NO08G03370, NO08G03370 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO08G03370
Unique Name	NO08G03370
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2192
Alignment location	chr8:932764..934955 -

Link to JBrowse

Properties


Property Name	Value
Description	Pectin lyase fold/virulence factor

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr8	genome	chr8:932764..934955 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016829	lyase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane
GO:0016020	membrane

Homology

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BLAST of NO08G03370 vs. NCBI_GenBank
Match: EWM26817.1 (Pectin lyase fold/virulence factor [Nannochloropsis gaditana])

HSP 1 Score: 413.3 bits (1061), Expect = 1.500e-111
Identity = 289/712 (40.59%), Postives = 383/712 (53.79%), Query Frame = 0

Query:   57 RCGYTGTPAIVGTSRNLFNVYVSGNFINLNATTDVVLATHKRFEVWESE--EKRGRDV----------EEYGGRGLEDGREEG---EERGPTQKVYELMGSIKASSVIMRHVGWKEEGIEEFKVAFRESV-GS--GGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXFDLASFVQWPQHLRQLQHHRRVLEGQEAPSATASHPALDSITTDESSKPITTSAAATVAVAEGQALSFLLPAAAAFNTSLYMPLFPYSPILVPLADPRTTSIGKVFLASRLDRCQACDITGPGFDSFEVAREGEQQ---QQQLVTAAHFHGQGTEGCDFKESCGTLAEEEEEEWRENEEQMWMSDPERGIQPNTSLAVLDLLVTYTPS--SFASSTFSSSSEVEPQHVLAAVNQTMQRLGLSK----------------------SERGR-----LQQVWEEEHG------PCSSTAPFRAYVVTDQRQVAGRASNSLRQSATASLLTKALQEQNPSVCQVSTTRVSAFHVPSLNASALVLQPSGNGRKEGGKVGGYMARVIGSAAKAMPQIDLGGVVVGLGEHGLQHRSLQYPLQHEPQLPTAAVXXXXXXXXXXXXXXXXXXXXXXHVGQVVMGQRYRVSLHDFPPGRLLSLRLVPKVGPSTLIGLTLSS---SSSSPF---SAGRNEWLWVVSEGKHAEGEYFIEIASQAKDTFSYTHAFELV 707
            R GYTGTPAIV T+ NLFN YV+GNF +LN++TDVVLAT   F +W++    KRG                     +  REEG   E  GP+Q+ Y +    + SSVIMRHV W+E G+E+FK AFR+ + GS  GGEG                            ++ S ++WP +LRQLQHHRRV   Q      A+   L S+    + + +  +  +   V +G      L AA  FN S Y PL P SPILVP  DP TT+  KV+LAS L RCQACD+ GP   +    +EGE +   +   +T+AHF+G G  GC+F++ CGT+ EE E + +E +EQMWMSDPERGIQPNT+L ++D +V+Y PS            + V  +HV  AVNQTMQ LGLS+                       E G      L+Q    E G       C++TAPFRAY+VTD  +VA +AS   R+++T  LLT  +Q Q PSVC V+T+   +F+VPS+NASAL+        KE  K   ++AR+ GS   A+ Q  +    +   +  L      +  +  PQ PTAA+                       V +VVMG+ YR+ L  FPPGRLLSLRLVPK G STL+G+T+SS   +SS PF   S    EW W VS  KH  G+YFIE+ SQ +D F+YT AF L+
Sbjct:  611 RVGYTGTPAIVATNPNLFNFYVAGNFFSLNSSTDVVLATRNVFIIWDAPGVGKRGMSAXXXXXXXXXXXXXXAEEQDRWREEGARVEPGGPSQEQYAVTALGRTSSVIMRHVSWQENGLEDFKAAFRKGILGSEPGGEG----------------SVEAAGTRNGVLNVGSLLRWPHYLRQLQHHRRVQVEQ------AAGGPLSSVDPPRAPETLAPNTGSFPPVEQGDVGPSTLSAAMLFNASFYTPLAPGSPILVPRPDPATTTTNKVYLASTLGRCQACDVRGPRMRA--GGQEGEVEGDLEAPALTSAHFNGAGAAGCEFRDVCGTVQEEVERDAQEMQEQMWMSDPERGIQPNTTLGIMDFVVSYAPSLPPHPHGPSRGGTAVTAEHVQTAVNQTMQSLGLSQRLLLRVVATGNAPPYSSSNHGVGESGEAGSRSLEQAETREGGIGGGEPECTATAPFRAYLVTDHWKVANQASKRFREASTVLLLTDTIQAQVPSVCGVTTSNTFSFYVPSVNASALL-------AKEKDK-NNFIARITGSTENAVTQY-IRDDDLQSSDGFLSTEPFDFG-EEGPQQPTAAL--LAITSQNAKEEVEDNDVEQVRVFRVVMGKSYRLILRGFPPGRLLSLRLVPKEGRSTLLGMTMSSLPTASSLPFLSASTSSQEWTWSVSRTKHEAGDYFIEVTSQTQDAFAYTQAFALL 1286

The following BLAST results are available for this feature:

BLAST of NO08G03370 vs. NCBI_GenBank

BLAST of NO08G03370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1


Match Name	E-value	Identity	Description
EWM26817.1	1.500e-111	40.59	Pectin lyase fold/virulence factor [Nannochloropsi...	[more]

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL109	nonsL109	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR083	ncniR083	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR141	ngnoR141	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK008680	NSK008680	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO08G03370.1	NO08G03370.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669597	gene_3669	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100018g27	gene3730	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO08G03370.1	NO08G03370.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO08G03370 ID=NO08G03370|Name=NO08G03370|organism=Nannochloropsis oceanica|type=gene|length=2192bp
ATGGCTATAAGTGTGATTGTATATGTGGCGGCAGCGGGGGGGGACGTGTG
TGTGATGGCCGGGTGGCTAACGATGGTGAATAATTACTTTTTCAAGTACG
TGGTGATCGCGACCTACCATGGACAGGGGGTGGATATGTGCGTCGTGGCT
GGGGGGGCCTTGCTTGTCCGATGCGGATACACGGGGACCCCGGCAATCGT
GGGAACAAGTCGGAACCTGTTCAATGTCTATGTTAGTGGTAATTTTATTA
ATTTAAATGCAACAACTGATGTGGTGCTTGCTACACACAAGAGGTTCGAA
GTATGGGAGTCGGAGGAGAAGCGGGGGAGGGATGTAGAAGAGTACGGAGG
GAGAGGATTAGAGGATGGGAGGGAGGAAGGGGAGGAGAGAGGGCCGACGC
AGAAAGTGTATGAATTGATGGGATCGATAAAGGCCAGTAGTGTCATTATG
AGGCATGTGGGGTGGAAGGAGGAAGGAATCGAGGAATTTAAGGTGGCGTT
TAGAGAAAGTGTAGGGAGTGGTGGTGAAGGCAATGATGCTGCCACTGCCG
CTAGCGCTGGTGCTAATACTGCTGCTGCTCCTGCTGCTGCTGCTGGTGGT
GGTGATGATGAGTTTGACCTGGCCAGTTTCGTACAGTGGCCGCAACATCT
ACGACAGCTGCAGCACCACCGACGGGTCCTGGAGGGGCAGGAAGCCCCCA
GTGCTACTGCTTCTCATCCCGCTCTCGACAGCATCACCACCGACGAAAGC
TCCAAGCCAATAACAACATCAGCAGCAGCAACAGTAGCAGTAGCAGAAGG
CCAAGCCCTCTCCTTCCTCCTCCCTGCAGCTGCGGCATTCAACACGTCCC
TTTACATGCCTCTCTTCCCCTACAGCCCAATCCTCGTCCCTCTCGCTGAC
CCCCGAACGACAAGTATCGGTAAAGTCTTCCTTGCCTCCCGCCTGGATCG
TTGCCAAGCATGCGATATTACGGGCCCCGGCTTCGACTCCTTTGAGGTAG
CCAGAGAAGGAGAGCAGCAGCAGCAGCAGTTGGTGACAGCAGCGCACTTT
CATGGACAGGGTACGGAGGGATGTGACTTTAAGGAGAGTTGTGGGACGCT
GGCAGAGGAAGAGGAAGAAGAGTGGCGGGAGAATGAGGAGCAGATGTGGA
TGTCGGACCCGGAACGTGGCATTCAGCCGAATACCAGCTTGGCGGTTCTG
GACTTGCTTGTCACCTACACCCCTTCCTCCTTCGCGTCCTCGACCTTTAG
CAGCAGCAGTGAGGTCGAACCTCAACATGTCCTGGCAGCTGTCAATCAGA
CCATGCAACGCCTAGGGCTCTCCAAAAGgttactcctacgtgttgtctcc
aacaccggtaccccccctatactcctctcggtaccgacgacaacagCGAA
AGAGGAAGGCTGCAACAGGTGTGGGAAGAGGAGCATGGGCCGTGTTCGTC
CACGGCACCTTTCCGCGCGTATGTGGTGACGGATCAAAGACAGGTAGCAG
GCCGAGCGAGCAACAGCTTGAGGCAATCCGCCACTGCTTCTCTGTTGACC
AAAGCCTTGCAAGAGCAAAATCCCTCTGTCTGCCAAGTCTCAACTACCAG
GGTCTCTGCCTTCCATGTGCCTTCTTTAAATGCCTCAGCGCTGGTGCTGC
AGCCAAGCGGAAATGGAAGGAAGGAGGGAGGGAAGGTAGGGGGCTACATG
GCGAGGGTCATTGGCAGTGCTGCTAAAGCAATGCCACAGATCGATTTGGG
TGGCGTTGTGGTGGGCCTTGGTGAACACGGGTTGCAGCATCGGTCCTTGC
AATACCCACTACAGCACGAGCCACAATTGCCTACCGCGGCGGTGTTGATG
GTGGTGGATGGAAAGGAGGAAGAGGAAGAGGAGGAGAGGAAGGAGGAGGG
GCATGGAGGTCACGTTGGTCAAGTGGTGATGGGCCAACGCTACCGTGTGT
CCCTGCATGATTTCCCTCCTGGACGTTTACTCAGCCTTCGCTTGGTGCCC
AAGGTGGGGCCAAGCACGCTTATCGGCCTGACTCTATCCTCCTCTTCTTC
CTCTCCGTTTTCTGCGGGTAGGAATGAGTGGTTGTGGGTGGTCTCGGAGG
GCAAGCATGCCGAGGGGGAGTATTTTATTGAGATTGCATCACAAGCCAAA
GACACCTTTTCTTATACCCATGCATTCGAATTGGTGGCATAG

protein sequence of NO08G03370.1

>NO08G03370.1-protein ID=NO08G03370.1-protein|Name=NO08G03370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=708bp
MAISVIVYVAAAGGDVCVMAGWLTMVNNYFFKYVVIATYHGQGVDMCVVA
GGALLVRCGYTGTPAIVGTSRNLFNVYVSGNFINLNATTDVVLATHKRFE
VWESEEKRGRDVEEYGGRGLEDGREEGEERGPTQKVYELMGSIKASSVIM
RHVGWKEEGIEEFKVAFRESVGSGGEGNDAATAASAGANTAAAPAAAAGG
GDDEFDLASFVQWPQHLRQLQHHRRVLEGQEAPSATASHPALDSITTDES
SKPITTSAAATVAVAEGQALSFLLPAAAAFNTSLYMPLFPYSPILVPLAD
PRTTSIGKVFLASRLDRCQACDITGPGFDSFEVAREGEQQQQQLVTAAHF
HGQGTEGCDFKESCGTLAEEEEEEWRENEEQMWMSDPERGIQPNTSLAVL
DLLVTYTPSSFASSTFSSSSEVEPQHVLAAVNQTMQRLGLSKSERGRLQQ
VWEEEHGPCSSTAPFRAYVVTDQRQVAGRASNSLRQSATASLLTKALQEQ
NPSVCQVSTTRVSAFHVPSLNASALVLQPSGNGRKEGGKVGGYMARVIGS
AAKAMPQIDLGGVVVGLGEHGLQHRSLQYPLQHEPQLPTAAVLMVVDGKE
EEEEEERKEEGHGGHVGQVVMGQRYRVSLHDFPPGRLLSLRLVPKVGPST
LIGLTLSSSSSSPFSAGRNEWLWVVSEGKHAEGEYFIEIASQAKDTFSYT
HAFELVA*

Synonyms

Publications