NO08G03560, NO08G03560 (gene) Nannochloropsis oceanica

Overview
NameNO08G03560
Unique NameNO08G03560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2195
Alignment locationchr8:992728..994922 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:992728..994922 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0035091phosphatidylinositol binding
GO:0035091phosphatidylinositol binding
Vocabulary: INTERPRO
TermDefinition
IPR036871PX_dom_sf
IPR001683Phox
Homology
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BLAST of NO08G03560 vs. NCBI_GenBank
Match: KZT06913.1 (syntaxin [Laetiporus sulphureus 93-53])

HSP 1 Score: 64.7 bits (156), Expect = 6.700e-7
Identity = 41/101 (40.59%), Postives = 60/101 (59.41%), Query Frame = 0 
Query:  116 HVIYDILVKPAGRFDAWTIHRRYSNFLMLQTSLPPSLAALAP-PLPPKRWWPVLLPSHRTALLEERREGLERCLQLCVS--NEQLRLSSPFRDFVGLGLGR 214
            HV+Y I ++ + R  +W + RRYS F+ L   L  S+ A  P  LPPKR + +        LLEERREGLE  L+  +S  +++ R S  FRDF+G+ +G+
Sbjct:   21 HVVYRIEIQASVR--SWQMWRRYSEFVDLHIELAKSIGAPPPAELPPKRAFSIFKGLRDPHLLEERREGLELYLRAILSARDDRWRESFAFRDFLGIPVGK 119
The following BLAST results are available for this feature:
BLAST of NO08G03560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
KZT06913.16.700e-740.59syntaxin [Laetiporus sulphureus 93-53][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03560.1NO08G03560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03560.1NO08G03560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03560 ID=NO08G03560|Name=NO08G03560|organism=Nannochloropsis oceanica|type=gene|length=2195bp
CGGGGGTCAAAATTTGCATCGCGAATGCGATGCCGCCCCTTTACACTACT
TACAGCGTAAATCAGTTCATCAAATATTACGCTCCTGTTTAGACAGATGC
TGGATGCATGGTTTGACCAGGACGAATCGGGGCAACCTTCTCACGTGGTG
CAGCTGACGTCCCAGCGAGTTGAGCGACGTTGCCTCGCAGGAAGGAACGC
GGTAGTTTTCCCTTCCGATTCACGGCGGGGCCCTTTTTGCGCGCACTAAC
TCAAATATTTCCTCGTTCTATGTACACATGTTGGTTGCTGACACTCTCAC
CCTCTGTCCGCGCACCATTCAATCCATAAGAGCGGGGTAGCAGTGAGAGC
TGACTCCGCTGAACAGCCCCGTTGTTCAACACGCCTGCGCAAGTAGAAGG
ATCTCATTTTAACCCATGCCGTCTTTATCGTCCATCAGgtaagcaatcat
agaattcgcataaggtcacgtgaataacaagcacctttagcgggtggggg
gaccagatcgaacaccagcagccagcaaggatgctcaccttgcctccctc
cccatgaaccaacaaacagCGTTATCGAAGAACGACCACCTGCCCTGCCA
CAAGTCCACGATCCACCCCAACGACACCTGATCTTGACTCACTCCCCTAT
TTCAACGGAAGTGAGGCATGTGCCCGAAGGAAATGACACAACTAATACGG
GAGAAGCAGGAGTAGATATTTCGAAGGGGGGTGAGGAGgtaagcaagaaa
gtccctttatagatgtttagtatgacaggaaggaaattagggatagcaag
caagtggaaacgagaaagttcgcgttcacgagctatttgccagtatttga
tggcctattttcttgcttgaatcgagctgagctcgacatgaagacggagg
ggacggaaaatgcagggacggatgccggcgcccccttagcgtcaaccatc
caaaccctctcttgtacacaccctttgagcgtccgtggtgagacgacggc
cttattggtattgatctctgcaaagacggctgctctataatcgatacaat
cactgctaatgcatcattactattggtctccaaatgtgccatcgtgactg
acccctcctctcattccacttcaaccaccaacagGCCATGCCCCCCCTCC
TCACGCCTCAACCCTTCCTCTCCAAGCGCCCCCGCCATCGCATCCGCAAT
TTGGCATCATTTACGGACGTTGCTTCTATCTACATTCCTTCTTTTCGATT
CATATCGAGCCAAGGCAGTGGCAGCAGTGGTGGTGGTCATGTTATATATG
ATATCCTCGTCAAACCCGCCGGGCGTTTCGATGCCTGGACCATCCACAGg
tacatcctcattccttccttccctccctctcgtccgctgttggtggtgac
tccctataactgcctatcgaacatgggtcagtcgagaaacatcacacaac
tctctccctctcccccctttccctccctccctcttcccacccacccaccc
ttcccaagGCGCTACTCCAACTTCCTGATGCTACAAACGTCGCTTCCTCC
CTCCCTCGCTGCCTTGGCCCCCCCTTTGCCCCCCAAGCGGTGGTGGCCTG
TCCTCCTTCCCTCCCACCGCACCGCTTTGCTGGAGGAAAGGAGGGAGGGG
CTGGAGAGATGCTTGCAACTGTGCGTGTCAAACGAGCAGCTTCGTCTCTC
TTCCCCCTTTCGGGATTTTGTTGGGTTGGGTCTAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGGAGGGAAGGTGCCTCAGCTTGGGGGAG
GGGGGTGATTGGTTCTTGAGGAAGGATATTTGGGTGGAGCCGGAGGAAGG
GAGGCAGGAATCAGAGAGGGAGAGGAAGGGGTTGGTTTCCTTTCCTTATA
TGATGCAAATCTCGGCGAGCGGAAAAGGTGGAGGAGGGCGGGGAGGAAGA
GGTGGGGGAAGGGCGGATTGGGGTGAGGGAGGAGAAGGGGAGGGTGGACG
GGGGAGGGTATTGGGGAGAGGAGGAAGAGGAGGGAGGGAAGAGGTGTGGA
AAAATGTAAAGGTGGTGCGAACACCGCCGCGTGTGAGGAGGGAGGAGGAG
GGAGCGAGGAAGGGAGGGGAGATGGTGGTGCATCGACAAAGTCTTCTGGG
CCACTCGTCTTGTGCGGTGTCCTAGGGAGGGAGGGAGGGAGGGAG
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protein sequence of NO08G03560.1

>NO08G03560.1-protein ID=NO08G03560.1-protein|Name=NO08G03560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MPSLSSISVIEERPPALPQVHDPPQRHLILTHSPISTEVRHVPEGNDTTN
TGEAGVDISKGGEEAMPPLLTPQPFLSKRPRHRIRNLASFTDVASIYIPS
FRFISSQGSGSSGGGHVIYDILVKPAGRFDAWTIHRRYSNFLMLQTSLPP
SLAALAPPLPPKRWWPVLLPSHRTALLEERREGLERCLQLCVSNEQLRLS
SPFRDFVGLGLGREGGREGGREGGEGRCLSLGEGGDWFLRKDIWVEPEEG
RQESERERKGLVSFPYMMQISASGKGGGGRGGRGGGRADWGEGGEGEGGR
GRVLGRGGRGGREEVWKNVKVVRTPPRVRREEEGARKGGEMVVHRQSLLG
HSSCAVS*
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Synonyms
Publications