NO08G03550, NO08G03550 (gene) Nannochloropsis oceanica

Overview
NameNO08G03550
Unique NameNO08G03550
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length990
Alignment locationchr8:989874..990863 +

Link to JBrowse

Properties
Property NameValue
DescriptionTbc1 domain family member 23-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:989874..990863 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0042147retrograde transport, endosome to Golgi
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
Homology
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BLAST of NO08G03550 vs. NCBI_GenBank
Match: XP_005855621.1 (tbc1 domain family member 23-like protein, partial [Nannochloropsis gaditana CCMP526] >EKU20739.1 tbc1 domain family member 23-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 136.7 bits (343), Expect = 1.300e-28
Identity = 88/161 (54.66%), Postives = 99/161 (61.49%), Query Frame = 0 
Query:    2 SLGLSSLIDHVPSQCRMCKHEALLRFQQASVSSPSSLLPSSPSPAP--TKIHGPRFGRPASFGGKVGVG---GVAGEPPSLAALTQLGQNSLGGFRTRATGLFGKLQAHAHAAQXXXXXXXXXXXXXXXXXXXXPQQLECVQEMAGTFLKGTVSGLTKRAE 158
            SL L++LIDHVPSQCRMCKHEALLRF +AS SS   L PS P+ A   +   GPRF RP SFGG  G     G +GE  SLAAL+QLGQ+SL   R+RATGLFGKLQA   A                      PQQLE V +M G FLKGT+  L KRAE
Sbjct:  257 SLTLAALIDHVPSQCRMCKHEALLRFHKASGSSSLPLSPSPPAKASPGSSSTGPRFSRPLSFGGHAGPAFGKGTSGETASLAALSQLGQSSLDVLRSRATGLFGKLQAQGQA----------HGGEEGKEGGGLPQQLETVHDM-GNFLKGTMVSLGKRAE 406
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BLAST of NO08G03550 vs. NCBI_GenBank
Match: EWM26834.1 (tbc1 domain family member 23 [Nannochloropsis gaditana])

HSP 1 Score: 135.2 bits (339), Expect = 3.700e-28
Identity = 87/160 (54.37%), Postives = 98/160 (61.25%), Query Frame = 0 
Query:    3 LGLSSLIDHVPSQCRMCKHEALLRFQQASVSSPSSLLPSSPSPAP--TKIHGPRFGRPASFGGKVGVG---GVAGEPPSLAALTQLGQNSLGGFRTRATGLFGKLQAHAHAAQXXXXXXXXXXXXXXXXXXXXPQQLECVQEMAGTFLKGTVSGLTKRAE 158
            L L++LIDHVPSQCRMCKHEALLRF +AS SS   L PS P+ A   +   GPRF RP SFGG  G     G +GE  SLAAL+QLGQ+SL   R+RATGLFGKLQA   A                      PQQLE V +M G FLKGT+  L KRAE
Sbjct:  752 LTLAALIDHVPSQCRMCKHEALLRFHKASGSSSLPLSPSPPAKASPGSSSTGPRFSRPLSFGGHAGPAFGKGTSGETASLAALSQLGQSSLDVLRSRATGLFGKLQAQGQA----------HGGEEGKEGGGLPQQLETVHDM-GNFLKGTMVSLGKRAE 900
The following BLAST results are available for this feature:
BLAST of NO08G03550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005855621.11.300e-2854.66tbc1 domain family member 23-like protein, partial... [more]
EWM26834.13.700e-2854.38tbc1 domain family member 23 [Nannochloropsis gadi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03550.1NO08G03550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03550.1NO08G03550.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03550 ID=NO08G03550|Name=NO08G03550|organism=Nannochloropsis oceanica|type=gene|length=990bp
ATGAGCTTGGGCCTGTCTTCGTTGATTGACCACGTGCCAAGCCAGTGCCG
AATGTGCAAGCACGAAGCCCTCCTTCGCTTTCAACAAGCATCCGTCTCCT
CCCCTTCCTCTCTCCTGCCCTCCTCCCCGTCTCCTGCCCCCACCAAAATC
CACGGTCCACGCTTCGGCCGTCCCGCCTCCTTTGGAGGAAAGGTTGGGGT
AGGGGGTGTGGCAGGGGAGCCCCCCTCCCTTGCGGCCTTGACTCAATTGG
GACAGAATTCGTTGGGTGGTTTTCGTACACGTGCTACGGGTCTTTTCGGC
AAGCTCCAGGCACACGCCCACGCGGCTCAGGTCCAAGCGCAGGCGCACGC
GCAGGGGGGAGAGGAGGGAGGGAAGGAGGGAGGGGGGCTGCCGCAGCAGT
TGGAGTGCGTTCAGGAGATGGCAGGTACTTTTTTAAAAGGAACTGTGAGT
GGATTGACAAAGAGAGCCGAGCAGGCGATGCAGGAGGCAAGGGGGAGGGC
ACAGGCAGCGCAAGCAGCAGCAACTGCAGCAGCGGCCGGAAATTGGGGGC
GAGACGCGGGTGGTGGTATAGGAAGTGCAGACGGAGCGGGCGGGGGATTA
TCAGCTTCTTTATCTTCGGGTGCGATTGCTGCTGGTGCTGCTGGTGCTGC
TGCTACTGTTGGGGGGAGTGGTAGCATGGATGGTGGTCGTCCTGCGAGTG
CTGATGGACGTGTACCCTCACCACCAACAACGACAGCCGCCCCATCATCA
GAAGCACAAGCTTCAACAGCAGCAGCAGCAGTAATAGCAGCAACAACGAC
GACCGTTCATCGTGACAGCCCCTCCCTCTTTGTGATTGAAGACGACGAGG
ACGAGGACGAGGACGAGGACATCCGCACTCGACAACAACAAGAACAACAG
CATGCCACCCCCTCCCCAATTCATCCCTTTTCGTCGTCATCCCCCCCTCC
TCCACCACCCGCACCAAGAGCGGCCTCGACCGGGATTTAG
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protein sequence of NO08G03550.1

>NO08G03550.1-protein ID=NO08G03550.1-protein|Name=NO08G03550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=330bp
MSLGLSSLIDHVPSQCRMCKHEALLRFQQASVSSPSSLLPSSPSPAPTKI
HGPRFGRPASFGGKVGVGGVAGEPPSLAALTQLGQNSLGGFRTRATGLFG
KLQAHAHAAQVQAQAHAQGGEEGGKEGGGLPQQLECVQEMAGTFLKGTVS
GLTKRAEQAMQEARGRAQAAQAAATAAAAGNWGRDAGGGIGSADGAGGGL
SASLSSGAIAAGAAGAAATVGGSGSMDGGRPASADGRVPSPPTTTAAPSS
EAQASTAAAAVIAATTTTVHRDSPSLFVIEDDEDEDEDEDIRTRQQQEQQ
HATPSPIHPFSSSSPPPPPPAPRAASTGI*
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Synonyms
Publications