NO08G03070, NO08G03070 (gene) Nannochloropsis oceanica

Overview
NameNO08G03070
Unique NameNO08G03070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1013
Alignment locationchr8:852371..853383 -

Link to JBrowse

Properties
Property NameValue
DescriptionKinesin-like protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:852371..853383 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003777microtubule motor activity
GO:0008017microtubule binding
GO:0005524ATP binding
GO:0005515protein binding
GO:0003774motor activity
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0007018microtubule-based movement
GO:0009987cellular process
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR027640Kinesin-like_fam
IPR001752Kinesin_motor_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005856cytoskeleton
Homology
[Close]
BLAST of NO08G03070 vs. NCBI_GenBank
Match: EWM26774.1 (di-glucose binding, kinesin motor domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 255.8 bits (652), Expect = 1.300e-64
Identity = 135/147 (91.84%), Postives = 141/147 (95.92%), Query Frame = 0 
Query:    1 MNEHSSRSHSIVSVRVRGESLQGDRSLATVSKLHLIDLAGSERLSKTDATGDRLKEAQNINKSLSALGDVINALGSKNKAHVPFRNSKLTFLLQDSLGGNSKVLMFVNISPASYNVSETVCSLQFAGRCRAVALGVAKKGVVGSGPG 148
            MNEHSSRSH IVS+RVRGE+L  D+SLATVSKLHLIDLAGSERLSKTDATGDRLKEAQNINKSLSALGDVINALGSKNKAH+P+RNSKLTFLLQDSLGGNSKVLMFVNISPASYNVSETVCSLQFAGRCRAVALGVAKKGV  +G G
Sbjct:  702 MNEHSSRSHCIVSLRVRGENLH-DKSLATVSKLHLIDLAGSERLSKTDATGDRLKEAQNINKSLSALGDVINALGSKNKAHIPYRNSKLTFLLQDSLGGNSKVLMFVNISPASYNVSETVCSLQFAGRCRAVALGVAKKGVADNGAG 847
[Close]
BLAST of NO08G03070 vs. NCBI_GenBank
Match: CBN74697.1 (kinesin motor protein-related [Ectocarpus siliculosus])

HSP 1 Score: 188.3 bits (477), Expect = 2.500e-44
Identity = 100/139 (71.94%), Postives = 116/139 (83.45%), Query Frame = 0 
Query:    1 MNEHSSRSHSIVSVRVRGESLQGDRSLATVSKLHLIDLAGSERLSKTDATGDRLKEAQNINKSLSALGDVINALGSKNKAHVPFRNSKLTFLLQDSLGGNSKVLMFVNISPASYNVSETVCSLQFAGRCRAVALGVAKK 140
            MNEHSSRSH I +VRV G ++         +KL+LIDLAGSER+SKTDATGDRL+EAQNIN+SLSALGDVI ALG+  K HVPFRNSKLTF+LQD+L GNSKV+MFVN+SPASYNV+ET+CSL FA RCR+V LG A K
Sbjct:  751 MNEHSSRSHMIFNVRVEGTNVH--TGTVAKAKLNLIDLAGSERISKTDATGDRLREAQNINRSLSALGDVIAALGT-GKGHVPFRNSKLTFVLQDALSGNSKVMMFVNVSPASYNVTETLCSLNFAKRCRSVKLGQANK 886
[Close]
BLAST of NO08G03070 vs. NCBI_GenBank
Match: ETI52901.1 (hypothetical protein F443_04060 [Phytophthora parasitica P1569])

HSP 1 Score: 184.1 bits (466), Expect = 4.700e-43
Identity = 99/146 (67.81%), Postives = 115/146 (78.77%), Query Frame = 0 
Query:    2 NEHSSRSHSIVSVRVRGESLQGDRSLATVSKLHLIDLAGSERLSKTDATGDRLKEAQNINKSLSALGDVINALGSKNKAHVPFRNSKLTFLLQDSLGGNSKVLMFVNISPASYNVSETVCSLQFAGRCRAVALGVAKKGVVGSGPG 148
            NEHSSRSH ++S+ +   +    R    +SKLHLIDLAGSER+SKT A+G RLKEAQNIN+SLSALGDVI ALG+ +K HVP+RNSKLTFLLQDSL GNSKVLMFVN+SP  +N  ET+CSL FA RCR+VALG AK     SGPG
Sbjct:  921 NEHSSRSHLVLSITIETGTKSDAR--RRISKLHLIDLAGSERVSKTAASGQRLKEAQNINRSLSALGDVIAALGANSK-HVPYRNSKLTFLLQDSLSGNSKVLMFVNVSPVQWNAWETLCSLNFASRCRSVALGQAKASTASSGPG 1063
[Close]
BLAST of NO08G03070 vs. NCBI_GenBank
Match: ETK92761.1 (hypothetical protein L915_03942 [Phytophthora parasitica])

HSP 1 Score: 184.1 bits (466), Expect = 4.700e-43
Identity = 99/146 (67.81%), Postives = 115/146 (78.77%), Query Frame = 0 
Query:    2 NEHSSRSHSIVSVRVRGESLQGDRSLATVSKLHLIDLAGSERLSKTDATGDRLKEAQNINKSLSALGDVINALGSKNKAHVPFRNSKLTFLLQDSLGGNSKVLMFVNISPASYNVSETVCSLQFAGRCRAVALGVAKKGVVGSGPG 148
            NEHSSRSH ++S+ +   +    R    +SKLHLIDLAGSER+SKT A+G RLKEAQNIN+SLSALGDVI ALG+ +K HVP+RNSKLTFLLQDSL GNSKVLMFVN+SP  +N  ET+CSL FA RCR+VALG AK     SGPG
Sbjct:  921 NEHSSRSHLVLSITIETGTKSDAR--RRISKLHLIDLAGSERVSKTAASGQRLKEAQNINRSLSALGDVIAALGANSK-HVPYRNSKLTFLLQDSLSGNSKVLMFVNVSPVQWNAWETLCSLNFASRCRSVALGQAKASTASSGPG 1063
[Close]
BLAST of NO08G03070 vs. NCBI_GenBank
Match: ETL46177.1 (hypothetical protein L916_03885 [Phytophthora parasitica])

HSP 1 Score: 184.1 bits (466), Expect = 4.700e-43
Identity = 99/146 (67.81%), Postives = 115/146 (78.77%), Query Frame = 0 
Query:    2 NEHSSRSHSIVSVRVRGESLQGDRSLATVSKLHLIDLAGSERLSKTDATGDRLKEAQNINKSLSALGDVINALGSKNKAHVPFRNSKLTFLLQDSLGGNSKVLMFVNISPASYNVSETVCSLQFAGRCRAVALGVAKKGVVGSGPG 148
            NEHSSRSH ++S+ +   +    R    +SKLHLIDLAGSER+SKT A+G RLKEAQNIN+SLSALGDVI ALG+ +K HVP+RNSKLTFLLQDSL GNSKVLMFVN+SP  +N  ET+CSL FA RCR+VALG AK     SGPG
Sbjct:  921 NEHSSRSHLVLSITIETGTKSDAR--RRISKLHLIDLAGSERVSKTAASGQRLKEAQNINRSLSALGDVIAALGANSK-HVPYRNSKLTFLLQDSLSGNSKVLMFVNVSPVQWNAWETLCSLNFASRCRSVALGQAKASTASSGPG 1063
[Close]
BLAST of NO08G03070 vs. NCBI_GenBank
Match: ETL99322.1 (hypothetical protein L917_03800 [Phytophthora parasitica])

HSP 1 Score: 184.1 bits (466), Expect = 4.700e-43
Identity = 99/146 (67.81%), Postives = 115/146 (78.77%), Query Frame = 0 
Query:    2 NEHSSRSHSIVSVRVRGESLQGDRSLATVSKLHLIDLAGSERLSKTDATGDRLKEAQNINKSLSALGDVINALGSKNKAHVPFRNSKLTFLLQDSLGGNSKVLMFVNISPASYNVSETVCSLQFAGRCRAVALGVAKKGVVGSGPG 148
            NEHSSRSH ++S+ +   +    R    +SKLHLIDLAGSER+SKT A+G RLKEAQNIN+SLSALGDVI ALG+ +K HVP+RNSKLTFLLQDSL GNSKVLMFVN+SP  +N  ET+CSL FA RCR+VALG AK     SGPG
Sbjct:  921 NEHSSRSHLVLSITIETGTKSDAR--RRISKLHLIDLAGSERVSKTAASGQRLKEAQNINRSLSALGDVIAALGANSK-HVPYRNSKLTFLLQDSLSGNSKVLMFVNVSPVQWNAWETLCSLNFASRCRSVALGQAKASTASSGPG 1063
[Close]
BLAST of NO08G03070 vs. NCBI_GenBank
Match: ETM52466.1 (hypothetical protein L914_03904 [Phytophthora parasitica])

HSP 1 Score: 184.1 bits (466), Expect = 4.700e-43
Identity = 99/146 (67.81%), Postives = 115/146 (78.77%), Query Frame = 0 
Query:    2 NEHSSRSHSIVSVRVRGESLQGDRSLATVSKLHLIDLAGSERLSKTDATGDRLKEAQNINKSLSALGDVINALGSKNKAHVPFRNSKLTFLLQDSLGGNSKVLMFVNISPASYNVSETVCSLQFAGRCRAVALGVAKKGVVGSGPG 148
            NEHSSRSH ++S+ +   +    R    +SKLHLIDLAGSER+SKT A+G RLKEAQNIN+SLSALGDVI ALG+ +K HVP+RNSKLTFLLQDSL GNSKVLMFVN+SP  +N  ET+CSL FA RCR+VALG AK     SGPG
Sbjct:  921 NEHSSRSHLVLSITIETGTKSDAR--RRISKLHLIDLAGSERVSKTAASGQRLKEAQNINRSLSALGDVIAALGANSK-HVPYRNSKLTFLLQDSLSGNSKVLMFVNVSPVQWNAWETLCSLNFASRCRSVALGQAKASTASSGPG 1063
[Close]
BLAST of NO08G03070 vs. NCBI_GenBank
Match: XP_008901267.1 (hypothetical protein PPTG_08102 [Phytophthora parasitica INRA-310] >ETN13194.1 hypothetical protein PPTG_08102 [Phytophthora parasitica INRA-310])

HSP 1 Score: 184.1 bits (466), Expect = 4.700e-43
Identity = 99/146 (67.81%), Postives = 115/146 (78.77%), Query Frame = 0 
Query:    2 NEHSSRSHSIVSVRVRGESLQGDRSLATVSKLHLIDLAGSERLSKTDATGDRLKEAQNINKSLSALGDVINALGSKNKAHVPFRNSKLTFLLQDSLGGNSKVLMFVNISPASYNVSETVCSLQFAGRCRAVALGVAKKGVVGSGPG 148
            NEHSSRSH ++S+ +   +    R    +SKLHLIDLAGSER+SKT A+G RLKEAQNIN+SLSALGDVI ALG+ +K HVP+RNSKLTFLLQDSL GNSKVLMFVN+SP  +N  ET+CSL FA RCR+VALG AK     SGPG
Sbjct:  921 NEHSSRSHLVLSITIETGTKSDAR--RRISKLHLIDLAGSERVSKTAASGQRLKEAQNINRSLSALGDVIAALGANSK-HVPYRNSKLTFLLQDSLSGNSKVLMFVNVSPVQWNAWETLCSLNFASRCRSVALGQAKASTASSGPG 1063
[Close]
BLAST of NO08G03070 vs. NCBI_GenBank
Match: ETO81604.1 (hypothetical protein F444_04115 [Phytophthora parasitica P1976])

HSP 1 Score: 184.1 bits (466), Expect = 4.700e-43
Identity = 99/146 (67.81%), Postives = 115/146 (78.77%), Query Frame = 0 
Query:    2 NEHSSRSHSIVSVRVRGESLQGDRSLATVSKLHLIDLAGSERLSKTDATGDRLKEAQNINKSLSALGDVINALGSKNKAHVPFRNSKLTFLLQDSLGGNSKVLMFVNISPASYNVSETVCSLQFAGRCRAVALGVAKKGVVGSGPG 148
            NEHSSRSH ++S+ +   +    R    +SKLHLIDLAGSER+SKT A+G RLKEAQNIN+SLSALGDVI ALG+ +K HVP+RNSKLTFLLQDSL GNSKVLMFVN+SP  +N  ET+CSL FA RCR+VALG AK     SGPG
Sbjct:  921 NEHSSRSHLVLSITIETGTKSDAR--RRISKLHLIDLAGSERVSKTAASGQRLKEAQNINRSLSALGDVIAALGANSK-HVPYRNSKLTFLLQDSLSGNSKVLMFVNVSPVQWNAWETLCSLNFASRCRSVALGQAKASTASSGPG 1063
[Close]
BLAST of NO08G03070 vs. NCBI_GenBank
Match: ETP22710.1 (hypothetical protein F441_04039 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 184.1 bits (466), Expect = 4.700e-43
Identity = 99/146 (67.81%), Postives = 115/146 (78.77%), Query Frame = 0 
Query:    2 NEHSSRSHSIVSVRVRGESLQGDRSLATVSKLHLIDLAGSERLSKTDATGDRLKEAQNINKSLSALGDVINALGSKNKAHVPFRNSKLTFLLQDSLGGNSKVLMFVNISPASYNVSETVCSLQFAGRCRAVALGVAKKGVVGSGPG 148
            NEHSSRSH ++S+ +   +    R    +SKLHLIDLAGSER+SKT A+G RLKEAQNIN+SLSALGDVI ALG+ +K HVP+RNSKLTFLLQDSL GNSKVLMFVN+SP  +N  ET+CSL FA RCR+VALG AK     SGPG
Sbjct:  921 NEHSSRSHLVLSITIETGTKSDAR--RRISKLHLIDLAGSERVSKTAASGQRLKEAQNINRSLSALGDVIAALGANSK-HVPYRNSKLTFLLQDSLSGNSKVLMFVNVSPVQWNAWETLCSLNFASRCRSVALGQAKASTASSGPG 1063
The following BLAST results are available for this feature:
BLAST of NO08G03070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26774.11.300e-6491.84di-glucose binding, kinesin motor domain containin... [more]
CBN74697.12.500e-4471.94kinesin motor protein-related [Ectocarpus siliculo... [more]
ETI52901.14.700e-4367.81hypothetical protein F443_04060 [Phytophthora para... [more]
ETK92761.14.700e-4367.81hypothetical protein L915_03942 [Phytophthora para... [more]
ETL46177.14.700e-4367.81hypothetical protein L916_03885 [Phytophthora para... [more]
ETL99322.14.700e-4367.81hypothetical protein L917_03800 [Phytophthora para... [more]
ETM52466.14.700e-4367.81hypothetical protein L914_03904 [Phytophthora para... [more]
XP_008901267.14.700e-4367.81hypothetical protein PPTG_08102 [Phytophthora para... [more]
ETO81604.14.700e-4367.81hypothetical protein F444_04115 [Phytophthora para... [more]
ETP22710.14.700e-4367.81hypothetical protein F441_04039 [Phytophthora para... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008722NSK008722Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03070.1NO08G03070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525821gene_3637Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g216gene3763Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03070.1NO08G03070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03070 ID=NO08G03070|Name=NO08G03070|organism=Nannochloropsis oceanica|type=gene|length=1013bp
ATGAACGAGCACTCGAGCCGCAGCCATTCGATCGTGAGTGTGCGGGTGCG
GGGAGAGAGCCTGCAGGGGGACCGGTCCCTGGCCACGGTGAGCAAGCTGC
ATTTGATTGACTTGGCGGGGTCGGAAAGATTGTCCAAGgtagggagggag
gaaagaagggaaggaagatagacgggagggaaggaggcagccattttccc
ttgttttcttacttgaaaactgattcaccctccttccctccctcctttcc
ccccttccccctttccccgcccgcacaaaagACTGATGCCACGGGCGATC
GGCTCAAGGAAGCTCAGAACATCAACAAGTCGCTCTCCGCCCTCGGCGAT
GTGATCAACGCACTGGGCAGCAAGAACAAGGCTCACGTCCCCTTTCGGAA
CAGTAAGCTGACATTCCTCCTTCAGGACTCGCTGGGTGGAAACAGCAAGg
tgagggcaggaaggaggaagggatggagctaggaagggggggataggaac
gagtagcgtggacgtatcattcatttcttctctcagccggacatttttga
taggggcaatactgaagcgtattgtcaaacgctccttccaatcatcgtcc
ttctttcacctcatccccccatttcacaccacttcttccactttgtgcag
GTCTTAATGTTTGTCAACATCTCCCCCGCCTCTTATAACGTAAGTGAGAC
GGTCTGTTCCCTTCAATTCGCTGGCCGATGCCGCGCCGTCGCTCTAGGCG
TGGCCAAGAAGGGGGTGGTCGGTAGTGGACCAGGAGGAGGGGAAGGAGGG
GAGGGGGAGGTGGGACGGCGGAAGGGGGAGGGGGAGCAGCTGACTGTGGA
CCTGAGGAGTGCCCGTGGAGGGGAGGGGGGAGAGGAGTTAGGAGGAGAGG
GAGGAAGAGAACAGAGAAGGGTGAAGACCCCGCCGCCGCCGGCATCTGTA
GCTAGTGGGAGGGTCTCGCCTCCACCGCGGCGGAGCAGTTTGGGGAATGC
TTCATCTAGATAG
back to top

protein sequence of NO08G03070.1

>NO08G03070.1-protein ID=NO08G03070.1-protein|Name=NO08G03070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=223bp
MNEHSSRSHSIVSVRVRGESLQGDRSLATVSKLHLIDLAGSERLSKTDAT
GDRLKEAQNINKSLSALGDVINALGSKNKAHVPFRNSKLTFLLQDSLGGN
SKVLMFVNISPASYNVSETVCSLQFAGRCRAVALGVAKKGVVGSGPGGGE
GGEGEVGRRKGEGEQLTVDLRSARGGEGGEELGGEGGREQRRVKTPPPPA
SVASGRVSPPPRRSSLGNASSR*
back to top
Synonyms
Publications