NO08G02680.1, NO08G02680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02680.1
Unique NameNO08G02680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length537
Alignment locationchr8:754395..755362 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:754395..755362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO08G02680.1 vs.
Match: EWM26623.1 (SANT/Myb domain protein [Nannochloropsis gaditana])

HSP 1 Score: 70.1 bits (170), Expect = 7.900e-9
Identity = 65/176 (36.93%), Postives = 85/176 (48.30%), Query Frame = 0
Query:    1 MSFDPSLFQNALQ-------------QQPQPQILLQPQPLQQQHHQQQH-------HQPPPPP-----PQQQQQYYGHPDTAASGVFVLPPMLATTQHVDHIESLLRQDRSGSYWSSVEEGRLLEALRLYETTNFTKIAQHVGTKSKTQVRNRLKHHPQGRGAAPLPPHFPPPLPP 152
            M+FDPSL Q+  +             Q  Q QI  Q QP     H Q         H P   P     P      +  P   A      P  +    ++DHI SL+R++  G+YWSS+EEGRLL A++LY  ++F +IAQ VGTKS+TQVR RL+ H +G     LP     PL P
Sbjct:  315 MNFDPSLLQSVFRTPEQSLQMTQAQAQGLQAQIQSQQQPWYHPQHSQGGFQQLDVLHNPSQNPQSILNPLPSLPSFSTPADVAPQSVTNPSSITGNNYLDHITSLVRKNVRGTYWSSIEEGRLLHAVQLYGESDFEQIAQFVGTKSRTQVRIRLRKHAEG----SLPIMARSPLQP 486          
The following BLAST results are available for this feature:
BLAST of NO08G02680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26623.17.900e-936.93SANT/Myb domain protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02680NO08G02680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02680.1NO08G02680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02680.1.cds1NO08G02680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02680.1.cds2NO08G02680.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02680.1.cds3NO08G02680.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02680.1 ID=NO08G02680.1|Name=NO08G02680.1|organism=Nannochloropsis oceanica|type=mRNA|length=537bp
ATGAGTTTCGACCCATCTCTCTTTCAAAATGCGCTTCAGCAGCAACCACA
GCCACAAATACTACTCCAACCGCAACCGCTGCAGCAGCAGCACCATCAAC
AGCAGCACCATCAACCACCACCACCACCACCACAACAACAACAACAATAC
TACGGTCATCCTGATACTGCTGCTTCTGGTGTTTTTGTGCTTCCCCCTAT
GCTGGCTACTACTCAACATGTGGACCACATTGAGAGCTTGCTGCGACAGG
ACAGGTCAGGATCGTATTGGAGTTCAGTGGAGGAAGGTCGTCTTCTGGAA
GCGCTTCGGCTGTACGAAACCACAAATTTCACCAAGATCGCACAGCACGT
AGGCACCAAATCCAAGACCCAAGTCCGCAATCGCCTGAAGCATCACCCGC
AAGGTAGAGGCGCTGCACCTCTTCCTCCTCATTTTCCTCCCCCTCTTCCT
CCTACCTTGACACCAGAGGCGGTTGCCACGGCTGCTGTGCTGATGCCTCC
GCCGGCCCCACGTTCGACGAGTGTGAATGGCCGTTAG
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protein sequence of NO08G02680.1

>NO08G02680.1-protein ID=NO08G02680.1-protein|Name=NO08G02680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=179bp
MSFDPSLFQNALQQQPQPQILLQPQPLQQQHHQQQHHQPPPPPPQQQQQY
YGHPDTAASGVFVLPPMLATTQHVDHIESLLRQDRSGSYWSSVEEGRLLE
ALRLYETTNFTKIAQHVGTKSKTQVRNRLKHHPQGRGAAPLPPHFPPPLP
PTLTPEAVATAAVLMPPPAPRSTSVNGR*
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mRNA from alignment at chr8:754395..755362-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02680.1 ID=NO08G02680.1|Name=NO08G02680.1|organism=Nannochloropsis oceanica|type=mRNA|length=968bp|location=Sequence derived from alignment at chr8:754395..755362- (Nannochloropsis oceanica)
ATGAGTTTCGACCCATCTCTCTTTCAAAATGCGCTTCAGCAGCAACCACA GCCACAAATACTACTCCAACCGCAACCGCTGCAGCAGCAGCACCATCAAC AGCAGCACCATCAACCACCACCACCACCACCACAACAACAACAACAATAC TACGGTCATCCTGATACTGCTGCTTCTGGTGTTTTTGTGCTTCCCCCTAT GCTGGCTACTACTCAACATGTGGACCACATTGAGAGCTGTAAGTCGGGAT GGGATGGACCTCAGGGAGCCAGTAAAGGGGGAACAGGAAGACGGGGAAGA AGGGAAGGAGGGTGGGAGGTTTCTGCACTCGTATTTGAAGCTCCTTTTAA AAAACTATTTTTTAATGTCATAGGCTTTGGCGGTATGTGTTCTCTCCCCT CCAAGGGATTCGATTCCCAACTCTAAGCCTCCTCCCTCTCATCCTCGGCC CCTGCCTTTACTCATGGAAACAAACAACAGTGCTGCGACAGGACAGGTCA GGATCGTATTGGAGTTCAGTGGAGGAAGGTCGTCTTCTGGAAGCGCTTCG GCTGTACGAAACCACAAGTAAGTTGCGTAGCCTTAGAAGCAGACAGACAA AGACCAAAAATTCCTCGTCCTTCTGCGTTTCTCCACTTCACTTCACCTCA CATAAGGAAAAATATGTGATTTTTTTCCTTTCCTCCCTCTCATAGTACTT TCAATTCTATCTTCCTCCTTTTCCTTTTTCCTTTCCTCCCTCCTTGCTTC CAACAGATTTCACCAAGATCGCACAGCACGTAGGCACCAAATCCAAGACC CAAGTCCGCAATCGCCTGAAGCATCACCCGCAAGGTAGAGGCGCTGCACC TCTTCCTCCTCATTTTCCTCCCCCTCTTCCTCCTACCTTGACACCAGAGG CGGTTGCCACGGCTGCTGTGCTGATGCCTCCGCCGGCCCCACGTTCGACG AGTGTGAATGGCCGTTAG
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Coding sequence (CDS) from alignment at chr8:754395..755362-

>NO08G02680.1 ID=NO08G02680.1|Name=NO08G02680.1|organism=Nannochloropsis oceanica|type=CDS|length=537bp|location=Sequence derived from alignment at chr8:754395..755362- (Nannochloropsis oceanica)
ATGAGTTTCGACCCATCTCTCTTTCAAAATGCGCTTCAGCAGCAACCACA
GCCACAAATACTACTCCAACCGCAACCGCTGCAGCAGCAGCACCATCAAC
AGCAGCACCATCAACCACCACCACCACCACCACAACAACAACAACAATAC
TACGGTCATCCTGATACTGCTGCTTCTGGTGTTTTTGTGCTTCCCCCTAT
GCTGGCTACTACTCAACATGTGGACCACATTGAGAGCTTGCTGCGACAGG
ACAGGTCAGGATCGTATTGGAGTTCAGTGGAGGAAGGTCGTCTTCTGGAA
GCGCTTCGGCTGTACGAAACCACAAATTTCACCAAGATCGCACAGCACGT
AGGCACCAAATCCAAGACCCAAGTCCGCAATCGCCTGAAGCATCACCCGC
AAGGTAGAGGCGCTGCACCTCTTCCTCCTCATTTTCCTCCCCCTCTTCCT
CCTACCTTGACACCAGAGGCGGTTGCCACGGCTGCTGTGCTGATGCCTCC
GCCGGCCCCACGTTCGACGAGTGTGAATGGCCGTTAG
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Synonyms
Publications