|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr8 | genome | chr8:992728..994922 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G03560.1 vs.
Match: GAW06122.1 (syntaxin [Lentinula edodes]) HSP 1 Score: 64.7 bits (156), Expect = 6.700e-7 Identity = 39/108 (36.11%), Postives = 61/108 (56.48%), Query Frame = 0
Query: 116 HVIYDILVKPAGRFDAWTIHRRYSNFLMLQTSLPPSLAALAP-PLPPKRWWPVLLPSHRTALLEERREGLERCLQLCV--SNEQLRLSSPFRDFVGLGLGREGGREGG 221
H +Y I ++ G +W+I RRYS F L L + P PLPPK + +L + +LLEER+ GLE L+ + ++ R + F++F+G+ +GR+GG GG
Sbjct: 190 HTVYQIDIR--GNVRSWSIWRRYSEFDDLHVELVKGTGSPPPVPLPPKHKYSILRSHNNPSLLEERKTGLEAYLRAIIGAKEDKWREAFVFKEFLGIPVGRQGGVVGG 295
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G03560.1 ID=NO08G03560.1|Name=NO08G03560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1509bp
CGGGGGTCAAAATTTGCATCGCGAATGCGATGCCGCCCCTTTACACTACT
TACAGCGTAAATCAGTTCATCAAATATTACGCTCCTGTTTAGACAGATGC
TGGATGCATGGTTTGACCAGGACGAATCGGGGCAACCTTCTCACGTGGTG
CAGCTGACGTCCCAGCGAGTTGAGCGACGTTGCCTCGCAGGAAGGAACGC
GGTAGTTTTCCCTTCCGATTCACGGCGGGGCCCTTTTTGCGCGCACTAAC
TCAAATATTTCCTCGTTCTATGTACACATGTTGGTTGCTGACACTCTCAC
CCTCTGTCCGCGCACCATTCAATCCATAAGAGCGGGGTAGCAGTGAGAGC
TGACTCCGCTGAACAGCCCCGTTGTTCAACACGCCTGCGCAAGTAGAAGG
ATCTCATTTTAACCCATGCCGTCTTTATCGTCCATCAGCGTTATCGAAGA
ACGACCACCTGCCCTGCCACAAGTCCACGATCCACCCCAACGACACCTGA
TCTTGACTCACTCCCCTATTTCAACGGAAGTGAGGCATGTGCCCGAAGGA
AATGACACAACTAATACGGGAGAAGCAGGAGTAGATATTTCGAAGGGGGG
TGAGGAGGCCATGCCCCCCCTCCTCACGCCTCAACCCTTCCTCTCCAAGC
GCCCCCGCCATCGCATCCGCAATTTGGCATCATTTACGGACGTTGCTTCT
ATCTACATTCCTTCTTTTCGATTCATATCGAGCCAAGGCAGTGGCAGCAG
TGGTGGTGGTCATGTTATATATGATATCCTCGTCAAACCCGCCGGGCGTT
TCGATGCCTGGACCATCCACAGGCGCTACTCCAACTTCCTGATGCTACAA
ACGTCGCTTCCTCCCTCCCTCGCTGCCTTGGCCCCCCCTTTGCCCCCCAA
GCGGTGGTGGCCTGTCCTCCTTCCCTCCCACCGCACCGCTTTGCTGGAGG
AAAGGAGGGAGGGGCTGGAGAGATGCTTGCAACTGTGCGTGTCAAACGAG
CAGCTTCGTCTCTCTTCCCCCTTTCGGGATTTTGTTGGGTTGGGTCTAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGAGGGAAGGTGCC
TCAGCTTGGGGGAGGGGGGTGATTGGTTCTTGAGGAAGGATATTTGGGTG
GAGCCGGAGGAAGGGAGGCAGGAATCAGAGAGGGAGAGGAAGGGGTTGGT
TTCCTTTCCTTATATGATGCAAATCTCGGCGAGCGGAAAAGGTGGAGGAG
GGCGGGGAGGAAGAGGTGGGGGAAGGGCGGATTGGGGTGAGGGAGGAGAA
GGGGAGGGTGGACGGGGGAGGGTATTGGGGAGAGGAGGAAGAGGAGGGAG
GGAAGAGGTGTGGAAAAATGTAAAGGTGGTGCGAACACCGCCGCGTGTGA
GGAGGGAGGAGGAGGGAGCGAGGAAGGGAGGGGAGATGGTGGTGCATCGA
CAAAGTCTTCTGGGCCACTCGTCTTGTGCGGTGTCCTAGGGAGGGAGGGA
GGGAGGGAG back to topprotein sequence of NO08G03560.1 >NO08G03560.1-protein ID=NO08G03560.1-protein|Name=NO08G03560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MPSLSSISVIEERPPALPQVHDPPQRHLILTHSPISTEVRHVPEGNDTTN
TGEAGVDISKGGEEAMPPLLTPQPFLSKRPRHRIRNLASFTDVASIYIPS
FRFISSQGSGSSGGGHVIYDILVKPAGRFDAWTIHRRYSNFLMLQTSLPP
SLAALAPPLPPKRWWPVLLPSHRTALLEERREGLERCLQLCVSNEQLRLS
SPFRDFVGLGLGREGGREGGREGGEGRCLSLGEGGDWFLRKDIWVEPEEG
RQESERERKGLVSFPYMMQISASGKGGGGRGGRGGGRADWGEGGEGEGGR
GRVLGRGGRGGREEVWKNVKVVRTPPRVRREEEGARKGGEMVVHRQSLLG
HSSCAVS* back to topmRNA from alignment at chr8:992728..994922- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G03560.1 ID=NO08G03560.1|Name=NO08G03560.1|organism=Nannochloropsis oceanica|type=mRNA|length=2195bp|location=Sequence derived from alignment at chr8:992728..994922- (Nannochloropsis oceanica)
CGGGGGTCAAAATTTGCATCGCGAATGCGATGCCGCCCCTTTACACTACT
TACAGCGTAAATCAGTTCATCAAATATTACGCTCCTGTTTAGACAGATGC
TGGATGCATGGTTTGACCAGGACGAATCGGGGCAACCTTCTCACGTGGTG
CAGCTGACGTCCCAGCGAGTTGAGCGACGTTGCCTCGCAGGAAGGAACGC
GGTAGTTTTCCCTTCCGATTCACGGCGGGGCCCTTTTTGCGCGCACTAAC
TCAAATATTTCCTCGTTCTATGTACACATGTTGGTTGCTGACACTCTCAC
CCTCTGTCCGCGCACCATTCAATCCATAAGAGCGGGGTAGCAGTGAGAGC
TGACTCCGCTGAACAGCCCCGTTGTTCAACACGCCTGCGCAAGTAGAAGG
ATCTCATTTTAACCCATGCCGTCTTTATCGTCCATCAGGTAAGCAATCAT
AGAATTCGCATAAGGTCACGTGAATAACAAGCACCTTTAGCGGGTGGGGG
GACCAGATCGAACACCAGCAGCCAGCAAGGATGCTCACCTTGCCTCCCTC
CCCATGAACCAACAAACAGCGTTATCGAAGAACGACCACCTGCCCTGCCA
CAAGTCCACGATCCACCCCAACGACACCTGATCTTGACTCACTCCCCTAT
TTCAACGGAAGTGAGGCATGTGCCCGAAGGAAATGACACAACTAATACGG
GAGAAGCAGGAGTAGATATTTCGAAGGGGGGTGAGGAGGTAAGCAAGAAA
GTCCCTTTATAGATGTTTAGTATGACAGGAAGGAAATTAGGGATAGCAAG
CAAGTGGAAACGAGAAAGTTCGCGTTCACGAGCTATTTGCCAGTATTTGA
TGGCCTATTTTCTTGCTTGAATCGAGCTGAGCTCGACATGAAGACGGAGG
GGACGGAAAATGCAGGGACGGATGCCGGCGCCCCCTTAGCGTCAACCATC
CAAACCCTCTCTTGTACACACCCTTTGAGCGTCCGTGGTGAGACGACGGC
CTTATTGGTATTGATCTCTGCAAAGACGGCTGCTCTATAATCGATACAAT
CACTGCTAATGCATCATTACTATTGGTCTCCAAATGTGCCATCGTGACTG
ACCCCTCCTCTCATTCCACTTCAACCACCAACAGGCCATGCCCCCCCTCC
TCACGCCTCAACCCTTCCTCTCCAAGCGCCCCCGCCATCGCATCCGCAAT
TTGGCATCATTTACGGACGTTGCTTCTATCTACATTCCTTCTTTTCGATT
CATATCGAGCCAAGGCAGTGGCAGCAGTGGTGGTGGTCATGTTATATATG
ATATCCTCGTCAAACCCGCCGGGCGTTTCGATGCCTGGACCATCCACAGG
TACATCCTCATTCCTTCCTTCCCTCCCTCTCGTCCGCTGTTGGTGGTGAC
TCCCTATAACTGCCTATCGAACATGGGTCAGTCGAGAAACATCACACAAC
TCTCTCCCTCTCCCCCCTTTCCCTCCCTCCCTCTTCCCACCCACCCACCC
TTCCCAAGGCGCTACTCCAACTTCCTGATGCTACAAACGTCGCTTCCTCC
CTCCCTCGCTGCCTTGGCCCCCCCTTTGCCCCCCAAGCGGTGGTGGCCTG
TCCTCCTTCCCTCCCACCGCACCGCTTTGCTGGAGGAAAGGAGGGAGGGG
CTGGAGAGATGCTTGCAACTGTGCGTGTCAAACGAGCAGCTTCGTCTCTC
TTCCCCCTTTCGGGATTTTGTTGGGTTGGGTCTAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGGAGGGAAGGTGCCTCAGCTTGGGGGAG
GGGGGTGATTGGTTCTTGAGGAAGGATATTTGGGTGGAGCCGGAGGAAGG
GAGGCAGGAATCAGAGAGGGAGAGGAAGGGGTTGGTTTCCTTTCCTTATA
TGATGCAAATCTCGGCGAGCGGAAAAGGTGGAGGAGGGCGGGGAGGAAGA
GGTGGGGGAAGGGCGGATTGGGGTGAGGGAGGAGAAGGGGAGGGTGGACG
GGGGAGGGTATTGGGGAGAGGAGGAAGAGGAGGGAGGGAAGAGGTGTGGA
AAAATGTAAAGGTGGTGCGAACACCGCCGCGTGTGAGGAGGGAGGAGGAG
GGAGCGAGGAAGGGAGGGGAGATGGTGGTGCATCGACAAAGTCTTCTGGG
CCACTCGTCTTGTGCGGTGTCCTAGGGAGGGAGGGAGGGAGGGAG back to topCoding sequence (CDS) from alignment at chr8:992728..994922- >NO08G03560.1 ID=NO08G03560.1|Name=NO08G03560.1|organism=Nannochloropsis oceanica|type=CDS|length=1074bp|location=Sequence derived from alignment at chr8:992728..994922- (Nannochloropsis oceanica)
ATGCCGTCTTTATCGTCCATCAGCGTTATCGAAGAACGACCACCTGCCCT
GCCACAAGTCCACGATCCACCCCAACGACACCTGATCTTGACTCACTCCC
CTATTTCAACGGAAGTGAGGCATGTGCCCGAAGGAAATGACACAACTAAT
ACGGGAGAAGCAGGAGTAGATATTTCGAAGGGGGGTGAGGAGGCCATGCC
CCCCCTCCTCACGCCTCAACCCTTCCTCTCCAAGCGCCCCCGCCATCGCA
TCCGCAATTTGGCATCATTTACGGACGTTGCTTCTATCTACATTCCTTCT
TTTCGATTCATATCGAGCCAAGGCAGTGGCAGCAGTGGTGGTGGTCATGT
TATATATGATATCCTCGTCAAACCCGCCGGGCGTTTCGATGCCTGGACCA
TCCACAGGCGCTACTCCAACTTCCTGATGCTACAAACGTCGCTTCCTCCC
TCCCTCGCTGCCTTGGCCCCCCCTTTGCCCCCCAAGCGGTGGTGGCCTGT
CCTCCTTCCCTCCCACCGCACCGCTTTGCTGGAGGAAAGGAGGGAGGGGC
TGGAGAGATGCTTGCAACTGTGCGTGTCAAACGAGCAGCTTCGTCTCTCT
TCCCCCTTTCGGGATTTTGTTGGGTTGGGTCTAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGGAGGGAAGGTGCCTCAGCTTGGGGGAGG
GGGGTGATTGGTTCTTGAGGAAGGATATTTGGGTGGAGCCGGAGGAAGGG
AGGCAGGAATCAGAGAGGGAGAGGAAGGGGTTGGTTTCCTTTCCTTATAT
GATGCAAATCTCGGCGAGCGGAAAAGGTGGAGGAGGGCGGGGAGGAAGAG
GTGGGGGAAGGGCGGATTGGGGTGAGGGAGGAGAAGGGGAGGGTGGACGG
GGGAGGGTATTGGGGAGAGGAGGAAGAGGAGGGAGGGAAGAGGTGTGGAA
AAATGTAAAGGTGGTGCGAACACCGCCGCGTGTGAGGAGGGAGGAGGAGG
GAGCGAGGAAGGGAGGGGAGATGGTGGTGCATCGACAAAGTCTTCTGGGC
CACTCGTCTTGTGCGGTGTCCTAG back to top
|