NO08G03080.1, NO08G03080.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03080.1
Unique NameNO08G03080.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length393
Alignment locationchr8:853461..854164 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:853461..854164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G03080.1 vs.
Match: EWM26774.1 (di-glucose binding, kinesin motor domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 185.3 bits (469), Expect = 1.200e-43
Identity = 90/107 (84.11%), Postives = 99/107 (92.52%), Query Frame = 0 
Query:    1 MAFEFDRVFAPGSTQGEVFEAVAPIVTSVLDGYSACIFAYGQTGSGKTHTMDGPPEDRGVNFRALEEVFRLREERKGEMRYTLSLSMLEVYNETIRDLLAGGGRAKG 108
            MAFEFDRVFAPGS+Q EVFEAVAPIVTSV+DGYSACIFAYGQTGSGKTHTM+GP EDRGVNFRALEE+FRLR++R+ +M YTLSLSMLEVYNETIRDLLA  G+  G
Sbjct:  546 MAFEFDRVFAPGSSQAEVFEAVAPIVTSVMDGYSACIFAYGQTGSGKTHTMEGPSEDRGVNFRALEEMFRLRQDRQADMCYTLSLSMLEVYNETIRDLLAAKGKGGG 652
The following BLAST results are available for this feature:
BLAST of NO08G03080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26774.11.200e-4384.11di-glucose binding, kinesin motor domain containin... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03080NO08G03080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03080.1NO08G03080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03080.1.cds1NO08G03080.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03080.1.cds2NO08G03080.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03080.1.cds3NO08G03080.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03080.1 ID=NO08G03080.1|Name=NO08G03080.1|organism=Nannochloropsis oceanica|type=mRNA|length=393bp
ATGGCGTTTGAATTCGATCGGGTGTTTGCACCGGGATCGACACAGGGGGA
GGTATTTGAGGCCGTGGCGCCGATAGTGACAAGCGTGCTGGACGGGTATT
CGGCGTGCATTTTTGCATATGGTCAAACGGGCAGTGGCAAGACCCATACG
ATGGACGGGCCGCCGGAGGACCGGGGAGTGAACTTTCGCGCCCTGGAAGA
GGTCTTCCGCTTGCGGGAGGAGAGAAAGGGGGAGATGAGATACACGCTGT
CATTGAGCATGCTCGAAGTGTACAATGAGACGATTCGGGATTTGTTGGCG
GGGGGGGGAAGGGCAAAGGGGGAGGGGAGGGAAGCAAGCTGGACATTCGG
ATGGGGGAGGATGGTGGCTATGAAGTACAGGGCCTACGTTTAG
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protein sequence of NO08G03080.1

>NO08G03080.1-protein ID=NO08G03080.1-protein|Name=NO08G03080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=131bp
MAFEFDRVFAPGSTQGEVFEAVAPIVTSVLDGYSACIFAYGQTGSGKTHT
MDGPPEDRGVNFRALEEVFRLREERKGEMRYTLSLSMLEVYNETIRDLLA
GGGRAKGEGREASWTFGWGRMVAMKYRAYV*
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mRNA from alignment at chr8:853461..854164-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03080.1 ID=NO08G03080.1|Name=NO08G03080.1|organism=Nannochloropsis oceanica|type=mRNA|length=704bp|location=Sequence derived from alignment at chr8:853461..854164- (Nannochloropsis oceanica)
ATGGCGTTTGAATTCGATCGGGTGTTTGCACCGGGATCGACACAGGGGGA
GGTATTTGAGGCCGTGGCGCCGATAGTGACAAGCGTGCTGGACGGGTATT
CGGTGCGTAAAATGGGTGGGGGGGGGAGAGTGGGCGAGGATGGGATGGAG
GAAGGCTGGTCAAATATGTATGTGCGTTTCATTCTCCTTACTCCTCTCTT
TTTCATCCTCTTTTCCTCCTCATTAACAGGCGTGCATTTTTGCATATGGT
CAAACGGGCAGGTGGGTAGGATGGGCAGGGTCTGCTGAAGGCGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGAAAGGATGACGATGGGAATCGATC
TCTTTCGTGTACTAATCCAAGATATCATTTTCTTACATCCCTCCCTTGTC
TCTCCCCTTCTTCCTCCTTTTCGATGGTCCTTGCTTGCACTGCAGTGGCA
AGACCCATACGATGGACGGGCCGCCGGAGGACCGGGGAGTGAACTTTCGC
GCCCTGGAAGAGGTCTTCCGCTTGCGGGAGGAGAGAAAGGGGGAGATGAG
ATACACGCTGTCATTGAGCATGCTCGAAGTGTACAATGAGACGATTCGGG
ATTTGTTGGCGGGGGGGGGAAGGGCAAAGGGGGAGGGGAGGGAAGCAAGC
TGGACATTCGGATGGGGGAGGATGGTGGCTATGAAGTACAGGGCCTACGT
TTAG
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Coding sequence (CDS) from alignment at chr8:853461..854164-

>NO08G03080.1 ID=NO08G03080.1|Name=NO08G03080.1|organism=Nannochloropsis oceanica|type=CDS|length=393bp|location=Sequence derived from alignment at chr8:853461..854164- (Nannochloropsis oceanica)
ATGGCGTTTGAATTCGATCGGGTGTTTGCACCGGGATCGACACAGGGGGA
GGTATTTGAGGCCGTGGCGCCGATAGTGACAAGCGTGCTGGACGGGTATT
CGGCGTGCATTTTTGCATATGGTCAAACGGGCAGTGGCAAGACCCATACG
ATGGACGGGCCGCCGGAGGACCGGGGAGTGAACTTTCGCGCCCTGGAAGA
GGTCTTCCGCTTGCGGGAGGAGAGAAAGGGGGAGATGAGATACACGCTGT
CATTGAGCATGCTCGAAGTGTACAATGAGACGATTCGGGATTTGTTGGCG
GGGGGGGGAAGGGCAAAGGGGGAGGGGAGGGAAGCAAGCTGGACATTCGG
ATGGGGGAGGATGGTGGCTATGAAGTACAGGGCCTACGTTTAG
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Synonyms
Publications