NO08G02680, NO08G02680 (gene) Nannochloropsis oceanica

Overview
NameNO08G02680
Unique NameNO08G02680
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length968
Alignment locationchr8:754395..755362 -

Link to JBrowse

Properties
Property NameValue
DescriptionSANT/Myb domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:754395..755362 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeodomain-like
IPR001005SANT/Myb
Homology
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BLAST of NO08G02680 vs. NCBI_GenBank
Match: EWM26623.1 (SANT/Myb domain protein [Nannochloropsis gaditana])

HSP 1 Score: 82.4 bits (202), Expect = 1.500e-12
Identity = 41/83 (49.40%), Postives = 58/83 (69.88%), Query Frame = 0 
Query:   65 PPMLATTQHVDHIESLLRQDRSGSYWSSVEEGRLLEALRLYETTNFTKIAQHVGTKSKTQVRNRLKHHPQG----RGAAPLPP 144
            P  +    ++DHI SL+R++  G+YWSS+EEGRLL A++LY  ++F +IAQ VGTKS+TQVR RL+ H +G       +PL P
Sbjct:  404 PSSITGNNYLDHITSLVRKNVRGTYWSSIEEGRLLHAVQLYGESDFEQIAQFVGTKSRTQVRIRLRKHAEGSLPIMARSPLQP 486
The following BLAST results are available for this feature:
BLAST of NO08G02680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26623.11.500e-1249.40SANT/Myb domain protein [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G02680.1NO08G02680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582727gene_3597Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g177gene3798Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G02680.1NO08G02680.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G02680 ID=NO08G02680|Name=NO08G02680|organism=Nannochloropsis oceanica|type=gene|length=968bp
ATGAGTTTCGACCCATCTCTCTTTCAAAATGCGCTTCAGCAGCAACCACA
GCCACAAATACTACTCCAACCGCAACCGCTGCAGCAGCAGCACCATCAAC
AGCAGCACCATCAACCACCACCACCACCACCACAACAACAACAACAATAC
TACGGTCATCCTGATACTGCTGCTTCTGGTGTTTTTGTGCTTCCCCCTAT
GCTGGCTACTACTCAACATGTGGACCACATTGAGAGCTgtaagtcgggat
gggatggacctcagggagccagtaaagggggaacaggaagacggggaaga
agggaaggagggtgggaggtttctgcactcgtatttgaagctccttttaa
aaaactattttttaatgtcataggctttggcggtatgtgttctctcccct
ccaagggattcgattcccaactctaagcctcctccctctcatcctcggcc
cctgcctttactcatggaaacaaacaacagTGCTGCGACAGGACAGGTCA
GGATCGTATTGGAGTTCAGTGGAGGAAGGTCGTCTTCTGGAAGCGCTTCG
GCTGTACGAAACCACAAgtaagttgcgtagccttagaagcagacagacaa
agaccaaaaattcctcgtccttctgcgtttctccacttcacttcacctca
cataaggaaaaatatgtgatttttttcctttcctccctctcatagtactt
tcaattctatcttcctccttttcctttttcctttcctccctccttgcttc
caacagATTTCACCAAGATCGCACAGCACGTAGGCACCAAATCCAAGACC
CAAGTCCGCAATCGCCTGAAGCATCACCCGCAAGGTAGAGGCGCTGCACC
TCTTCCTCCTCATTTTCCTCCCCCTCTTCCTCCTACCTTGACACCAGAGG
CGGTTGCCACGGCTGCTGTGCTGATGCCTCCGCCGGCCCCACGTTCGACG
AGTGTGAATGGCCGTTAG
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protein sequence of NO08G02680.1

>NO08G02680.1-protein ID=NO08G02680.1-protein|Name=NO08G02680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=179bp
MSFDPSLFQNALQQQPQPQILLQPQPLQQQHHQQQHHQPPPPPPQQQQQY
YGHPDTAASGVFVLPPMLATTQHVDHIESLLRQDRSGSYWSSVEEGRLLE
ALRLYETTNFTKIAQHVGTKSKTQVRNRLKHHPQGRGAAPLPPHFPPPLP
PTLTPEAVATAAVLMPPPAPRSTSVNGR*
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Synonyms
Publications