NO08G03550.1, NO08G03550.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03550.1
Unique NameNO08G03550.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length990
Alignment locationchr8:989874..990863 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:989874..990863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G03550.1 vs.
Match: XP_005855621.1 (tbc1 domain family member 23-like protein, partial [Nannochloropsis gaditana CCMP526]; EKU20739.1 tbc1 domain family member 23-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 168.7 bits (426), Expect = 3.000e-38
Identity = 112/184 (60.87%), Postives = 126/184 (68.48%), Query Frame = 0 
Query:    2 SLGLSSLIDHVPSQCRMCKHEALLRFQQASVSSPSSLLPSSPSPAP--TKIHGPRFGRPASFGGKVGVG---GVAGEPPSLAALTQLGQNSLGGFRTRATGLFGKLQAHAHAAQVQAQAHAQGGEEGGKEGGGLPQQLECVQEMAGTFLKGTVSGLTKRAEQAMQEARGRAQAAQAAATAAAAG 181
            SL L++LIDHVPSQCRMCKHEALLRF +AS SS   L PS P+ A   +   GPRF RP SFGG  G     G +GE  SLAAL+QLGQ+SL   R+RATGLFGKLQA       Q QAH  GGEE GKEGGGLPQQLE V +M G FLKGT+  L KRAEQA+ EAR +AQ A   A+    G
Sbjct:  257 SLTLAALIDHVPSQCRMCKHEALLRFHKASGSSSLPLSPSPPAKASPGSSSTGPRFSRPLSFGGHAGPAFGKGTSGETASLAALSQLGQSSLDVLRSRATGLFGKLQA-------QGQAH--GGEE-GKEGGGLPQQLETVHDM-GNFLKGTMVSLGKRAEQAVHEARSKAQGAGTGASGGGGG 429
The following BLAST results are available for this feature:
BLAST of NO08G03550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855621.13.000e-3860.87tbc1 domain family member 23-like protein, partial... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03550NO08G03550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03550.1NO08G03550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03550.1.cds1NO08G03550.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03550.1 ID=NO08G03550.1|Name=NO08G03550.1|organism=Nannochloropsis oceanica|type=mRNA|length=990bp
ATGAGCTTGGGCCTGTCTTCGTTGATTGACCACGTGCCAAGCCAGTGCCG
AATGTGCAAGCACGAAGCCCTCCTTCGCTTTCAACAAGCATCCGTCTCCT
CCCCTTCCTCTCTCCTGCCCTCCTCCCCGTCTCCTGCCCCCACCAAAATC
CACGGTCCACGCTTCGGCCGTCCCGCCTCCTTTGGAGGAAAGGTTGGGGT
AGGGGGTGTGGCAGGGGAGCCCCCCTCCCTTGCGGCCTTGACTCAATTGG
GACAGAATTCGTTGGGTGGTTTTCGTACACGTGCTACGGGTCTTTTCGGC
AAGCTCCAGGCACACGCCCACGCGGCTCAGGTCCAAGCGCAGGCGCACGC
GCAGGGGGGAGAGGAGGGAGGGAAGGAGGGAGGGGGGCTGCCGCAGCAGT
TGGAGTGCGTTCAGGAGATGGCAGGTACTTTTTTAAAAGGAACTGTGAGT
GGATTGACAAAGAGAGCCGAGCAGGCGATGCAGGAGGCAAGGGGGAGGGC
ACAGGCAGCGCAAGCAGCAGCAACTGCAGCAGCGGCCGGAAATTGGGGGC
GAGACGCGGGTGGTGGTATAGGAAGTGCAGACGGAGCGGGCGGGGGATTA
TCAGCTTCTTTATCTTCGGGTGCGATTGCTGCTGGTGCTGCTGGTGCTGC
TGCTACTGTTGGGGGGAGTGGTAGCATGGATGGTGGTCGTCCTGCGAGTG
CTGATGGACGTGTACCCTCACCACCAACAACGACAGCCGCCCCATCATCA
GAAGCACAAGCTTCAACAGCAGCAGCAGCAGTAATAGCAGCAACAACGAC
GACCGTTCATCGTGACAGCCCCTCCCTCTTTGTGATTGAAGACGACGAGG
ACGAGGACGAGGACGAGGACATCCGCACTCGACAACAACAAGAACAACAG
CATGCCACCCCCTCCCCAATTCATCCCTTTTCGTCGTCATCCCCCCCTCC
TCCACCACCCGCACCAAGAGCGGCCTCGACCGGGATTTAG
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protein sequence of NO08G03550.1

>NO08G03550.1-protein ID=NO08G03550.1-protein|Name=NO08G03550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=330bp
MSLGLSSLIDHVPSQCRMCKHEALLRFQQASVSSPSSLLPSSPSPAPTKI
HGPRFGRPASFGGKVGVGGVAGEPPSLAALTQLGQNSLGGFRTRATGLFG
KLQAHAHAAQVQAQAHAQGGEEGGKEGGGLPQQLECVQEMAGTFLKGTVS
GLTKRAEQAMQEARGRAQAAQAAATAAAAGNWGRDAGGGIGSADGAGGGL
SASLSSGAIAAGAAGAAATVGGSGSMDGGRPASADGRVPSPPTTTAAPSS
EAQASTAAAAVIAATTTTVHRDSPSLFVIEDDEDEDEDEDIRTRQQQEQQ
HATPSPIHPFSSSSPPPPPPAPRAASTGI*
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mRNA from alignment at chr8:989874..990863+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03550.1 ID=NO08G03550.1|Name=NO08G03550.1|organism=Nannochloropsis oceanica|type=mRNA|length=990bp|location=Sequence derived from alignment at chr8:989874..990863+ (Nannochloropsis oceanica)
ATGAGCTTGGGCCTGTCTTCGTTGATTGACCACGTGCCAAGCCAGTGCCG
AATGTGCAAGCACGAAGCCCTCCTTCGCTTTCAACAAGCATCCGTCTCCT
CCCCTTCCTCTCTCCTGCCCTCCTCCCCGTCTCCTGCCCCCACCAAAATC
CACGGTCCACGCTTCGGCCGTCCCGCCTCCTTTGGAGGAAAGGTTGGGGT
AGGGGGTGTGGCAGGGGAGCCCCCCTCCCTTGCGGCCTTGACTCAATTGG
GACAGAATTCGTTGGGTGGTTTTCGTACACGTGCTACGGGTCTTTTCGGC
AAGCTCCAGGCACACGCCCACGCGGCTCAGGTCCAAGCGCAGGCGCACGC
GCAGGGGGGAGAGGAGGGAGGGAAGGAGGGAGGGGGGCTGCCGCAGCAGT
TGGAGTGCGTTCAGGAGATGGCAGGTACTTTTTTAAAAGGAACTGTGAGT
GGATTGACAAAGAGAGCCGAGCAGGCGATGCAGGAGGCAAGGGGGAGGGC
ACAGGCAGCGCAAGCAGCAGCAACTGCAGCAGCGGCCGGAAATTGGGGGC
GAGACGCGGGTGGTGGTATAGGAAGTGCAGACGGAGCGGGCGGGGGATTA
TCAGCTTCTTTATCTTCGGGTGCGATTGCTGCTGGTGCTGCTGGTGCTGC
TGCTACTGTTGGGGGGAGTGGTAGCATGGATGGTGGTCGTCCTGCGAGTG
CTGATGGACGTGTACCCTCACCACCAACAACGACAGCCGCCCCATCATCA
GAAGCACAAGCTTCAACAGCAGCAGCAGCAGTAATAGCAGCAACAACGAC
GACCGTTCATCGTGACAGCCCCTCCCTCTTTGTGATTGAAGACGACGAGG
ACGAGGACGAGGACGAGGACATCCGCACTCGACAACAACAAGAACAACAG
CATGCCACCCCCTCCCCAATTCATCCCTTTTCGTCGTCATCCCCCCCTCC
TCCACCACCCGCACCAAGAGCGGCCTCGACCGGGATTTAG
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Coding sequence (CDS) from alignment at chr8:989874..990863+

>NO08G03550.1 ID=NO08G03550.1|Name=NO08G03550.1|organism=Nannochloropsis oceanica|type=CDS|length=990bp|location=Sequence derived from alignment at chr8:989874..990863+ (Nannochloropsis oceanica)
ATGAGCTTGGGCCTGTCTTCGTTGATTGACCACGTGCCAAGCCAGTGCCG
AATGTGCAAGCACGAAGCCCTCCTTCGCTTTCAACAAGCATCCGTCTCCT
CCCCTTCCTCTCTCCTGCCCTCCTCCCCGTCTCCTGCCCCCACCAAAATC
CACGGTCCACGCTTCGGCCGTCCCGCCTCCTTTGGAGGAAAGGTTGGGGT
AGGGGGTGTGGCAGGGGAGCCCCCCTCCCTTGCGGCCTTGACTCAATTGG
GACAGAATTCGTTGGGTGGTTTTCGTACACGTGCTACGGGTCTTTTCGGC
AAGCTCCAGGCACACGCCCACGCGGCTCAGGTCCAAGCGCAGGCGCACGC
GCAGGGGGGAGAGGAGGGAGGGAAGGAGGGAGGGGGGCTGCCGCAGCAGT
TGGAGTGCGTTCAGGAGATGGCAGGTACTTTTTTAAAAGGAACTGTGAGT
GGATTGACAAAGAGAGCCGAGCAGGCGATGCAGGAGGCAAGGGGGAGGGC
ACAGGCAGCGCAAGCAGCAGCAACTGCAGCAGCGGCCGGAAATTGGGGGC
GAGACGCGGGTGGTGGTATAGGAAGTGCAGACGGAGCGGGCGGGGGATTA
TCAGCTTCTTTATCTTCGGGTGCGATTGCTGCTGGTGCTGCTGGTGCTGC
TGCTACTGTTGGGGGGAGTGGTAGCATGGATGGTGGTCGTCCTGCGAGTG
CTGATGGACGTGTACCCTCACCACCAACAACGACAGCCGCCCCATCATCA
GAAGCACAAGCTTCAACAGCAGCAGCAGCAGTAATAGCAGCAACAACGAC
GACCGTTCATCGTGACAGCCCCTCCCTCTTTGTGATTGAAGACGACGAGG
ACGAGGACGAGGACGAGGACATCCGCACTCGACAACAACAAGAACAACAG
CATGCCACCCCCTCCCCAATTCATCCCTTTTCGTCGTCATCCCCCCCTCC
TCCACCACCCGCACCAAGAGCGGCCTCGACCGGGATTTAG
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Synonyms
Publications