NO08G03000.1, NO08G03000.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03000.1
Unique NameNO08G03000.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1020
Alignment locationchr8:835492..836728 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:835492..836728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO08G03000.1 vs.
Match: EWM26709.1 (Peptidyl-prolyl cis-trans isomerase [Nannochloropsis gaditana])

HSP 1 Score: 434.1 bits (1115), Expect = 4.000e-118
Identity = 220/296 (74.32%), Postives = 252/296 (85.14%), Query Frame = 0 
Query:   47 MRMTVASSSNDRKGHLQSLASILLGAALSSPPPSLRQALAVGNDEYDVTFDVKQPLGLALEDFGNRDGKYRTYVSKTLRGSQATGKGIRIPALVVAVNGQNVEGLPRKMVAQLIRDTIEGRNGMGKGGVVTVTFRDPSKFMELLNDKTA---APGDEITTQLAPQTKARDAQTLAVKKTFVPEICQTGAMYGDLLEVKYTTSLADGTFLDATGVSTPGRGGDSTVYFVLGEQVAGTVPKGWDLALVGACVGEQRVIRTPSVLAYGNKGLKRRGIPPDATIIYNVEVIGINGNNLPR 340
            +R+ ++ S  DR+G L+  AS+ L   L       ++A AV +DEYDV FD KQPLGLALEDFG ++GKYRTYVSKTLRGSQAT KGIRIPALVVAVNG+NVEGLPRKMV QLIRD  EGRNGMG+G  + VTFRDP+KFMELL++K+      G EI+TQLAPQT+AR+AQTL VKKT+VPEICQTGA YGDLLE+KY T L DGTFLDATGVSTPGRGGDST+YFVLGEQVAGTVPKGWDLALVGACVGE+R I+TPSVLA+G KGLKR+GIPPDATI+Y+VEVIGINGNN+PR
Sbjct:   75 IRVVMSMSCPDRRGLLEGWASVFLAVGLPHVAQPTQRAHAVKDDEYDVAFDAKQPLGLALEDFG-QNGKYRTYVSKTLRGSQATSKGIRIPALVVAVNGKNVEGLPRKMVVQLIRDAQEGRNGMGEGSSLMVTFRDPAKFMELLSEKSTPGGGEGAEISTQLAPQTQAREAQTLTVKKTYVPEICQTGAKYGDLLEIKYATRLEDGTFLDATGVSTPGRGGDSTLYFVLGEQVAGTVPKGWDLALVGACVGEKRRIKTPSVLAFGAKGLKRKGIPPDATIVYDVEVIGINGNNIPR 369
The following BLAST results are available for this feature:
BLAST of NO08G03000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26709.14.000e-11874.32Peptidyl-prolyl cis-trans isomerase [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03000NO08G03000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03000.1NO08G03000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03000.1.cds1NO08G03000.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03000.1.cds2NO08G03000.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03000.1 ID=NO08G03000.1|Name=NO08G03000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1020bp
ATGTGTCGCGGAGCCGCGACAACCTCCCCAACCCCCAAGCTGTCCCACCG
CCCCCTCCTCCTCATGCTCCTCCTCATCACTCTCACGCACGCCCTTGTCG
TCCAACTACCTACACTTCGCAATCGGCGCAACGCTTTGATGCGCATGACT
GTCGCGTCCTCCTCCAACGATCGCAAGGGCCACCTGCAATCACTGGCCTC
CATCCTGCTTGGCGCCGCTTTATCCAGCCCACCGCCATCCCTCCGACAAG
CACTTGCTGTGGGAAACGACGAGTACGACGTGACCTTTGATGTCAAGCAG
CCATTAGGCCTGGCACTCGAGGATTTTGGCAATCGCGACGGCAAGTATCG
CACTTATGTCAGTAAAACGCTCCGTGGGTCTCAAGCAACGGGCAAGGGAA
TCAGAATTCCCGCGTTGGTTGTGGCGGTAAATGGACAGAATGTTGAGGGA
CTACCCAGGAAAATGGTGGCGCAATTGATTCGAGACACGATTGAAGGACG
GAATGGGATGGGGAAAGGAGGGGTGGTGACCGTGACGTTTCGAGATCCGT
CCAAGTTCATGGAATTACTGAACGACAAAACAGCCGCCCCCGGCGACGAA
ATCACCACGCAACTCGCCCCTCAAACCAAGGCGCGGGACGCTCAAACCCT
TGCGGTCAAGAAAACCTTCGTCCCCGAGATCTGTCAGACAGGGGCCATGT
ATGGCGACTTGCTGGAAGTGAAGTACACGACCTCTCTCGCGGATGGGACA
TTTTTGGACGCCACTGGTGTCAGCACCCCGGGAAGAGGGGGCGATTCGAC
AGTTTATTTTGTGTTGGGTGAGCAAGTGGCGGGAACGGTGCCAAAGGGGT
GGGATCTGGCGTTGGTGGGCGCGTGCGTGGGGGAGCAGAGGGTGATTCGA
ACGCCGAGTGTCCTGGCGTACGGGAATAAGGGCCTCAAAAGACGAGGAAT
CCCCCCGGATGCGACAATAATTTACAATGTGGAGGTGATTGGGATCAACG
GGAATAATTTGCCCAGATAG
back to top

protein sequence of NO08G03000.1

>NO08G03000.1-protein ID=NO08G03000.1-protein|Name=NO08G03000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=340bp
MCRGAATTSPTPKLSHRPLLLMLLLITLTHALVVQLPTLRNRRNALMRMT
VASSSNDRKGHLQSLASILLGAALSSPPPSLRQALAVGNDEYDVTFDVKQ
PLGLALEDFGNRDGKYRTYVSKTLRGSQATGKGIRIPALVVAVNGQNVEG
LPRKMVAQLIRDTIEGRNGMGKGGVVTVTFRDPSKFMELLNDKTAAPGDE
ITTQLAPQTKARDAQTLAVKKTFVPEICQTGAMYGDLLEVKYTTSLADGT
FLDATGVSTPGRGGDSTVYFVLGEQVAGTVPKGWDLALVGACVGEQRVIR
TPSVLAYGNKGLKRRGIPPDATIIYNVEVIGINGNNLPR*
back to top

mRNA from alignment at chr8:835492..836728-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03000.1 ID=NO08G03000.1|Name=NO08G03000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1237bp|location=Sequence derived from alignment at chr8:835492..836728- (Nannochloropsis oceanica)
ATGTGTCGCGGAGCCGCGACAACCTCCCCAACCCCCAAGCTGTCCCACCG
CCCCCTCCTCCTCATGCTCCTCCTCATCACTCTCACGCACGCCCTTGTCG
TCCAACTACCTACACTTCGCAATCGGCGCAACGCTTTGATGCGCATGACT
GTCGCGTCCTCCTCCAACGATCGCAAGGGCCACCTGCAATCACTGGCCTC
CATCCTGCTTGGCGCCGCTTTATCCAGCCCACCGCCATCCCTCCGACAAG
CACTTGCTGTGGGAAACGACGAGTACGACGTGACCTTTGATGTCAAGCAG
CCATTAGGCCTGGCACTCGAGGATTTTGGCAATCGCGACGGCAAGTATCG
CACTTATGTCAGTAAAACGCTCCGTGGGTCTCAAGCAACGGGCAAGGGAA
TCAGAATTCCCGCGTTGGTTGTGGCGGTAAATGGACAGAATGTTGAGGGA
CTACCCAGGAAAATGGTGGCGCAATTGATTCGAGACACGATTGAAGGACG
GAATGGGATGGGGAAAGGAGGGGTGGTGACCGTGACGTTTCGAGATCCGT
CCAAGTTCATGGAATTACTGGTAAGTTTGTGACTTAAGTGTTTGTATGCG
AGTTAGTGCTTGAATTTTAAATTCCATTTTTCTGTGCAGTAGTGTGATTA
GTTCCCTTTTTCTGGTTGTCCGAGGGCTGCTTTCATCTCGGCCAAAACCA
CTCAAGCACTTACCTCAACAGATCCCCCATTCCCCTCCTCCCTCCGTTCC
CCTTCCCTCCCTCCCTCCCTTCCTCACCTGACAACAGAACGACAAAACAG
CCGCCCCCGGCGACGAAATCACCACGCAACTCGCCCCTCAAACCAAGGCG
CGGGACGCTCAAACCCTTGCGGTCAAGAAAACCTTCGTCCCCGAGATCTG
TCAGACAGGGGCCATGTATGGCGACTTGCTGGAAGTGAAGTACACGACCT
CTCTCGCGGATGGGACATTTTTGGACGCCACTGGTGTCAGCACCCCGGGA
AGAGGGGGCGATTCGACAGTTTATTTTGTGTTGGGTGAGCAAGTGGCGGG
AACGGTGCCAAAGGGGTGGGATCTGGCGTTGGTGGGCGCGTGCGTGGGGG
AGCAGAGGGTGATTCGAACGCCGAGTGTCCTGGCGTACGGGAATAAGGGC
CTCAAAAGACGAGGAATCCCCCCGGATGCGACAATAATTTACAATGTGGA
GGTGATTGGGATCAACGGGAATAATTTGCCCAGATAG
back to top

Coding sequence (CDS) from alignment at chr8:835492..836728-

>NO08G03000.1 ID=NO08G03000.1|Name=NO08G03000.1|organism=Nannochloropsis oceanica|type=CDS|length=1020bp|location=Sequence derived from alignment at chr8:835492..836728- (Nannochloropsis oceanica)
ATGTGTCGCGGAGCCGCGACAACCTCCCCAACCCCCAAGCTGTCCCACCG
CCCCCTCCTCCTCATGCTCCTCCTCATCACTCTCACGCACGCCCTTGTCG
TCCAACTACCTACACTTCGCAATCGGCGCAACGCTTTGATGCGCATGACT
GTCGCGTCCTCCTCCAACGATCGCAAGGGCCACCTGCAATCACTGGCCTC
CATCCTGCTTGGCGCCGCTTTATCCAGCCCACCGCCATCCCTCCGACAAG
CACTTGCTGTGGGAAACGACGAGTACGACGTGACCTTTGATGTCAAGCAG
CCATTAGGCCTGGCACTCGAGGATTTTGGCAATCGCGACGGCAAGTATCG
CACTTATGTCAGTAAAACGCTCCGTGGGTCTCAAGCAACGGGCAAGGGAA
TCAGAATTCCCGCGTTGGTTGTGGCGGTAAATGGACAGAATGTTGAGGGA
CTACCCAGGAAAATGGTGGCGCAATTGATTCGAGACACGATTGAAGGACG
GAATGGGATGGGGAAAGGAGGGGTGGTGACCGTGACGTTTCGAGATCCGT
CCAAGTTCATGGAATTACTGAACGACAAAACAGCCGCCCCCGGCGACGAA
ATCACCACGCAACTCGCCCCTCAAACCAAGGCGCGGGACGCTCAAACCCT
TGCGGTCAAGAAAACCTTCGTCCCCGAGATCTGTCAGACAGGGGCCATGT
ATGGCGACTTGCTGGAAGTGAAGTACACGACCTCTCTCGCGGATGGGACA
TTTTTGGACGCCACTGGTGTCAGCACCCCGGGAAGAGGGGGCGATTCGAC
AGTTTATTTTGTGTTGGGTGAGCAAGTGGCGGGAACGGTGCCAAAGGGGT
GGGATCTGGCGTTGGTGGGCGCGTGCGTGGGGGAGCAGAGGGTGATTCGA
ACGCCGAGTGTCCTGGCGTACGGGAATAAGGGCCTCAAAAGACGAGGAAT
CCCCCCGGATGCGACAATAATTTACAATGTGGAGGTGATTGGGATCAACG
GGAATAATTTGCCCAGATAG
back to top
Synonyms
Publications