NO08G03080, NO08G03080 (gene) Nannochloropsis oceanica

Overview
NameNO08G03080
Unique NameNO08G03080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length704
Alignment locationchr8:853461..854164 -

Link to JBrowse

Properties
Property NameValue
DescriptionKinesin-like protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:853461..854164 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003777microtubule motor activity
GO:0008017microtubule binding
GO:0005524ATP binding
GO:0005515protein binding
GO:0003774motor activity
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0007018microtubule-based movement
GO:0009987cellular process
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR027640Kinesin-like_fam
IPR001752Kinesin_motor_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005856cytoskeleton
Homology
[Close]
BLAST of NO08G03080 vs. NCBI_GenBank
Match: EWM26774.1 (di-glucose binding, kinesin motor domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 185.3 bits (469), Expect = 1.200e-43
Identity = 90/107 (84.11%), Postives = 99/107 (92.52%), Query Frame = 0 
Query:    1 MAFEFDRVFAPGSTQGEVFEAVAPIVTSVLDGYSACIFAYGQTGSGKTHTMDGPPEDRGVNFRALEEVFRLREERKGEMRYTLSLSMLEVYNETIRDLLAGGGRAKG 108
            MAFEFDRVFAPGS+Q EVFEAVAPIVTSV+DGYSACIFAYGQTGSGKTHTM+GP EDRGVNFRALEE+FRLR++R+ +M YTLSLSMLEVYNETIRDLLA  G+  G
Sbjct:  546 MAFEFDRVFAPGSSQAEVFEAVAPIVTSVMDGYSACIFAYGQTGSGKTHTMEGPSEDRGVNFRALEEMFRLRQDRQADMCYTLSLSMLEVYNETIRDLLAAKGKGGG 652
[Close]
BLAST of NO08G03080 vs. NCBI_GenBank
Match: AMS24251.1 (kinesin 14-IIIa protein [Marsilea vestita])

HSP 1 Score: 145.6 bits (366), Expect = 1.100e-31
Identity = 67/98 (68.37%), Postives = 80/98 (81.63%), Query Frame = 0 
Query:    3 FEFDRVFAPGSTQGEVFEAVAPIVTSVLDGYSACIFAYGQTGSGKTHTMDGPPEDRGVNFRALEEVFRLREERKGEMRYTLSLSMLEVYNETIRDLLA 101
            F+FDRVF P + Q +VF   AP+V SVLDGY+ CIFAYGQTG+GKTHTM+G   DRGVN+R LEE+FRL  ERKG+  YT+S+S+LEVYNE IRDLLA
Sbjct:  573 FKFDRVFTPSNNQTDVFADTAPVVVSVLDGYNVCIFAYGQTGTGKTHTMEGTENDRGVNYRTLEELFRLASERKGQFEYTISVSVLEVYNEQIRDLLA 670
[Close]
BLAST of NO08G03080 vs. NCBI_GenBank
Match: XP_009529338.1 (hypothetical protein PHYSODRAFT_508410 [Phytophthora sojae] >EGZ15589.1 hypothetical protein PHYSODRAFT_508410 [Phytophthora sojae])

HSP 1 Score: 144.8 bits (364), Expect = 1.900e-31
Identity = 72/114 (63.16%), Postives = 84/114 (73.68%), Query Frame = 0 
Query:    2 AFEFDRVFAPGSTQGEVFEAVAPIVTSVLDGYSACIFAYGQTGSGKTHTMDGPPEDRGVNFRALEEVFRLREER--KGEMRYTLSLSMLEVYNETIRDLLAGGGRAKGEGREAS 114
            AFEFD VF P STQ +VFE    +V S LDG++ CIFAYGQTGSGKTHTM+GP  DRGVNFRAL E+F +R++R   G    +L LS+LEVYNETI DLL GGGRA G    A+
Sbjct:  772 AFEFDHVFQPNSTQEQVFEQTRALVVSALDGFNVCIFAYGQTGSGKTHTMEGPENDRGVNFRALRELFSIRDDRMAAGNFECSLKLSILEVYNETIVDLLEGGGRAPGAASPAA 885
[Close]
BLAST of NO08G03080 vs. NCBI_GenBank
Match: KUF97790.1 (hypothetical protein AM588_10009795 [Phytophthora nicotianae])

HSP 1 Score: 142.5 bits (358), Expect = 9.200e-31
Identity = 70/108 (64.81%), Postives = 81/108 (75.00%), Query Frame = 0 
Query:    2 AFEFDRVFAPGSTQGEVFEAVAPIVTSVLDGYSACIFAYGQTGSGKTHTMDGPPEDRGVNFRALEEVFRLREER--KGEMRYTLSLSMLEVYNETIRDLLAGGGRAKG 108
            AFEFD VF P STQ +VFE    +V S LDGY+ CIFAYGQTGSGKTHTM+GP  DRGVNFRAL E+F +R++R   G    ++ LS+LEVYNETI DLL GGGR  G
Sbjct:  470 AFEFDHVFQPESTQEQVFEQTRALVVSALDGYNVCIFAYGQTGSGKTHTMEGPEHDRGVNFRALRELFSIRDDRMAAGNFECSMKLSILEVYNETIVDLLEGGGRTPG 577
[Close]
BLAST of NO08G03080 vs. NCBI_GenBank
Match: KUF98223.1 (Kinesin protein KIFC3 [Phytophthora nicotianae])

HSP 1 Score: 142.5 bits (358), Expect = 9.200e-31
Identity = 70/108 (64.81%), Postives = 81/108 (75.00%), Query Frame = 0 
Query:    2 AFEFDRVFAPGSTQGEVFEAVAPIVTSVLDGYSACIFAYGQTGSGKTHTMDGPPEDRGVNFRALEEVFRLREER--KGEMRYTLSLSMLEVYNETIRDLLAGGGRAKG 108
            AFEFD VF P STQ +VFE    +V S LDGY+ CIFAYGQTGSGKTHTM+GP  DRGVNFRAL E+F +R++R   G    ++ LS+LEVYNETI DLL GGGR  G
Sbjct:  719 AFEFDHVFQPESTQEQVFEQTRALVVSALDGYNVCIFAYGQTGSGKTHTMEGPEHDRGVNFRALRELFSIRDDRMAAGNFECSMKLSILEVYNETIVDLLEGGGRTPG 826
[Close]
BLAST of NO08G03080 vs. NCBI_GenBank
Match: XP_004252098.1 (PREDICTED: uncharacterized protein LOC101255070 isoform X1 [Solanum lycopersicum])

HSP 1 Score: 142.1 bits (357), Expect = 1.200e-30
Identity = 66/102 (64.71%), Postives = 82/102 (80.39%), Query Frame = 0 
Query:    3 FEFDRVFAPGSTQGEVFEAVAPIVTSVLDGYSACIFAYGQTGSGKTHTMDGPPEDRGVNFRALEEVFRLREERKGEMRYTLSLSMLEVYNETIRDLLAGGGR 105
            F+FD +F+P + Q EVFE  AP+ TSVLDGY+ACIFAYGQTG+GKT TM+G  E RGVN+R LEE+FR+ EERK  +RY +S+S+LEVYNE IRDLL  G +
Sbjct:  547 FKFDAIFSPQANQAEVFEDTAPLATSVLDGYNACIFAYGQTGTGKTFTMEGTEESRGVNYRTLEELFRIIEERKNAVRYEISVSVLEVYNEQIRDLLVSGSQ 648
[Close]
BLAST of NO08G03080 vs. NCBI_GenBank
Match: XP_010313875.1 (PREDICTED: uncharacterized protein LOC101255070 isoform X2 [Solanum lycopersicum])

HSP 1 Score: 142.1 bits (357), Expect = 1.200e-30
Identity = 66/102 (64.71%), Postives = 82/102 (80.39%), Query Frame = 0 
Query:    3 FEFDRVFAPGSTQGEVFEAVAPIVTSVLDGYSACIFAYGQTGSGKTHTMDGPPEDRGVNFRALEEVFRLREERKGEMRYTLSLSMLEVYNETIRDLLAGGGR 105
            F+FD +F+P + Q EVFE  AP+ TSVLDGY+ACIFAYGQTG+GKT TM+G  E RGVN+R LEE+FR+ EERK  +RY +S+S+LEVYNE IRDLL  G +
Sbjct:  546 FKFDAIFSPQANQAEVFEDTAPLATSVLDGYNACIFAYGQTGTGKTFTMEGTEESRGVNYRTLEELFRIIEERKNAVRYEISVSVLEVYNEQIRDLLVSGSQ 647
[Close]
BLAST of NO08G03080 vs. NCBI_GenBank
Match: XP_010313876.1 (PREDICTED: uncharacterized protein LOC101255070 isoform X3 [Solanum lycopersicum])

HSP 1 Score: 142.1 bits (357), Expect = 1.200e-30
Identity = 66/102 (64.71%), Postives = 82/102 (80.39%), Query Frame = 0 
Query:    3 FEFDRVFAPGSTQGEVFEAVAPIVTSVLDGYSACIFAYGQTGSGKTHTMDGPPEDRGVNFRALEEVFRLREERKGEMRYTLSLSMLEVYNETIRDLLAGGGR 105
            F+FD +F+P + Q EVFE  AP+ TSVLDGY+ACIFAYGQTG+GKT TM+G  E RGVN+R LEE+FR+ EERK  +RY +S+S+LEVYNE IRDLL  G +
Sbjct:  526 FKFDAIFSPQANQAEVFEDTAPLATSVLDGYNACIFAYGQTGTGKTFTMEGTEESRGVNYRTLEELFRIIEERKNAVRYEISVSVLEVYNEQIRDLLVSGSQ 627
[Close]
BLAST of NO08G03080 vs. NCBI_GenBank
Match: XP_010313878.1 (PREDICTED: uncharacterized protein LOC101255070 isoform X4 [Solanum lycopersicum])

HSP 1 Score: 142.1 bits (357), Expect = 1.200e-30
Identity = 66/102 (64.71%), Postives = 82/102 (80.39%), Query Frame = 0 
Query:    3 FEFDRVFAPGSTQGEVFEAVAPIVTSVLDGYSACIFAYGQTGSGKTHTMDGPPEDRGVNFRALEEVFRLREERKGEMRYTLSLSMLEVYNETIRDLLAGGGR 105
            F+FD +F+P + Q EVFE  AP+ TSVLDGY+ACIFAYGQTG+GKT TM+G  E RGVN+R LEE+FR+ EERK  +RY +S+S+LEVYNE IRDLL  G +
Sbjct:  525 FKFDAIFSPQANQAEVFEDTAPLATSVLDGYNACIFAYGQTGTGKTFTMEGTEESRGVNYRTLEELFRIIEERKNAVRYEISVSVLEVYNEQIRDLLVSGSQ 626
[Close]
BLAST of NO08G03080 vs. NCBI_GenBank
Match: XP_010313879.1 (PREDICTED: uncharacterized protein LOC101255070 isoform X5 [Solanum lycopersicum])

HSP 1 Score: 142.1 bits (357), Expect = 1.200e-30
Identity = 66/102 (64.71%), Postives = 82/102 (80.39%), Query Frame = 0 
Query:    3 FEFDRVFAPGSTQGEVFEAVAPIVTSVLDGYSACIFAYGQTGSGKTHTMDGPPEDRGVNFRALEEVFRLREERKGEMRYTLSLSMLEVYNETIRDLLAGGGR 105
            F+FD +F+P + Q EVFE  AP+ TSVLDGY+ACIFAYGQTG+GKT TM+G  E RGVN+R LEE+FR+ EERK  +RY +S+S+LEVYNE IRDLL  G +
Sbjct:  508 FKFDAIFSPQANQAEVFEDTAPLATSVLDGYNACIFAYGQTGTGKTFTMEGTEESRGVNYRTLEELFRIIEERKNAVRYEISVSVLEVYNEQIRDLLVSGSQ 609
The following BLAST results are available for this feature:
BLAST of NO08G03080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26774.11.200e-4384.11di-glucose binding, kinesin motor domain containin... [more]
AMS24251.11.100e-3168.37kinesin 14-IIIa protein [Marsilea vestita][more]
XP_009529338.11.900e-3163.16hypothetical protein PHYSODRAFT_508410 [Phytophtho... [more]
KUF97790.19.200e-3164.81hypothetical protein AM588_10009795 [Phytophthora ... [more]
KUF98223.19.200e-3164.81Kinesin protein KIFC3 [Phytophthora nicotianae][more]
XP_004252098.11.200e-3064.71PREDICTED: uncharacterized protein LOC101255070 is... [more]
XP_010313875.11.200e-3064.71PREDICTED: uncharacterized protein LOC101255070 is... [more]
XP_010313876.11.200e-3064.71PREDICTED: uncharacterized protein LOC101255070 is... [more]
XP_010313878.11.200e-3064.71PREDICTED: uncharacterized protein LOC101255070 is... [more]
XP_010313879.11.200e-3064.71PREDICTED: uncharacterized protein LOC101255070 is... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03080.1NO08G03080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03080.1NO08G03080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03080 ID=NO08G03080|Name=NO08G03080|organism=Nannochloropsis oceanica|type=gene|length=704bp
ATGGCGTTTGAATTCGATCGGGTGTTTGCACCGGGATCGACACAGGGGGA
GGTATTTGAGGCCGTGGCGCCGATAGTGACAAGCGTGCTGGACGGGTATT
CGgtgcgtaaaatgggtgggggggggagagtgggcgaggatgggatggag
gaaggctggtcaaatatgtatgtgcgtttcattctccttactcctctctt
tttcatcctcttttcctcctcattaacagGCGTGCATTTTTGCATATGGT
CAAACGGGCAGgtgggtaggatgggcagggtctgctgaaggcgggaggga
gggagggagggagggagggagggaggaaaggatgacgatgggaatcgatc
tctttcgtgtactaatccaagatatcattttcttacatccctcccttgtc
tctccccttcttcctccttttcgatggtccttgcttgcactgcagTGGCA
AGACCCATACGATGGACGGGCCGCCGGAGGACCGGGGAGTGAACTTTCGC
GCCCTGGAAGAGGTCTTCCGCTTGCGGGAGGAGAGAAAGGGGGAGATGAG
ATACACGCTGTCATTGAGCATGCTCGAAGTGTACAATGAGACGATTCGGG
ATTTGTTGGCGGGGGGGGGAAGGGCAAAGGGGGAGGGGAGGGAAGCAAGC
TGGACATTCGGATGGGGGAGGATGGTGGCTATGAAGTACAGGGCCTACGT
TTAG
back to top

protein sequence of NO08G03080.1

>NO08G03080.1-protein ID=NO08G03080.1-protein|Name=NO08G03080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=131bp
MAFEFDRVFAPGSTQGEVFEAVAPIVTSVLDGYSACIFAYGQTGSGKTHT
MDGPPEDRGVNFRALEEVFRLREERKGEMRYTLSLSMLEVYNETIRDLLA
GGGRAKGEGREASWTFGWGRMVAMKYRAYV*
back to top
Synonyms
Publications