NO08G02200, NO08G02200 (gene) Nannochloropsis oceanica

Overview
NameNO08G02200
Unique NameNO08G02200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2414
Alignment locationchr8:648980..651393 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:648980..651393 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO08G02200 vs. NCBI_GenBank
Match: EWM26582.1 (hypothetical protein Naga_100001g126 [Nannochloropsis gaditana])

HSP 1 Score: 328.6 bits (841), Expect = 4.400e-86
Identity = 220/601 (36.61%), Postives = 304/601 (50.58%), Query Frame = 0 
Query:   52 KDEAGLCGLVLAEVVMEIIEKADFFPALGQCNASKGIQGLQHQVQARKLSSLRLDVLDNLVSPFLLLAAAEKMYYSGADLTESCAGPLPMYEEVHSDLGTLLQLFQPHAKSAFVPLLQIAQIVVEIRIWLCRWYLLDDSSAGPLSAAPIEGPEAQAARQDPLSTLTAQMQRLQKCKSHWKGHLTDLLPWMEVVLVEGKTVDICLRALASLNRHPPDLLSVTVQLLRMRKAIGLWEDESVIQPPASERDVVIRAPRYQLLRQLFQHLINKMPLRFHAVADQVMPLSKYNTELLGLPSSSSS----LSPHHSSSDSG-----SSNPYVALIARFLLSYGPAAKVCVSIFKQTSEGAAEKEVVNTSTNKNHRAPEEGHAYDLPC-VRGSLTAPSQRQDILDRGFVPTFSMTSGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPGMGITTVGSELSG-----SXXXXXXXXXXXXXXXXXXXWFWALCHHSGLWLAVEGRLPEGGAQRFSLSGARGEGGGKGQVSGPRASPLEGTFIHQSGKHHTFTYFVAHVSPEERLVVAFGDRICPANDKTVTSFLRTATSFLNDRIA 638
            +  +G CG  L E+VM++I  + FF AL   +    +Q LQ++++ +K +S  L VLDNL+SPFLLLAAAEKM+  G DL +SC  P  MY +V  DLGTLLQLF   +  +   LL+  ++VV +R+WLCRW                EG      +++P +                      +L W ++V  E +TV + L++L  +N +P   LSV  +L+ +R  +  W+  +    PAS R V +   R ++L + F HL+ K+P RF  +ADQVM LS+YNTE+LGL  +  S     SP    +D G     S NPY+ LI  FLLSYGP A++CV+IF  +S+G+   E   T      R  EE  +Y LP      + +  QR+    R F+P FSMTS                                           +P +    V S  SG                         WFW LC  SGLW A++GR+PEGGAQRFSL G     G K   +   ++P++GTFIHQSG+   ++YFVAH+SP ERLVVAFGDR  PA D+ V +FL  A S L D +A
Sbjct:    2 ESSSGKCGYDLIEIVMDLIVSSRFFAALATQDPHAAVQRLQNRLREQKPASGELSVLDNLISPFLLLAAAEKMHNLGVDLIDSCVKPEAMYADVDKDLGTLLQLFDTKSTQSLATLLRNMRLVVGLRLWLCRW----------------EG----LRKEEPPNF---------------------MLHWRDLVSAEAETVALSLQSLVLMNSYPYQFLSVVAKLVALRAKLLRWKAATAAHGPASARGVAVGETRLRVLIRQFYHLVYKLPFRFDKIADQVMDLSQYNTEILGLCGTLDSPFQYSSPRRDRADGGKTETSSCNPYMDLIVDFLLSYGPTAQICVAIF-LSSKGSGTGEASVT------RGLEENCSYALPVGPDEEIPSSPQRKRPDRRDFLPVFSMTS-------------FQAATGGRRSDSEHPPPMLSSLSSSLADAAIPRLNSGAVSSFSSGLQPDSRSQIAEDGKQCLVGEGGLPHWFWDLCRCSGLWPAIQGRIPEGGAQRFSLLGV----GSKEHGTCTPSAPMDGTFIHQSGRTMAYSYFVAHISPWERLVVAFGDRTRPATDRVVLTFLMAALSILKDSVA 537
The following BLAST results are available for this feature:
BLAST of NO08G02200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26582.14.400e-8636.61hypothetical protein Naga_100001g126 [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008816NSK008816Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G02200.1NO08G02200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO08G02200.2NO08G02200.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628960gene_3548Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g126gene3841Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G02200.1NO08G02200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO08G02200.2NO08G02200.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G02200 ID=NO08G02200|Name=NO08G02200|organism=Nannochloropsis oceanica|type=gene|length=2414bp
GGGTTAGAGCTCTCTGGTCGCGTAAAACGCTTGGATACAATACGAGACGT
AAAGCTAAACGGCAGCAGGTTATTTTTGATTGCTCGCTCTTTCGTTCCCC
AGAAAGCGAAGCAGTCGAGGTCTGCGGCAGAAGCTTTCGCGCAATACCAA
GCCAACGCTGCCGCCAAACAATGTATGTGCTGCGTCCTTTAGGTGGCTGG
AATGGACTGTGCGCCTCAATTTTTGGGGTTATTAAGGAGGAGGTTGAATA
CAACACAAAATCCGCTCCCACACCACTTTACAGGATGGCCAAAGAGAGCG
ACGACGACAAACCAGACAAGGGAAAGGATGAAGCGGGCCTGTGCGGGCTG
GTCTTGGCCGAGGTGGTCATGGAGATCATTGAGAAGGCCGACTTCTTCCC
TGCGCTTGGCCAGTGCAATGCTTCCAAAGGCATACAGGGCCTACAACATC
AGGTCCAAGCGCGCAAGCTCTCATCGTTGCGACTGGACGTTCTCGACAAC
TTGGTATCTCCCTTCCTCCTACTTGCGGCGGCCGAAAAGATgtaggtttt
tcgtaggaaaatagttagctagacgtctgggtacgttgccatcacagaag
actccttccccacccacatctaatcttgcattcgtagcgaagaaaaacaa
atggaatattacatcgactcacctaagatgtgtccacgcacagGTATTAT
TCTGGCGCGGACCTGACGGAAAGCTGTGCGGGGCCACTGCCCATGTACGA
AGAGGTCCATTCAGACCTGGGCACGCTCCTGCAGCTTTTCCAACCACATG
CCAAATCGGCTTTTGTACCTTTGCTACAAATTGCACAAATCGTTGTCGAA
ATTCGGATATGGCTTTGTCGGTGGTACCTGCTTGACGACTCTTCTGCCGG
CCCCTTGTCCGCGGCCCCAATAGAGGGGCCGGAGGCACAAGCCGCCAGGC
AAGACCCACTGTCCACCTTGACAGCGCAGATGCAACGCTTACAAAAATGT
AAATCGCATTGGAAAGGGCACCTCACGGATCTACTTCCTTGGATGGAGGT
GGTGCTCGTGGAAGGCAAGACGGTCGATATATGTTTACGAGCGCTCGCAT
CATTGAACCGTCACCCTCCCGACCTTCTTTCCGTCACCGTCCAGCTGCTC
CGCATGCGCAAGGCAATCGGCCTGTGGGAGGACGAATCAGTTATACAACC
TCCAGCTTCAGAGAGGGATGTCGTAATTAGGGCTCCGCGATACCAGCTTT
TGCGTCAGCTGTTCCAGCACCTCATCAATAAAATGCCTCTGCGCTTTCAC
GCTGTGGCTGATCAGGTCATGCCCCTGTCCAAGTATAATACCGAGCTGTT
GGGTCTGCCCTCATCCTCTTCATCTCTTTCTCCTCACCATAGCAGCAGTG
ACAGTGGCAGCTCCAATCCCTATGTCGCTTTAATTGCACGCTTTCTGCTC
TCATACGGCCCCGCCGCCAAGGTCTGTGTCAGCATCTTTAAACAGACCAG
TGAAGGAGCGGCGGAAAAGGAGGTGGTCAACACCTCCACCAACAAAAACC
ACCGGGCACCGGAAGAGGGTCATGCCTACGACTTGCCTTGCGTAAGGGGC
TCACTGACAGCACCATCGCAGCGGCAGGATATCTTGGACCGTGGATTTGT
GCCAACCTTTTCCATGACTTCGGGTAAAGCTGCGGCGGCAAGCGGCAGCA
AGCAGCACAGCAGCGCGCGATACGTGACGGTATCGTCCTCATCTTCCGCC
TTGGCCTCCGAGCCCCCCTTAGGCCGCCTCTCATCTTCATCGTCATCAAA
AGTGCCTGGCATGGGAATCACGACGGTGGGTTCGGAGCTTAGTGGATCAT
TTACCTCCACCTCCTCATCTTCCTCGTCAGCACGTCGAGACCACGGCCCA
CCACCCTGGTTTTGGGCGCTGTGCCACCATAGCGGCTTGTGGTTGGCAGT
AGAAGGGCGATTGCCAGAGGGGGGAGCTCAGCGATTCTCCCTTTCGGGCG
CCAGGGGGGAAGGAGGGGGTAAAGGACAAGTTAGCGGACCCAGGGCGTCA
CCTTTGGAAGGAACGTTCATCCATCAAAGCGGCAAACACCACACCTTCAC
CTACTTTGTTGCGCATGTCTCGCCGGAGGAACGACTGGTGGTGGCTTTTG
GAGACCGCATCTGTCCTGCAAATGACAAGACAGTGACTTCCTTTCTCAGG
ACGGCGACATCTTTCCTCAACGATAGAATTGCACACGGGGTGTAAATTTT
GAGTGCGGGCTTAATATTACAAATTTTCATGTAGAAGGGGACACCCAAAA
AAAAAAAAGAGTACAGAATAATCATATGCCCTGTTTTATTTTCATGGGTC
GTCAAATTTATTCAACTACATAGGGAAATAGTAAAATGATTATTATTCAC
TAGATGGTGGACCG
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protein sequence of NO08G02200.1

>NO08G02200.1-protein ID=NO08G02200.1-protein|Name=NO08G02200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=641bp
MYVLRPLGGWNGLCASIFGVIKEEVEYNTKSAPTPLYRMAKESDDDKPDK
GKDEAGLCGLVLAEVVMEIIEKADFFPALGQCNASKGIQGLQHQVQARKL
SSLRLDVLDNLVSPFLLLAAAEKMYYSGADLTESCAGPLPMYEEVHSDLG
TLLQLFQPHAKSAFVPLLQIAQIVVEIRIWLCRWYLLDDSSAGPLSAAPI
EGPEAQAARQDPLSTLTAQMQRLQKCKSHWKGHLTDLLPWMEVVLVEGKT
VDICLRALASLNRHPPDLLSVTVQLLRMRKAIGLWEDESVIQPPASERDV
VIRAPRYQLLRQLFQHLINKMPLRFHAVADQVMPLSKYNTELLGLPSSSS
SLSPHHSSSDSGSSNPYVALIARFLLSYGPAAKVCVSIFKQTSEGAAEKE
VVNTSTNKNHRAPEEGHAYDLPCVRGSLTAPSQRQDILDRGFVPTFSMTS
GKAAAASGSKQHSSARYVTVSSSSSALASEPPLGRLSSSSSSKVPGMGIT
TVGSELSGSFTSTSSSSSSARRDHGPPPWFWALCHHSGLWLAVEGRLPEG
GAQRFSLSGARGEGGGKGQVSGPRASPLEGTFIHQSGKHHTFTYFVAHVS
PEERLVVAFGDRICPANDKTVTSFLRTATSFLNDRIAHGV*
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protein sequence of NO08G02200.2

>NO08G02200.2-protein ID=NO08G02200.2-protein|Name=NO08G02200.2|organism=Nannochloropsis oceanica|type=polypeptide|length=501bp
MYEEVHSDLGTLLQLFQPHAKSAFVPLLQIAQIVVEIRIWLCRWYLLDDS
SAGPLSAAPIEGPEAQAARQDPLSTLTAQMQRLQKCKSHWKGHLTDLLPW
MEVVLVEGKTVDICLRALASLNRHPPDLLSVTVQLLRMRKAIGLWEDESV
IQPPASERDVVIRAPRYQLLRQLFQHLINKMPLRFHAVADQVMPLSKYNT
ELLGLPSSSSSLSPHHSSSDSGSSNPYVALIARFLLSYGPAAKVCVSIFK
QTSEGAAEKEVVNTSTNKNHRAPEEGHAYDLPCVRGSLTAPSQRQDILDR
GFVPTFSMTSGKAAAASGSKQHSSARYVTVSSSSSALASEPPLGRLSSSS
SSKVPGMGITTVGSELSGSFTSTSSSSSSARRDHGPPPWFWALCHHSGLW
LAVEGRLPEGGAQRFSLSGARGEGGGKGQVSGPRASPLEGTFIHQSGKHH
TFTYFVAHVSPEERLVVAFGDRICPANDKTVTSFLRTATSFLNDRIAHGV
*
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Synonyms
Publications