NO08G03050, NO08G03050 (gene) Nannochloropsis oceanica

Overview
NameNO08G03050
Unique NameNO08G03050
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2157
Alignment locationchr8:847936..850092 +

Link to JBrowse

Properties
Property NameValue
DescriptionType ii inositol--trisphosphate 5-phosphatase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:847936..850092 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0046856phosphatidylinositol dephosphorylation
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO08G03050 vs. NCBI_GenBank
Match: EWM26700.1 (type ii inositol- -trisphosphate 5-phosphatase [Nannochloropsis gaditana])

HSP 1 Score: 443.4 bits (1139), Expect = 1.100e-120
Identity = 297/695 (42.73%), Postives = 358/695 (51.51%), Query Frame = 0
Query:   11 ANNKELWVSRVVCAVGAVAGLAIIPVALTSRRRVFQKRTDLASDDVMLLFEKLLMLKGGLDGILCLIWLTGLLVSGDS--------------------------HPFQFLLKKEDMTHTNQYFMRSVFAALVVATVVCVPIAALSEFGRSGTLCWLASVALKFFSFLSLVILMWFICLLVIFRMARVTRHRYAGRSLKVYHGSFFRRLTDGMVVHLVIIAAVVVIYGYVFRVAFRTYIWRFGRESVAFSFMEMITIAFRGPVDAIGYSPEDWLVRLNRFVCNGC--RRRNASGGLPHSKSSMA------------------------------------------VASGPSV----------------------EPLGEDILAHLGGPEKYVMCRRAIGSTNRALGYLGFIALLVLARREEVRANRFLLHESKTSALARGKNLGVTVAQNKGGVGLAF------------------------------------------------------------------RRTNAGEFLEDVAGICRVERDEVCGGEKEWRRKRYAALF-------GPREGVVAGEVKKEVEVKEEEDSESVVPLDTKQVEVEGGKDGXXXXXXXXTQRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSSPRFHGVQGLVRQVKSYLSEPSHIEMNRLTMQRLTSSYV 541
            +  +EL+ SRV+CA GA+AGLAIIPVA+T+R RVFQKR DLA++ V  LFE  L+LK  LDG LCLI L GL V GDS                          HPF F+L+K DMT T +YF RS+   ++V+T VC+P+AA  EFGRSG+LCWL SV+ +F++F +LV   W + ++VI R+ARVT+HR+A R L VYHG+FFRRL+DGMV  LV I   V++YGYVFRV  R YIWR G ES   S MEM+TIAFRGPVDAI YSP+DW+VRL RF  + C  ++R A        +S A                                           A GP                          LGED+LAHLGGPEKYVM RRAIGST ++LGY G IALLVLAR EEV+ANRFLLHESK SA+ARGKNLGVT AQNKGGVGLAF                                                                  RRT+  + LEDVA ICR ERD +CGG++EWRR RYA L        GP EG      +KE +     DSE    +D   V   GG +G         +                                       GV  LVRQVK YL EPS+ EM +LTM+RL SSY+
Sbjct:   11 STEEELYTSRVICATGAIAGLAIIPVAITARHRVFQKRVDLANESVARLFENFLLLKAILDGCLCLILLGGLFVRGDSIGCSFLGFFFQLEEVMTLALIMRMVMHPFHFMLRKRDMTDTKEYFNRSILVCVLVSTFVCIPLAASREFGRSGSLCWLTSVSTQFYAFFTLVFFTWIVSMIVIVRLARVTQHRHAVRLLTVYHGNFFRRLSDGMVTRLVFIGVAVILYGYVFRVLARAYIWRNGAESPFLSGMEMLTIAFRGPVDAIFYSPKDWVVRLARFYRHFCLGQKRGAKRRTSMDLASAAEPVRLTLIGKAYPLPFFTDPPVPSFQDKQLFISTYNLGECKSKALGPEALAAWIPRDRDVYVLGLQECMVYRRLGEDVLAHLGGPEKYVMYRRAIGSTYQSLGYHGLIALLVLARTEEVQANRFLLHESKNSAVARGKNLGVTTAQNKGGVGLAFRYYDTTFALLACHLSSDLKGRSRLDKRNQDAWQLTYETNLWREEYLLDVHHQHHVCIFLGDVNYRLRRTDPEKVLEDVASICRRERDVLCGGQEEWRRDRYALLLAPGNGGPGPGEGTPLEGGRKEKD-DGVRDSEPCGGVDEPGVLESGGDEGEQQEPELLEE----------------------DPVDEEAEEVCCEQERQGVSSLVRQVKEYL-EPSNTEMAKLTMKRLASSYL 681          
BLAST of NO08G03050 vs. NCBI_GenBank
Match: XP_005856074.1 (phosphatidylinositol- -trisphosphate 5-phosphatase 1, partial [Nannochloropsis gaditana CCMP526] >EKU20284.1 phosphatidylinositol- -trisphosphate 5-phosphatase 1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 247.3 bits (630), Expect = 1.100e-61
Identity = 149/286 (52.10%), Postives = 171/286 (59.79%), Query Frame = 0
Query:  158 WFICLLVIFRMARVTRHRYAGRSLKVYHGSFFRRLTDGMVVHLVIIAAVVVIYGYVFRVAFRTYIWRFGRESVAFSFMEMITIAFRGPVDAIGYSPEDWLVRLNRFVCNGC--RRRNASGGLPHSKSSMA------------------------------------------VASGPSV----------------------EPLGEDILAHLGGPEKYVMCRRAIGSTNRALGYLGFIALLVLARREEVRANRFLLHESKTSALARGKNLGVTVAQNKGGVGLAFR 378
            W + ++VI R+ARVT+HR+A R L VYHG+FFRRL+DGMV  LV I   V++YGYVFRV  R YIWR G ES   S MEM+TIAFRGPVDAI YSP+DW+VRL RF  + C  ++R A        +S A                                           A GP                          LGED+LAHLGGPEKYVM RRAIGST ++LGY G IALLVLAR EEV+ANRFLLHESK SA+ARGKNLGVT AQNKGGVGLAFR
Sbjct:    2 WIVSMIVIVRLARVTQHRHAVRLLTVYHGNFFRRLSDGMVTRLVFIGVAVILYGYVFRVLARAYIWRNGAESPFLSGMEMLTIAFRGPVDAIFYSPKDWVVRLARFYRHFCLGQKRGAKRRTSMDLASAAEPVRLTLIGKAYPLPFFTDPPVPSFQDKQLFISTYNLGECKSKALGPEALAAWIPRDRDVYVLGLQECMVYRRLGEDVLAHLGGPEKYVMYRRAIGSTYQSLGYHGLIALLVLARTEEVQANRFLLHESKNSAVARGKNLGVTTAQNKGGVGLAFR 287          
The following BLAST results are available for this feature:
BLAST of NO08G03050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM26700.11.100e-12042.73type ii inositol- -trisphosphate 5-phosphatase [Na... [more]
XP_005856074.11.100e-6152.10phosphatidylinositol- -trisphosphate 5-phosphatase... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008724NSK008724Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03050.1NO08G03050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|663325gene_3635Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g215gene3764Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03050.1NO08G03050.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03050 ID=NO08G03050|Name=NO08G03050|organism=Nannochloropsis oceanica|type=gene|length=2157bp
ATGGAAGACAATGCAGGGGCAAGCTTAGGCGCCAACAATAAAGAGTTGTG
GGTGTCCCGCGTGGTGTGCGCTGTTGGCGCCGTGGCAGGCCTTGCCATCA
TCCCCGTGGCCCTTACTTCCCGTCGCCGTGTCTTTCAAAAGCGCACAGAC
CTTGCAAGCGATGACGTGATGTTGCTGTTTGAGAAATTACTGATGTTGAA
AGGCGGATTGGACGGGATCCTATGTCTCATTTGGCTGACCGGTCTGCTCG
TGTCGGGCGATTCGgtaggctgtaaagtccttggctttctgtaccagttt
gaaaaatatgtacgctcgtcctgttgattcggttcgcccagCATCCGTTT
CAGTTCCTTTTGAAAAAGGAGGACATGACCCACACGAATCAATACTTTAT
GAGAAGTGTCTTCGCCGCTCTCGTGGTAGCCACCGTCGTATGCGTTCCAA
TAGCGGCCTTGAGTGAATTTGGGAGAAGTGGGACGCTGTGTTGGTTGGCC
TCGGTGGCCCTGAAATTCTTTTCATTTTTATCCCTGGTCATTTTGATGTG
GTTTATCTGCCTGTTGGTCATTTTCCGCATGGCTCGCGTCACGCGCCATC
GATATGCTGGGCGCTCGCTCAAAGTCTACCACGGTAGTTTCTTTCGGCGC
CTCACGGATGGGATGGTCGTGCACTTGGTGATCATTGCTGCGGTGGTCGT
TATCTACGGGTACGTCTTCCGCGTGGCCTTTCGTACGTACATCTGGAGGT
TTGGGAGAGAATCGGTCGCGTTTTCATTCATGGAAATGATTACCATAGCT
TTTCGCGGGCCCGTGGACGCGATCGGCTACTCCCCCGAGGACTGGCTTGT
CCGCTTGAACCGCTTTGTGTGCAACGGATGTCGACGACGGAATGCATCCG
GTGGTTTGCCTCACTCGAAGTCGTCCATGGCTGTGGCTTCCGGCCCAAGC
GTCGAGCCCgtccgtctcagcttgatgggaaaagcgtaccccttcctttt
ttcaccgacccccccgttcctcagaaggaagaccgacacttgtttattat
tacttacaaaatggctgaatgtgatagcaaggctttggggcctaaggagt
ttgcgggatggattccacgcgatagggatgtgtatgtactggtggtgtag
gagtgcatgatttatcagcagCTAGGGGAGGACATTTTGGCTCACTTGGG
GGGGCCTGAGAAGTACGTGATGTGTCGCCGAGCGATAGGGTCGACAAATC
GCGCGTTAGGGTACCTTGGATTTATTGCTTTGCTGGTATTGGCGAGAAGG
GAGGAGGTACGGGCGAACCGTTTCTTGCTGCACGAGAGTAAGACGAGCGC
GCTGGCGCGTGGGAAGAATTTGGGGGTGACTGTCGCGCAAAACAAGGGAG
GCGTGGGATTGGCTTTCAGgtattacgacactacgtttgctttgcttgcg
tgtcatttatcgtcggatttgaagggtcgttccaggctgaagaggaggaa
tcaggacgcgtggcggttgacgtacgagacgaatttgtggagggaagatt
atttgctcgatgtccaccaccagcaccacgtgtgtttgtttttggggatt
tgaattatcgactaagGAGAACGAATGCAGGGGAGTTCTTGGAAGATGTA
GCAGGGATTTGTAGGGTGGAAAGGGATGAGGTATGTGGAGGGGAGAAGGA
ATGGAGGAGGAAGAGGTATGCAGCGTTGTTTGGGCCGAGGGAGGGAGTGG
TGGCTGGGGAGGTAAAGAAGGAGGTGGAAGTGAAGGAAGAGGAGGACAGT
GAAAGTGTGGTTCCACTTGACACCAAGCAGGTAGAGGTGGAGGGCGGTAA
GGATGGGGAAGGAGAGAATGGGAGCGGGGAAACCCAACGTGACGCGGAGG
AGGATATGGGAGACGACGACGAGGACGACGAGGAAGAGGAAGAGGACGAG
AAGGACGACGATGAGGATGACGAAGGTGGTAGCTACAGCAGTCCCCGCTT
CCACGGCGTGCAAGGGCTGGTGCGACAAGTCAAAAGCTACTTGTCCGAGC
CCTCCCACATCGAAATGAACAGGTTGACAATGCAGCGATTGACATCTTCT
TACGTCTGGAGAATAAAAACGGCGGGGATGCCACCGAGGATGAGGAAGAC
GACCTAA
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protein sequence of NO08G03050.1

>NO08G03050.1-protein ID=NO08G03050.1-protein|Name=NO08G03050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=557bp
MEDNAGASLGANNKELWVSRVVCAVGAVAGLAIIPVALTSRRRVFQKRTD
LASDDVMLLFEKLLMLKGGLDGILCLIWLTGLLVSGDSHPFQFLLKKEDM
THTNQYFMRSVFAALVVATVVCVPIAALSEFGRSGTLCWLASVALKFFSF
LSLVILMWFICLLVIFRMARVTRHRYAGRSLKVYHGSFFRRLTDGMVVHL
VIIAAVVVIYGYVFRVAFRTYIWRFGRESVAFSFMEMITIAFRGPVDAIG
YSPEDWLVRLNRFVCNGCRRRNASGGLPHSKSSMAVASGPSVEPLGEDIL
AHLGGPEKYVMCRRAIGSTNRALGYLGFIALLVLARREEVRANRFLLHES
KTSALARGKNLGVTVAQNKGGVGLAFRRTNAGEFLEDVAGICRVERDEVC
GGEKEWRRKRYAALFGPREGVVAGEVKKEVEVKEEEDSESVVPLDTKQVE
VEGGKDGEGENGSGETQRDAEEDMGDDDEDDEEEEEDEKDDDEDDEGGSY
SSPRFHGVQGLVRQVKSYLSEPSHIEMNRLTMQRLTSSYVWRIKTAGMPP
RMRKTT*
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Synonyms
Publications