NO08G02350, NO08G02350 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO08G02350 vs. NCBI_GenBank
Match: EWM26729.1 (Pentatricopeptide repeat containining protein [Nannochloropsis gaditana]) HSP 1 Score: 719.9 bits (1857), Expect = 8.900e-204 Identity = 496/691 (71.78%), Postives = 567/691 (82.05%), Query Frame = 0 Query: 109 IPPSVGKAQQSRAERGRQLNNELARIKVAGPVVDNELYLKALRSCAKLGNVKMAMTLLRQMQQQSPPPR-------VAYNLVLEAAARAQDRNVAVCVYTEMLWG-----RDGDGAEAIGVNVFTYGQMLSLYANLADGPAALALLKEMAAQGVAGNAFTYTSAIDACERSGLVGETERLXXXXXXXXXXXXXXXXNTIIARRAEQADTWTEALDWLAKLEASGIEPLRSSYAAALNACERAEEWELVVELTERAGSLADTTMWSRNLAALIKLMRHEEALAIFRRLREEQTVPMDEVLYTLALKACALARRPYGEARALLEEMRAAGLAPNVVTFSAAMEACNGDRDSEGMPNWEMXXXXXXXXXXXXXXXXXXXXXXXXXXLTEAGQWQRALHLFMTLEKDGEQAGATKSVWLYTAAIRACAQGRQLETALALLREVTADPARHGVPNLXXXXXXXXXXXXXXXXXXXXXXXXXMAREHSIVVDDVACGVVISACRKAGLVGDCLRLLAFMLNHRLAPNLGVYNTVIGALCSQPKYVDKAIEVLSFLVASQRPGNANISGSSRSARAPRPNTQSYSQVVDALADALRWDEALRLLQEMRDAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEYSFYELELLDQVFKKLVGVAAAGLRSISRGGGATEGGTVESTAAGTGVGRQG 788 + PS G+ ++ RAERGRQL NELARI+ AG +LY+KALRSCAKLG V +AM LLRQMQ+Q PR +A+NLVLEAAA+AQDR+VA+ VY EML G G + +GVNVFTYGQ+LSL+A LADG AAL +L+EMAAQ XXXXXXXXXXXXXXXX TIIARRAE+ DTWTEALDWLAKLEASGI+PLRSSYAAA+NACERAEEWELVVELTERA LADTTMWSR+L+A+++L RHE LA FR+LREE+T+P+DEV+YTLALKACAL RP+ EARALL +MR +GL PNVVTFSAAMEAC GD DS G PNWEM XXXXXXXXXXXXXXXXXXXXXXX LT++GQWQRALH+FMTLE++ +QA K+VWLYTAAIRACA+G+Q++TA+ALLREVT DP+ HG P+LXXXXXXXXXXXXXXXXXXXXXXXXX +H+I+VDDVACGVVISACRKAGLVGDCLRLLAFMLNHRLAPNLGVYNTV+GALCSQP+Y+DKAIEVL FL ASQ ++N++ S+ +R PRPN QS+SQV+DALADALRW++AL LLQEMR+ G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD+YSFYELELLDQVFKKLVGVAAAGLRSIS GGA + T E+ A T GR+G Sbjct: 129 LTPSAGRIRRFRAERGRQLENELARIEAAGARAGLDLYIKALRSCAKLGKVDVAMMLLRQMQEQPAGPRRVPATPLLAFNLVLEAAAKAQDRDVALSVYNEMLCGVGEKAATGPASPGVGVNVFTYGQLLSLFAKLADGRAALDILEEMAAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIIARRAERVDTWTEALDWLAKLEASGIQPLRSSYAAAINACERAEEWELVVELTERAEELADTTMWSRSLSAMLRLGRHESVLATFRQLREEKTIPVDEVMYTLALKACALGHRPFHEARALLMDMRTSGLTPNVVTFSAAMEACGGDTDSNGAPNWEMALXXXXXXXXXXXXXXXXXXXXXXXILTDSGQWQRALHIFMTLEREEDQAEVPKTVWLYTAAIRACAKGQQIDTAIALLREVTTDPSAHGAPDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHNIIVDDVACGVVISACRKAGLVGDCLRLLAFMLNHRLAPNLGVYNTVLGALCSQPEYLDKAIEVLHFLKASQPSSSSNLNLRSKPSRTPRPNAQSFSQVIDALADALRWEDALSLLQEMRNVGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDYSFYELELLDQVFKKLVGVAAAGLRSIS--GGAAD-STSETARAATDSGREG 816
BLAST of NO08G02350 vs. NCBI_GenBank
Match: EWM26730.1 (Pentatricopeptide repeat containining protein [Nannochloropsis gaditana]) HSP 1 Score: 719.9 bits (1857), Expect = 8.900e-204 Identity = 496/691 (71.78%), Postives = 567/691 (82.05%), Query Frame = 0 Query: 109 IPPSVGKAQQSRAERGRQLNNELARIKVAGPVVDNELYLKALRSCAKLGNVKMAMTLLRQMQQQSPPPR-------VAYNLVLEAAARAQDRNVAVCVYTEMLWG-----RDGDGAEAIGVNVFTYGQMLSLYANLADGPAALALLKEMAAQGVAGNAFTYTSAIDACERSGLVGETERLXXXXXXXXXXXXXXXXNTIIARRAEQADTWTEALDWLAKLEASGIEPLRSSYAAALNACERAEEWELVVELTERAGSLADTTMWSRNLAALIKLMRHEEALAIFRRLREEQTVPMDEVLYTLALKACALARRPYGEARALLEEMRAAGLAPNVVTFSAAMEACNGDRDSEGMPNWEMXXXXXXXXXXXXXXXXXXXXXXXXXXLTEAGQWQRALHLFMTLEKDGEQAGATKSVWLYTAAIRACAQGRQLETALALLREVTADPARHGVPNLXXXXXXXXXXXXXXXXXXXXXXXXXMAREHSIVVDDVACGVVISACRKAGLVGDCLRLLAFMLNHRLAPNLGVYNTVIGALCSQPKYVDKAIEVLSFLVASQRPGNANISGSSRSARAPRPNTQSYSQVVDALADALRWDEALRLLQEMRDAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEYSFYELELLDQVFKKLVGVAAAGLRSISRGGGATEGGTVESTAAGTGVGRQG 788 + PS G+ ++ RAERGRQL NELARI+ AG +LY+KALRSCAKLG V +AM LLRQMQ+Q PR +A+NLVLEAAA+AQDR+VA+ VY EML G G + +GVNVFTYGQ+LSL+A LADG AAL +L+EMAAQ XXXXXXXXXXXXXXXX TIIARRAE+ DTWTEALDWLAKLEASGI+PLRSSYAAA+NACERAEEWELVVELTERA LADTTMWSR+L+A+++L RHE LA FR+LREE+T+P+DEV+YTLALKACAL RP+ EARALL +MR +GL PNVVTFSAAMEAC GD DS G PNWEM XXXXXXXXXXXXXXXXXXXXXXX LT++GQWQRALH+FMTLE++ +QA K+VWLYTAAIRACA+G+Q++TA+ALLREVT DP+ HG P+LXXXXXXXXXXXXXXXXXXXXXXXXX +H+I+VDDVACGVVISACRKAGLVGDCLRLLAFMLNHRLAPNLGVYNTV+GALCSQP+Y+DKAIEVL FL ASQ ++N++ S+ +R PRPN QS+SQV+DALADALRW++AL LLQEMR+ G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD+YSFYELELLDQVFKKLVGVAAAGLRSIS GGA + T E+ A T GR+G Sbjct: 139 LTPSAGRIRRFRAERGRQLENELARIEAAGARAGLDLYIKALRSCAKLGKVDVAMMLLRQMQEQPAGPRRVPATPLLAFNLVLEAAAKAQDRDVALSVYNEMLCGVGEKAATGPASPGVGVNVFTYGQLLSLFAKLADGRAALDILEEMAAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIIARRAERVDTWTEALDWLAKLEASGIQPLRSSYAAAINACERAEEWELVVELTERAEELADTTMWSRSLSAMLRLGRHESVLATFRQLREEKTIPVDEVMYTLALKACALGHRPFHEARALLMDMRTSGLTPNVVTFSAAMEACGGDTDSNGAPNWEMALXXXXXXXXXXXXXXXXXXXXXXXILTDSGQWQRALHIFMTLEREEDQAEVPKTVWLYTAAIRACAKGQQIDTAIALLREVTTDPSAHGAPDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHNIIVDDVACGVVISACRKAGLVGDCLRLLAFMLNHRLAPNLGVYNTVLGALCSQPEYLDKAIEVLHFLKASQPSSSSNLNLRSKPSRTPRPNAQSFSQVIDALADALRWEDALSLLQEMRNVGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDYSFYELELLDQVFKKLVGVAAAGLRSIS--GGAAD-STSETARAATDSGREG 826
BLAST of NO08G02350 vs. NCBI_GenBank
Match: GAX28990.1 (hypothetical protein FisN_1Hh012 [Fistulifera solaris]) HSP 1 Score: 78.6 bits (192), Expect = 1.000e-10 Identity = 148/668 (22.16%), Postives = 229/668 (34.28%), Query Frame = 0 Query: 150 LRSCAKLGNVKMAMTLLRQ-----MQQQSPPPRVAYNLVLEAAARAQDRNVAVCVYTEMLWGRDGDGAEAIGVNVFTYGQMLSLYANLADGPAALALLKEMAAQG---VAGNAFTYTSAIDACERSGLVGETERLXXXXXXXXXXXXXXXXNTIIARRAEQADTWTEALDWLAKLEASGIEPLRSSYAAALNACERAEEWELVVELTERAGSLADTTMW-----SRNLAALIKLMRHEEALAIFRRLREEQTVPMDE---VLYTLALKACALARRPYGEARALLEEMRAAGLAPNVVTFSAAMEACNGDRDSEGMPNWEMXXXXXXXXXXXXXXXXXXXXXXXXXXLTEAGQWQRALHLFMTLEKDGEQAGATKSVWLYTAAIRACAQGRQLETALALLREVTADPARHG---------VPNLXXXXXXXXXXXXXXXXXXXXXXXXXM--AREHSIVVDDVACGVVISACRKAGLVGDCLRLLAFML-NHRLAPNLGVYNTVIGALCSQPKYVDKAIEVLSFLVASQRPGNANISGSSRSARAPRPNTQSYSQVVDALADALRWDEALRLLQEMRDAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEYSFYELELLDQVFKKLVGVAAAGLRSISRGGGATEGGTVESTAAGTGVGRQGHE 790 L +CA+ G+ A LRQ + P V Y + A +A D ++ E L + I + V Y ++S A D A+A++K+M A A +A TY + + ACE +G W + L+ ++ G + + ++ L+AC++ E ++L E+ +L T + LA E P +E V YT A+ C + + A L++ MR G+ PN +TF A + AC +T + +Q+A+ L L+KD ++ +Y AA+R CA+ L+ A AL E+ D PN+ M I +++ G +SACR+A L ML N +L PN+ YNTV+ A A + F P +PN QSY ++ ALA R EAL LLQ+M+ AG D Y FY +LD FK+ V + + S+ RG + +S AG G R +E Sbjct: 3 LNACARAGDAVTAQRWLRQANTLFARNPIAPNEVCYQACMTACVQANDFASCRKLFHEAL-------EKGIPLTVIGYNIVVSAAAKQGDWQTAMAVVKQMQAPNSTTPAPDAVTYGTLLAACEAAG------------------------------------QWLQVLEQAQAMKNEGFDLDVRALSSCLHACQQLGRAEQALQLLEQMEALPATDTQVPDAVAYRLALSXXXXXXXXXXXXXXXXXLETHFPHEEANVVAYTAAIAGCE-SEGQWKVAFRLVDRMRKRGVQPNEMTFVAVLAAC----------------ATACARQASTLASKTSTDVSAPKDITSSEPYQQAMKLLRVLKKD--TTVVNPNIHVYNAALRVCAEACDLKGAFALYNELIEDRDSSANIPEGTVTLAPNIVTFGTLMTACERVGSMEGVTQVFRWMQDLSGPPIKPNEIVYGAALSACRRAQNDERSFFLFEQMLQNPKLRPNVATYNTVLLAQTEAGTKTSTARALSVFRSLYNSP-------------YTQPNRQSYQIIIRALALDRRPLEALTLLQQMQQAGFRPDVDLYTCTVAAFEKTGQPAQALKLMEAMRADGYDFYSNGVLDAAFKQGVQIVS----SVQRGLETKK--MPKSLDAGLGAPRSFNE 589
BLAST of NO08G02350 vs. NCBI_GenBank
Match: GAX11622.1 (hypothetical protein FisN_1Lh012 [Fistulifera solaris]) HSP 1 Score: 71.6 bits (174), Expect = 1.300e-8 Identity = 149/721 (20.67%), Postives = 238/721 (33.01%), Query Frame = 0 Query: 142 DNELYLKALRSCAKLGNVKMAMTLLRQMQQQSPPPRVA--YNLVLEAAARAQDRNVAVCVYTEMLWGRDGDGAEAIGVNVFTYGQMLSLYANLADGPAALALLKE----MAAQGVAGNAFTYTSAIDACERSGLVGETERLXXXXXXXXXXXXXXXXNTIIARRAEQADTWTEALDWLAKLEASGIE---PLRSSYAAALNACERAEEWELVVELTE---RAGSLADTTMWSRNLAALIKLMRHEEALAIFRRLREEQTVPM------DEVLYTLALKACALARRPYGEARALLEE-------------------------------------MRAAGLAPNVVTFSAAMEACNGDRDSEGMPNWEMXXXXXXXXXXXXXXXXXXXXXXXXXXLTEAGQWQRALHLFMTLEKDGEQAGATKSVWLYTAAIRACAQGRQLETALALLREVTADP-ARHGVPNLXXXXXXXXXXXXXXXXXXXXXXXXXMAREHSIVVDDVACGVVISACRKAGLVGDCLRLLAFM---------------------------------------LNHRLAPNLGVYNTVIGALCSQPKYVD--KAIEVLSFLVASQRPGNANISGSSRSARAPRPNTQSYSQVVDALADALRWDEALRLLQEMRDAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEYSFYELELLDQVFKKLVGVAAAGLRSISRG 766 D+ + + +R + G A+ L + QQS N ++A ARA + + + VNV+T G +L+ A D A L++ + N Y + + AC ++ +L N +++ A+Q D W A+ + +++A P +Y L ACE A +W V+E + G D S L A +L R ++AL + L + + +PM D V Y LAL ACA + E LLE+ MR G+ PN +TF A + AC +T + +Q+A+ L ++KD ++ +Y AA+R CA+ L A AL E+ P + VP S+ + V G +++AC + G + ++ +M N +L PN+ YNTV+ A + +A+ V L S +PN QSY ++ ALA R EA+ LLQ+M+ AG D Y FY +LD FK+ V + + S+ RG Sbjct: 3 DSSSWEQRIRKAGRQGRTDEAIELYETLLQQSSSFLTIRHVNSAIDALARASPPRLEQALQLAQ--------SSPCRVNVYTLGMLLNACARAGDAATAQRWLRQANTLFPRNPITPNEVCYQACMTACVQANDFAACRKLFHEALEKGIPLTVIGYNIVLSAAAKQGD-WQTAMAVVKQMQAPNSTTPVPDAVTYGTLLAACEAAGQWLQVLEQAQAMKNEGFHLDVRALSSCLHACQQLGRADQALQL---LEQMEALPMIDTQVPDAVAYRLALSACARGGK-LAEGLRLLEKLETQFSHEEANXXXXXXXXXXXXXXXXXXXXXXXXXXMRKRGVQPNEMTFVAVLAAC----------------ATACARQAFSLASKTSTDLSAPKNITSSEPYQQAMKLLRVMKKD--PTVVNPNIHVYNAALRVCAEACDLTGAFALYSELLEGPDSSSNVPE----------------------------GTVSLKPNIVTFGTLMTACERVGSMEGVSQVFRWMQEFSDPPXXXXXXXXXXXXXXXXXXXXXERSFFLFEQMLRNQKLRPNVATYNTVLLAQTEANTKISMTRALSVFRSLYNSP---------------YTQPNRQSYQIMIRALALDRRPLEAMTLLQQMQQAGFRPDVDLYTCTVTAFEKTGQPAQALKLMEAMRADGYDFYSNGVLDAAFKQGVQIVS----SVQRG 645
BLAST of NO08G02350 vs. NCBI_GenBank
Match: XP_024518174.1 (pentatricopeptide repeat-containing protein At3g57430, chloroplastic [Selaginella moellendorffii]) HSP 1 Score: 70.9 bits (172), Expect = 2.200e-8 Identity = 126/539 (23.38%), Postives = 197/539 (36.55%), Query Frame = 0 Query: 150 LRSCAKLGNVKMAMTLLRQMQQQS-PPPRVAYNLVLEAAARAQDRN---------------VAVCVYTEM--LWGRDGDGAEAIGV-------NVFTYGQMLSLYANLADGPAALALLKEMAAQGVAGNAFTYTSAIDACERSGLVGETERLXXXXXXXXXXXXXXXXNTIIARRAEQAD-----------------TWT-------------EALDWLAKLEASGIEPLRSSYAAALNACERAEE----------------------WELVVELTERAGSL------------ADTTMWSRNLAALIKLMRHEEALAIFRRLREEQTVPMDEVLYTLALKACALARRPYGEARALLEEMRAAGLAPNVVTFSAA--MEACNGDRDSEGMPNWEMXXXXXXXXXXXXXXXXXXXXXXXXXXLTEAGQWQRALHLFMTLEKDGEQAGATKSVWLYTAAIRACAQGRQLETALALLREVTADPARHGVPNLXXXXXXXXXXXXXXXXXXXXXXXXXMAREHSIVVDDVACGVVISACRKAG 598 L S +LG+ + AM L R M + P R + +L A A +D + V V T + ++G+ G AEA GV +V ++ M++ YA G AL LLK+M +G+ + T+ S +DAC SG + NT+++ + A +W EAL L K++ G++P + SY A LNAC E ++ L + GSL D W+ L A I+L +EAL +F+ + E T P D+V Y LAL ACA A P + + + + GL + +A M A G+ D+ N E + G + +L LF +++DG +A + AI +C+ ++ A+A + D HG+ L A E S+ +D V+ +SACR G Sbjct: 109 LTSYTQLGHAREAMELSRLMSMEGFRPNRASLLGLLAACATLEDLEQGRKFHATFLASGFMMDVFVETTLVNMYGKCGSLAEARGVLEGMEVKSVVSWNAMITAYAQHRHGREALELLKKMDLEGIPPSKVTFVSILDACASSGDLTRGRSAHSRAIATGFGGDVNVNNTLVSMYGKCASLDEARKVFDEMPSRDLVSWNALAVEYSQHGCGKEALKLLWKMDLEGLKPDKISYTALLNACVYTGEESAKAMHRRVLASGFQLDGNIVANFLINLYAKCGSLENSKCVFDGLKKKDVVSWNAMLTAYIQLDSPKEALKLFQAMDMEGTKP-DQVSYVLALDACAGAVAP-TQGKLFHSRVASQGLDSDDTVRNAIVNMYAECGNLDA---ANREFERIKRRDVVSWTVMVAAN---------AQHGNPRDSLKLFWKMQQDGTKADDVS----FLCAILSCSHSGLVKDAMACFSSMVED---HGIQPLAEHFGCVVDALAKVGRLGE-------AEEFSLAMDAVSWRAFLSACRVHG 619
BLAST of NO08G02350 vs. NCBI_GenBank
Match: XP_024539939.1 (pentatricopeptide repeat-containing protein At4g18520, chloroplastic [Selaginella moellendorffii]) HSP 1 Score: 69.3 bits (168), Expect = 6.300e-8 Identity = 127/539 (23.56%), Postives = 199/539 (36.92%), Query Frame = 0 Query: 150 LRSCAKLGNVKMAMTLLRQMQQQS-PPPRVAYNLVLEAAARAQDRN---------------VAVCVYTEM--LWGRDGDGAEAIGV-------NVFTYGQMLSLYANLADGPAALALLKEMAAQGVAGNAFTYTSAIDACERSGLVGETERLXXXXXXXXXXXXXXXXNTIIA-----RRAEQAD------------TWT-------------EALDWLAKLEASGIEPLRSSYAAALNACERAEE----------------------WELVVELTERAGSL------------ADTTMWSRNLAALIKLMRHEEALAIFRRLREEQTVPMDEVLYTLALKACALARRPYGEARALLEEMRAAGLAPNVVTFSAA--MEACNGDRDSEGMPNWEMXXXXXXXXXXXXXXXXXXXXXXXXXXLTEAGQWQRALHLFMTLEKDGEQAGATKSVWLYTAAIRACAQGRQLETALALLREVTADPARHGVPNLXXXXXXXXXXXXXXXXXXXXXXXXXMAREHSIVVDDVACGVVISACRKAG 598 L S +LG+ + AM L R M + P R + +L A A +D + V V T + ++G+ G AEA GV +V ++ M++ YA G AL LLK+M +G+ + T+ S +DAC SG + NT+++ R ++A +W EAL L K++ G++P + SY A LNAC E ++ L + GSL D W+ L A I+L +EAL +F+ + E T P D+V Y LAL ACA A P + + + + GL + +A M A G+ D+ N E + G + +L LF +++DG +A + AI +C+ ++ A+A + D HG+ L A E S+ +D V+ +SACR G Sbjct: 364 LTSYTQLGHAREAMELSRLMSMEGFRPNRASLLGLLAACATLEDLEQGRKFHATFLASGFMMDVFVETTLVNMYGKCGSLAEARGVLEGMEVKSVVSWNAMITAYAQHRHGREALELLKKMDLEGIPPSKVTFVSILDACASSGDLTRGRSAHSRAIATGFGGDVNVNNTLVSMYGKCARLDEARKVFDEMPSRDLVSWNALAVEYSQHGCGKEALKLLWKMDLEGLKPDKISYTALLNACVYTGEESAKAMHRRVLASGFQLDGNIVANFLINLYAKCGSLENSKCVFDGLKKKDVVSWNAMLTAYIQLDSPKEALKLFQAMDMEGTKP-DQVSYVLALDACAGAVAP-TQGKLFHFRVASQGLDSDDTVRNAIVNMYAECGNLDA---ANREFERIKRRDVVSWTVMVAAN---------AQHGNPRDSLKLFWKMQQDGTKADDVS----FLCAILSCSHSGLVKDAMACFSSMVED---HGIQPLAEHFGCLVDALAKVGRLGE-------AEEFSLAMDAVSWRAFLSACRVHG 874 The following BLAST results are available for this feature:
BLAST of NO08G02350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 6
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO08G02350 ID=NO08G02350|Name=NO08G02350|organism=Nannochloropsis oceanica|type=gene|length=2647bpback to top protein sequence of NO08G02350.1 >NO08G02350.1-protein ID=NO08G02350.1-protein|Name=NO08G02350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=831bpback to top Synonyms
Publications
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