NO08G03550, NO08G03550 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO08G03550 vs. NCBI_GenBank
Match: XP_005855621.1 (tbc1 domain family member 23-like protein, partial [Nannochloropsis gaditana CCMP526] >EKU20739.1 tbc1 domain family member 23-like protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 136.7 bits (343), Expect = 1.300e-28 Identity = 88/161 (54.66%), Postives = 99/161 (61.49%), Query Frame = 0 Query: 2 SLGLSSLIDHVPSQCRMCKHEALLRFQQASVSSPSSLLPSSPSPAP--TKIHGPRFGRPASFGGKVGVG---GVAGEPPSLAALTQLGQNSLGGFRTRATGLFGKLQAHAHAAQXXXXXXXXXXXXXXXXXXXXPQQLECVQEMAGTFLKGTVSGLTKRAE 158 SL L++LIDHVPSQCRMCKHEALLRF +AS SS L PS P+ A + GPRF RP SFGG G G +GE SLAAL+QLGQ+SL R+RATGLFGKLQA A PQQLE V +M G FLKGT+ L KRAE Sbjct: 257 SLTLAALIDHVPSQCRMCKHEALLRFHKASGSSSLPLSPSPPAKASPGSSSTGPRFSRPLSFGGHAGPAFGKGTSGETASLAALSQLGQSSLDVLRSRATGLFGKLQAQGQA----------HGGEEGKEGGGLPQQLETVHDM-GNFLKGTMVSLGKRAE 406
BLAST of NO08G03550 vs. NCBI_GenBank
Match: EWM26834.1 (tbc1 domain family member 23 [Nannochloropsis gaditana]) HSP 1 Score: 135.2 bits (339), Expect = 3.700e-28 Identity = 87/160 (54.37%), Postives = 98/160 (61.25%), Query Frame = 0 Query: 3 LGLSSLIDHVPSQCRMCKHEALLRFQQASVSSPSSLLPSSPSPAP--TKIHGPRFGRPASFGGKVGVG---GVAGEPPSLAALTQLGQNSLGGFRTRATGLFGKLQAHAHAAQXXXXXXXXXXXXXXXXXXXXPQQLECVQEMAGTFLKGTVSGLTKRAE 158 L L++LIDHVPSQCRMCKHEALLRF +AS SS L PS P+ A + GPRF RP SFGG G G +GE SLAAL+QLGQ+SL R+RATGLFGKLQA A PQQLE V +M G FLKGT+ L KRAE Sbjct: 752 LTLAALIDHVPSQCRMCKHEALLRFHKASGSSSLPLSPSPPAKASPGSSSTGPRFSRPLSFGGHAGPAFGKGTSGETASLAALSQLGQSSLDVLRSRATGLFGKLQAQGQA----------HGGEEGKEGGGLPQQLETVHDM-GNFLKGTMVSLGKRAE 900 The following BLAST results are available for this feature:
BLAST of NO08G03550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 2 Position : 0 Zoom : x 1
Relationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO08G03550 ID=NO08G03550|Name=NO08G03550|organism=Nannochloropsis oceanica|type=gene|length=990bpback to top protein sequence of NO08G03550.1 >NO08G03550.1-protein ID=NO08G03550.1-protein|Name=NO08G03550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=330bpback to top Synonyms
Publications
|