAVSQDELKKQVGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGQKLKAGELKDIVAIPTSIRTKEQAEGLGIPLVTLDTHSVLDVAIDGADEVDPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILGLPGVKG-------AATGKLRMDGDKPYVTDNDNYIVDLYYTAPIADVMAVAGALEKVVGVVEHGFFLDMTTAVIVAGKTGI 277 P G + +S A A+SQDELKK VGYKSVDDYV SGMVVGLGTGSTA FAVERLGQKLK GELKDIVAIPTS+RTKEQAE LGIPLVTLDTHS LDVAIDGADEVDP LNLVKG GGALLREKMVEVCA KFIVIVD+SK+ GLG +PVEITPFCHEHT RTI LP +G ++ + DGD+ VTDN NYIVDL++ I D A+A L+ VGVV+HG F DMTTAVI+AG GI Sbjct: 22 PAAGVSRSRSISSLRMAETALSQDELKKMVGYKSVDDYVESGMVVGLGTGSTAYFAVERLGQKLKDGELKDIVAIPTSVRTKEQAESLGIPLVTLDTHSKLDVAIDGADEVDPDLNLVKGGGGALLREKMVEVCADKFIVIVDESKLCDGLGPGFPLPVEITPFCHEHTLRTIASLPTCEGCDAVLRMGSSSTNKPDGDEIAVTDNGNYIVDLHFKEAIKDAPAMASELKNTVGVVDHGLFCDMTTAVIIAGSDGI 277
BLAST of NO08G03720 vs. NCBI_GenBank
Match: OLP85194.1 (putative ribose-5-phosphate isomerase 3, chloroplastic [Symbiodinium microadriaticum]) HSP 1 Score: 322.8 bits (826), Expect = 1.100e-84 Identity = 167/241 (69.29%), Postives = 190/241 (78.84%), Query Frame = 0 Query: 45 RFAVSQDELKKQVGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGQKLKAGELKDIVAIPTSIRTKEQAEGLGIPLVTLDTHSVLDVAIDGADEVDPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILGLPGVKGAA-------TGKLRMDGDKPYVTDNDNYIVDLYYTAPIADVMAVAGALEKVVGVVEHGFFLDMTTAVIVAGKTGIDV 279 R A+SQDELKK VGYK+VDDYV SG V+GLGTGSTAAFAVER+G+KLK+GELKDI+AIPTSIRT+EQAE LGIPL TLDTHS LDVAIDGADEVDPALNLVKG GGAL REK+VE+CAKKFIVIVD+SK+ GLG +PVEI PFCHEHT R I LP +KG + DGD+P VTDN NYIVDL +T+PI+D +A L+ VGVV+HG F MTTA I+AGK GI V Sbjct: 340 RKALSQDELKKMVGYKAVDDYVQSGTVIGLGTGSTAAFAVERVGEKLKSGELKDIIAIPTSIRTQEQAESLGIPLATLDTHSDLDVAIDGADEVDPALNLVKGGGGALFREKIVEMCAKKFIVIVDESKLCDGLGPGFPVPVEIVPFCHEHTMRKIASLPALKGCEPVLRLGDVANNQPDGDEPAVTDNGNYIVDLKFTSPISDPVAAGEQLKATVGVVDHGLFTSMTTACIIAGKEGIIV 580
BLAST of NO08G03720 vs. NCBI_GenBank
Match: ABA55587.1 (chloroplast ribulose phosphate isomerase, partial [Pavlova lutheri]) HSP 1 Score: 320.5 bits (820), Expect = 5.300e-84 Identity = 172/253 (67.98%), Postives = 194/253 (76.68%), Query Frame = 0 Query: 37 RRASTTTARFAV--SQDELKKQVGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGQKLKAGELKDIVAIPTSIRTKEQAEGLGIPLVTLDTHSVLDVAIDGADEVDPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILGLPGVKG---------AATGKLRMDGDKPYVTDNDNYIVDLYYTAPIADVMAVAGALEKVVGVVEHGFFLDMTTAVIVAGKTGIDV 279 R A T A+ V +QDELKK GYK+VDDYV SGMVVGLGTGSTAAFAVER+G KLK+GELKDI+AIPTS+RTKEQAE LGIPLVTL THS LDVAIDGAD VDP LNL+KG GGALLREKMVEVCAKKFIVIVDD+K+ GLG + +PVEITPFC EHT R + P G AATG ++DG P VTDNDNYIVDL++ PIAD +A+A L+ VGVV+HG F MTTA I+AGK GI V Sbjct: 23 RSALRTPAQQVVMATQDELKKLAGYKAVDDYVRSGMVVGLGTGSTAAFAVERVGMKLKSGELKDIIAIPTSVRTKEQAEALGIPLVTLGTHSDLDVAIDGADAVDPRLNLIKGGGGALLREKMVEVCAKKFIVIVDDTKLCAGLGPSFPLPVEITPFCWEHTLRKVAACPAAAGCEAKLRLGSAATGS-KVDGTDPAVTDNDNYIVDLFFKQPIADPVALAAQLKATVGVVDHGLFCGMTTACIIAGKDGISV 274
BLAST of NO08G03720 vs. NCBI_GenBank
Match: AAW79354.1 (chloroplast ribose-5-phosphate isomerase [Heterocapsa triquetra]) HSP 1 Score: 319.7 bits (818), Expect = 9.100e-84 Identity = 175/275 (63.64%), Postives = 193/275 (70.18%), Query Frame = 0 Query: 12 AMVTVGASAFILP-VRQPLHGPALCTRRASTTTARFAVSQDELKKQVGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGQKLKAGELKDIVAIPTSIRTKEQAEGLGIPLVTLDTHSVLDVAIDGADEVDPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILGLPGVKGAA-------TGKLRMDGDKPYVTDNDNYIVDLYYTAPIADVMAVAGALEKVVGVVEHGFFLDMTTAVIVAGKTGIDV 279 A GAS P VR + G A T A +QDELKKQVGYK+VDDYV SG V+GLGTGSTAAFAVER+GQ LK+GELKDI+AIPTSIRTKEQAE LGIPL TLDTHS LDVAIDGADEVDP LNLVKG GGAL REK+VE+CAKKFIVIVD+SKM GLG +PVEI PFCHEHT R I LP + G + DGDKP VTDN NYIVDL + PI D +A L+ VGVV+HG F MTTA I+AG GI V Sbjct: 46 AAPAAGASQGFAPGVRCSILGVAAVTVAAGARRVARRATQDELKKQVGYKAVDDYVKSGTVIGLGTGSTAAFAVERVGQLLKSGELKDIIAIPTSIRTKEQAESLGIPLATLDTHSDLDVAIDGADEVDPNLNLVKGGGGALFREKIVEMCAKKFIVIVDESKMCGGLGPGFPIPVEIVPFCHEHTMREIAKLPALAGCKPVLRLGDVANNKPDGDKPAVTDNSNYIVDLVFETPIKDAVAAGEQLKNTVGVVDHGLFTGMTTACIIAGSDGISV 320
BLAST of NO08G03720 vs. NCBI_GenBank
Match: GAX12595.1 (ribose 5-phosphate isomerase A [Fistulifera solaris]) HSP 1 Score: 319.3 bits (817), Expect = 1.200e-83 Identity = 168/253 (66.40%), Postives = 191/253 (75.49%), Query Frame = 0 Query: 38 RASTTTARFAVSQDELKKQVGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGQKLKAGELKDIVAIPTSIRTKEQAEGLGIPLVTLDTHSVLDVAIDGADEVDPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILGLPGVKGAATGKLRM--------DGDKPYVTDNDNYIVDLYYTAPIADVMAVAGALEKVVGVVEHGFFLDMTTAVIVAGKTGIDVINKK 283 R + +T A SQ+ELKK VGYK+VDDYV SGMVVGLGTGSTA +AVER+G+KLK+GELKDI+AIPTS+RTKEQAE LGIPLVTLDTHS LDVAIDGADEVDP LNL KG GGAL REK+VEVCA KFIVIVD+SK+ GLG +PVEI PFCHEHT R I LP KG LR+ DGD+P VTDN NYIVDL++ PI D M + ++ VVGVVEHG F M+TAVI+AG GI V K Sbjct: 24 RPTFSTRIMATSQEELKKLVGYKAVDDYVKSGMVVGLGTGSTAYYAVERVGEKLKSGELKDILAIPTSVRTKEQAESLGIPLVTLDTHSKLDVAIDGADEVDPELNLTKGGGGALFREKIVEVCADKFIVIVDESKLCDGLGPGFPIPVEIVPFCHEHTMRMIGDLPSCKGKCKPVLRLGSAANNKADGDEPAVTDNGNYIVDLHFEEPIKDPMTMGKEIKNVVGVVEHGLFCGMSTAVIIAGSDGISVKEAK 276
BLAST of NO08G03720 vs. NCBI_GenBank
Match: GAX27838.1 (ribose 5-phosphate isomerase A [Fistulifera solaris]) HSP 1 Score: 318.9 bits (816), Expect = 1.600e-83 Identity = 168/253 (66.40%), Postives = 190/253 (75.10%), Query Frame = 0 Query: 38 RASTTTARFAVSQDELKKQVGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGQKLKAGELKDIVAIPTSIRTKEQAEGLGIPLVTLDTHSVLDVAIDGADEVDPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILGLPGVKGAATGKLRM--------DGDKPYVTDNDNYIVDLYYTAPIADVMAVAGALEKVVGVVEHGFFLDMTTAVIVAGKTGIDVINKK 283 R + +T A SQDELKK VGYK+VDDYV SGMVVGLGTGSTA +AVER+G+KLK+GELKDI+AIPTS+RTKEQAE LGIPLVTLDTHS LDVAIDGADEVDP LNL KG GGAL REK+VEVCA KFIVIVD+SK+ GLG +PVEI PFCHEHT R I LP KG LR+ DGD+P VTDN NYIVDL++ PI D + ++ VVGVVEHG F M+TAVI+AG GI V K Sbjct: 24 RPTFSTRIMATSQDELKKLVGYKAVDDYVKSGMVVGLGTGSTAYYAVERVGEKLKSGELKDILAIPTSVRTKEQAESLGIPLVTLDTHSKLDVAIDGADEVDPELNLTKGGGGALFREKIVEVCADKFIVIVDESKLCDGLGPGFPIPVEIVPFCHEHTMRMIGNLPSCKGKCKPVLRLGSAANNKVDGDEPAVTDNGNYIVDLHFEEPIKDPTTMGKEIKNVVGVVEHGLFCGMSTAVIIAGSDGISVKEAK 276 The following BLAST results are available for this feature:
BLAST of NO08G03720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO08G03720 ID=NO08G03720|Name=NO08G03720|organism=Nannochloropsis oceanica|type=gene|length=1836bpback to top protein sequence of NO08G03720.1 >NO08G03720.1-protein ID=NO08G03720.1-protein|Name=NO08G03720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=283bpback to top Synonyms
Publications
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