NO08G03000, NO08G03000 (gene) Nannochloropsis oceanica

Overview
NameNO08G03000
Unique NameNO08G03000
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1237
Alignment locationchr8:835492..836728 -

Link to JBrowse

Properties
Property NameValue
DescriptionPeptidylprolyl isomerase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:835492..836728 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR036034PDZ_sf
IPR023566PPIase_FKBP
IPR001179PPIase_FKBP_dom
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Homology
BLAST of NO08G03000 vs. NCBI_GenBank
Match: CEM11063.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 112.5 bits (280), Expect = 2.700e-21
Identity = 77/236 (32.63%), Postives = 120/236 (50.85%), Query Frame = 0
Query:  101 PLGLALEDFGNRDGKYRTYVSKTLRGSQATGK-GIRIPALVVAVNGQNVEGLPRKMVAQLIRDTIEGRNGMGKGGVVTVTFRDPSKFMELLNDKTAAPGDEITTQLAPQTKARDAQTLAVKKTFVPEICQTGAMYGDLLEVKYTTSLADGTFLDAT---GVSTPGRGGDSTVYFVLGEQVAGTVPKGWDLALVGACVGEQRVIRTPSVLAYGNKGLKRRGIPPDATIIYNVEVIGI 333
            PLG+ LE+           V + + GS+A     IR   L+ +VNGQ+V+GL    V  LIR   E     G+ G + + FR         +  +    D I        KA+    + + +  +PE+C   A  GDLLE++Y   L DG  +D++   G S PG+G  S++Y +LG++    + + +   L   C GE+R I  P   A+G++GL  + IPPDAT+IY+VE++ I
Sbjct:  151 PLGIELEETAE-----GIKVKQLVAGSEAANNPDIRPGLLLESVNGQSVQGLRLSDVKSLIRMRREMGEKEGE-GTLRLAFRGEGGGRGERDAVSQGVADTI-------DKAKREGQVIIDRRKIPEVCSLKAKRGDLLELRYVGRLEDGKLIDSSRLDGRSVPGKGAGSSIYLLLGDKPPRKLIRKFQSGLYSMCEGEKRRITIPPSAAFGSEGLPEKAIPPDATLIYDVELVKI 373          
BLAST of NO08G03000 vs. NCBI_GenBank
Match: XP_005765893.1 (hypothetical protein EMIHUDRAFT_66770, partial [Emiliania huxleyi CCMP1516] >EOD13464.1 hypothetical protein EMIHUDRAFT_66770, partial [Emiliania huxleyi CCMP1516])

HSP 1 Score: 110.9 bits (276), Expect = 7.700e-21
Identity = 54/111 (48.65%), Postives = 67/111 (60.36%), Query Frame = 0
Query:  225 PEICQTGAMYGDLLEVKYTTSLA-DGTFLDATGVSTPGRGGDSTVYFVLGEQVAGTVPKGWDLALVGACVGEQRVIRTPSVLAYGNKGLKRRGIPPDATIIYNVEVIGING 335
            P  C+  A  GDL+E+ Y   LA  G   D  G+    R GD T+ FVLG Q AG  P  WD+ LVG C+GEQR +  P  L YG KGL +RG+PPDA + Y VE++ ING
Sbjct:    3 PRGCRRPAADGDLIEIGYEGRLAGSGALFD--GMELAKRQGDETIQFVLGRQPAGQFPPSWDVGLVGMCIGEQRTLEVPPTLGYGAKGLPKRGVPPDAALTYRVELVAING 111          
BLAST of NO08G03000 vs. NCBI_GenBank
Match: CBN75288.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 94.4 bits (233), Expect = 7.500e-16
Identity = 93/293 (31.74%), Postives = 125/293 (42.66%), Query Frame = 0
Query:   87 VGNDEYDVTFDVKQPLGLALEDFG-NRDGKYRTYVSKTLRGSQATGK-GIRIPALVVAVNGQNVEGLPRKMVAQLIRDTIEGRNGMGKGGVVTVTFRDPSKFMELLNDKTAAPGDE-------------------------------ITTQLAPQT--------KARDAQTLAVKKTFVPEICQTGAMYGDLLEVKYTTSLADGTFLDATGVSTPGRGGDSTVYFVLGEQVAGTVPKGWDLALVGACVGEQRVIRTPSVLAYGNKGLKRRGIPPD-----ATIIYNVEVIGIN 334
            V +DE  V F    P+G+ L D      G  R YV++ L GSQA  +  +R    V AV G+  E L  K VA+LIR  +  R        + + FRDP    ELL  +  A  D                                 TT + P++         A   +    +    PE+C T    GDL+E +Y+  LA    L     S+  RG       VLG    G V KG DL+L   CVGE+R I  P+ LAYG KG K  G+PPD     A +++ VE++ IN
Sbjct:  172 VQSDEVGVLFG-DGPIGIKLGDNPLKASGVCRVYVTEVLTGSQAIRQANLRAGFGVAAVGGKPAERLEPKEVAELIR--LSPR-------PMEIVFRDP----ELLGRRLQAEADRKAEAVKRRKQKAAADAXXXXXXXXXXXXXXXXTTAVDPRSGSVGNGGGSASSGELRVTQVGKKPEVCGTRTKAGDLIEFRYSARLASD--LSVEFDSSDRRGTGLPYAIVLGN---GDVVKGLDLSLFDMCVGERRKIEIPARLAYGRKGSKAFGVPPDDGTGSADVVFGVELVSIN 445          
BLAST of NO08G03000 vs. NCBI_GenBank
Match: EJK76227.1 (hypothetical protein THAOC_02024, partial [Thalassiosira oceanica])

HSP 1 Score: 94.0 bits (232), Expect = 9.800e-16
Identity = 44/92 (47.83%), Postives = 60/92 (65.22%), Query Frame = 0
Query:  248 DGTFLDATGVSTPGRGGDSTVYFVLGEQVAGTVPKGWDLALVGACVGEQRVIRTPSVLAYGNKGLKRRGIPPDATIIYNVEVIGINGNNLPR 340
            DG+ +   G   PGRG D +VYFVLG+Q  G  P GWD+ L G CVGE+R +  P VL +G +G  RR IPP+AT+ Y+V ++ +NG   P+
Sbjct:    7 DGSAVKINGNGIPGRGNDISVYFVLGKQPFGQFPPGWDVGLNGMCVGERRRLIIPPVLGFGAEGNPRRRIPPNATLQYDVTLVSLNGLATPQ 98          
BLAST of NO08G03000 vs. NCBI_GenBank
Match: GAQ84127.1 (FKBP-type peptidyl-prolyl cis-trans isomerase [Klebsormidium nitens])

HSP 1 Score: 86.7 bits (213), Expect = 1.600e-13
Identity = 52/134 (38.81%), Postives = 75/134 (55.97%), Query Frame = 0
Query:  201 ITTQLAPQTKARDAQTLAVKKTFVPEICQTGAMYGDLLEVKYTTSLADGTFLDATGVSTPGRGGDSTVYFVLGEQVAGTVPKGWDLALVGACVGEQRVIRTPSVLAYGNKGLKRRGIPPDATIIYNVEVIGING 335
            +T  ++ + K++D   L +   F PE+C   A  GD + V Y  SL DG+  DA    +  RG  +   F LG   AG V KGWD  + G C+GE+R +R PS L YG+ G   + IP  AT++++ E+I ING
Sbjct:   20 LTDVVSAKKKSKDVTELQIGVKFKPEVCSIKASKGDQVSVHYRGSLTDGSQFDA----SYDRG--APFDFKLG---AGQVIKGWDQGIAGMCIGEKRKLRIPSSLGYGDHGSPPK-IPGGATLVFDTELIAING 143          
BLAST of NO08G03000 vs. NCBI_GenBank
Match: PTQ47621.1 (hypothetical protein MARPO_0007s0072 [Marchantia polymorpha])

HSP 1 Score: 86.3 bits (212), Expect = 2.000e-13
Identity = 52/131 (39.69%), Postives = 75/131 (57.25%), Query Frame = 0
Query:  205 LAPQTKA-RDAQTLAVKKTFVPEICQTGAMYGDLLEVKYTTSLADGTFLDATGVSTPGRGGDSTVYFVLGEQVAGTVPKGWDLALVGACVGEQRVIRTPSVLAYGNKGLKRRGIPPDATIIYNVEVIGING 335
            LA Q KA ++ + L +   F P+ C   A  GD + V Y  +L DGT  D     + GRG    + F LG   AG V KGWD  L+G C+GE+R ++ PS L YG+ G   + IP  AT++++ E++G+NG
Sbjct:   24 LAVQAKADKEVKELQIGVKFKPKTCDVKAHKGDKVSVHYRGALTDGTVFD----ESYGRG--EPIDFELG---AGRVIKGWDQGLLGMCLGEKRKLKIPSKLGYGDNGSPPK-IPGGATLVFDTELVGVNG 144          
BLAST of NO08G03000 vs. NCBI_GenBank
Match: XP_018844175.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP15-1 [Juglans regia])

HSP 1 Score: 85.5 bits (210), Expect = 3.500e-13
Identity = 49/125 (39.20%), Postives = 69/125 (55.20%), Query Frame = 0
Query:  210 KARDAQTLAVKKTFVPEICQTGAMYGDLLEVKYTTSLADGTFLDATGVSTPGRGGDSTVYFVLGEQVAGTVPKGWDLALVGACVGEQRVIRTPSVLAYGNKGLKRRGIPPDATIIYNVEVIGING 335
            K++D   L +     P+ C   A  GD ++V Y  +L DGT  D++         DS + F LG    G V KGWD  L+GACVGE+R ++ PS L YG++G     IP  AT+I+  EV+ +NG
Sbjct:   28 KSKDVTELQIGVKHKPDSCDIQARKGDRIKVHYRGTLTDGTVFDSSFER------DSPIEFELG---TGQVIKGWDQGLLGACVGEKRKLKIPSKLGYGDQG-SPPTIPGGATLIFETEVVAVNG 142          
BLAST of NO08G03000 vs. NCBI_GenBank
Match: PSR94955.1 (Peptidyl-prolyl cis-trans isomerase [Actinidia chinensis var. chinensis])

HSP 1 Score: 85.5 bits (210), Expect = 3.500e-13
Identity = 51/134 (38.06%), Postives = 74/134 (55.22%), Query Frame = 0
Query:  201 ITTQLAPQTKARDAQTLAVKKTFVPEICQTGAMYGDLLEVKYTTSLADGTFLDATGVSTPGRGGDSTVYFVLGEQVAGTVPKGWDLALVGACVGEQRVIRTPSVLAYGNKGLKRRGIPPDATIIYNVEVIGING 335
            I T L    K++D   L +   + PE C+  A  GD ++V Y   L DGT  D    S+  RG    + F LG   +G V KGWD  L+G CVGE+R ++ P+ L YG +G  +  IP  AT+I++ E++ +NG
Sbjct:   20 ILTSLVSAKKSKDVTELQIGVKYKPESCEFQAHKGDRIKVHYRGKLTDGTVFD----SSFERG--DPIEFELG---SGQVIKGWDQGLLGMCVGEKRKLKIPAKLGYGEQG-SQPTIPGGATLIFDTELVAVNG 143          
BLAST of NO08G03000 vs. NCBI_GenBank
Match: EFJ27172.1 (hypothetical protein SELMODRAFT_96017, partial [Selaginella moellendorffii])

HSP 1 Score: 84.0 bits (206), Expect = 1.000e-12
Identity = 50/125 (40.00%), Postives = 71/125 (56.80%), Query Frame = 0
Query:  210 KARDAQTLAVKKTFVPEICQTGAMYGDLLEVKYTTSLADGTFLDATGVSTPGRGGDSTVYFVLGEQVAGTVPKGWDLALVGACVGEQRVIRTPSVLAYGNKGLKRRGIPPDATIIYNVEVIGING 335
            KA D + L +   F P  C+  A  GD ++V Y  SL DGT  D    S+  RG    + F LG+   G V +GWD  L+G CVGE+R ++ PS L YG++G   + IP  AT+I+  E++ +NG
Sbjct:    5 KASDVKELQIGVKFKPLTCEIRAHKGDEVKVHYKGSLTDGTVFD----SSYTRG--DPIGFTLGQ---GQVIQGWDQGLLGMCVGEKRKLKIPSKLGYGDQGQPPK-IPGGATLIFETELVSVNG 119          
BLAST of NO08G03000 vs. NCBI_GenBank
Match: PNH00607.1 (Peptidyl-prolyl cis-trans isomerase FKBP15-2 [Tetrabaena socialis])

HSP 1 Score: 84.0 bits (206), Expect = 1.000e-12
Identity = 50/123 (40.65%), Postives = 69/123 (56.10%), Query Frame = 0
Query:  210 KARDAQTLAVKKTFVPEICQTGAMYGDLLEVKYTTSLADGTFLDATGVSTPGRGGDSTVYFVLGEQVAGTVPKGWDLALVGACVGEQRVIRTPSVLAYGNKGLKRRGIPPDATIIYNVEVIGI 333
            K +D + L +   + PEIC      GD + V YT  L DGT  D    S+  RG   T  F LGE   G V KGWD  L+G CVGE+R ++ PS L YG+ G   + IP  AT++++VE++ +
Sbjct:   24 KTKDVKELRIGVKYKPEICDRTTRNGDTVHVHYTGMLTDGTKFD----SSLDRGTPFT--FALGE---GRVIKGWDQGLLGMCVGEKRKLQIPSSLGYGDSGSPPK-IPGGATLVFDVELVKV 136          
The following BLAST results are available for this feature:
BLAST of NO08G03000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CEM11063.12.700e-2132.63unnamed protein product [Vitrella brassicaformis C... [more]
XP_005765893.17.700e-2148.65hypothetical protein EMIHUDRAFT_66770, partial [Em... [more]
CBN75288.17.500e-1631.74conserved unknown protein [Ectocarpus siliculosus][more]
EJK76227.19.800e-1647.83hypothetical protein THAOC_02024, partial [Thalass... [more]
GAQ84127.11.600e-1338.81FKBP-type peptidyl-prolyl cis-trans isomerase [Kle... [more]
PTQ47621.12.000e-1339.69hypothetical protein MARPO_0007s0072 [Marchantia p... [more]
XP_018844175.13.500e-1339.20PREDICTED: peptidyl-prolyl cis-trans isomerase FKB... [more]
PSR94955.13.500e-1338.06Peptidyl-prolyl cis-trans isomerase [Actinidia chi... [more]
EFJ27172.11.000e-1240.00hypothetical protein SELMODRAFT_96017, partial [Se... [more]
PNH00607.11.000e-1240.65Peptidyl-prolyl cis-trans isomerase FKBP15-2 [Tetr... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008729NSK008729Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03000.1NO08G03000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582838gene_3631Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g208gene3769Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03000.1NO08G03000.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03000 ID=NO08G03000|Name=NO08G03000|organism=Nannochloropsis oceanica|type=gene|length=1237bp
ATGTGTCGCGGAGCCGCGACAACCTCCCCAACCCCCAAGCTGTCCCACCG
CCCCCTCCTCCTCATGCTCCTCCTCATCACTCTCACGCACGCCCTTGTCG
TCCAACTACCTACACTTCGCAATCGGCGCAACGCTTTGATGCGCATGACT
GTCGCGTCCTCCTCCAACGATCGCAAGGGCCACCTGCAATCACTGGCCTC
CATCCTGCTTGGCGCCGCTTTATCCAGCCCACCGCCATCCCTCCGACAAG
CACTTGCTGTGGGAAACGACGAGTACGACGTGACCTTTGATGTCAAGCAG
CCATTAGGCCTGGCACTCGAGGATTTTGGCAATCGCGACGGCAAGTATCG
CACTTATGTCAGTAAAACGCTCCGTGGGTCTCAAGCAACGGGCAAGGGAA
TCAGAATTCCCGCGTTGGTTGTGGCGGTAAATGGACAGAATGTTGAGGGA
CTACCCAGGAAAATGGTGGCGCAATTGATTCGAGACACGATTGAAGGACG
GAATGGGATGGGGAAAGGAGGGGTGGTGACCGTGACGTTTCGAGATCCGT
CCAAGTTCATGGAATTACTGgtaagtttgtgacttaagtgtttgtatgcg
agttagtgcttgaattttaaattccatttttctgtgcagtagtgtgatta
gttccctttttctggttgtccgagggctgctttcatctcggccaaaacca
ctcaagcacttacctcaacagatcccccattcccctcctccctccgttcc
ccttccctccctccctcccttcctcacctgacaacagAACGACAAAACAG
CCGCCCCCGGCGACGAAATCACCACGCAACTCGCCCCTCAAACCAAGGCG
CGGGACGCTCAAACCCTTGCGGTCAAGAAAACCTTCGTCCCCGAGATCTG
TCAGACAGGGGCCATGTATGGCGACTTGCTGGAAGTGAAGTACACGACCT
CTCTCGCGGATGGGACATTTTTGGACGCCACTGGTGTCAGCACCCCGGGA
AGAGGGGGCGATTCGACAGTTTATTTTGTGTTGGGTGAGCAAGTGGCGGG
AACGGTGCCAAAGGGGTGGGATCTGGCGTTGGTGGGCGCGTGCGTGGGGG
AGCAGAGGGTGATTCGAACGCCGAGTGTCCTGGCGTACGGGAATAAGGGC
CTCAAAAGACGAGGAATCCCCCCGGATGCGACAATAATTTACAATGTGGA
GGTGATTGGGATCAACGGGAATAATTTGCCCAGATAG
back to top

protein sequence of NO08G03000.1

>NO08G03000.1-protein ID=NO08G03000.1-protein|Name=NO08G03000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=340bp
MCRGAATTSPTPKLSHRPLLLMLLLITLTHALVVQLPTLRNRRNALMRMT
VASSSNDRKGHLQSLASILLGAALSSPPPSLRQALAVGNDEYDVTFDVKQ
PLGLALEDFGNRDGKYRTYVSKTLRGSQATGKGIRIPALVVAVNGQNVEG
LPRKMVAQLIRDTIEGRNGMGKGGVVTVTFRDPSKFMELLNDKTAAPGDE
ITTQLAPQTKARDAQTLAVKKTFVPEICQTGAMYGDLLEVKYTTSLADGT
FLDATGVSTPGRGGDSTVYFVLGEQVAGTVPKGWDLALVGACVGEQRVIR
TPSVLAYGNKGLKRRGIPPDATIIYNVEVIGINGNNLPR*
back to top
Synonyms
Publications