NO08G02200.1, NO08G02200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02200.1
Unique NameNO08G02200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2262
Alignment locationchr8:648980..651393 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:648980..651393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G02200.1 vs.
Match: EWM26582.1 (hypothetical protein Naga_100001g126 [Nannochloropsis gaditana])

HSP 1 Score: 303.5 bits (776), Expect = 1.500e-78
Identity = 225/600 (37.50%), Postives = 314/600 (52.33%), Query Frame = 0 
Query:   52 KDEAGLCGLVLAEVVMEIIEKADFFPALGQCNASKGIQGLQHQVQARKLSSLRLDVLDNLVSPFLLLAAAEKMYYSGADLTESCAGPLPMYEEVHSDLGTLLQLFQPHAKSAFVPLLQIAQIVVEIRIWLCRWYLLDDSSAGPLSAAPIEGPEAQAARQDPLS----TLTAQMQRLQKCKSHWKGHLTDLLPWMEVVLVEGKTVDICLRALASLNRHPPDLLSVTVQLLRMRKAIGLWEDESVIQPPASERDVVIRAPRYQLLRQLFQHLINKMPLRFHAVADQVMPLSKYNTELLGLPSSSSS----LSPHHSSSDSG-----SSNPYVALIARFLLSYGPAAKVCVSIFKQTSEGAAEKEVVNTSTNKNHRAPEEGHAYDLPC-VRGSLTAPSQRQDILDRGFVPTFSMTSGKAAAASGSKQHSSARYVTVSSSSSALASEPPLGRLSSSSSSKVPGMGITTVGSELSGSFTSTSSSSSSARRDHGPPPWFWALCHHSGLWLAVEGRLPEGGAQRFSLSGARGEGGGKGQVSGPRASPLEGTFIHQSGKHHTFTYFVAHVSPEERLVVAFGDRICPANDKTVTSFLRTATSFLNDRIA 638
            +  +G CG  L E+VM++I  + FF AL   +    +Q LQ++++ +K +S  L VLDNL+SPFLLLAAAEKM+  G DL +SC  P  MY +V  DLGTLLQLF   +  +   LL+  ++VV +R+WLCRW  L             E P      +D +S    T+   +Q L    S+    L+ +    ++V +  K     LR  A+   H P              A G+   E+                R ++L + F HL+ K+P RF  +ADQVM LS+YNTE+LGL  +  S     SP    +D G     S NPY+ LI  FLLSYGP A++CV+IF  +S+G+   E   T      R  EE  +Y LP      + +  QR+    R F+P FSMTS +  AA+G ++  S     + SS S+  ++  + RL+S + S        + G +                 + G P WFW LC  SGLW A++GR+PEGGAQRFSL G     G K   +   ++P++GTFIHQSG+   ++YFVAH+SP ERLVVAFGDR  PA D+ V +FL  A S L D +A
Sbjct:    2 ESSSGKCGYDLIEIVMDLIVSSRFFAALATQDPHAAVQRLQNRLREQKPASGELSVLDNLISPFLLLAAAEKMHNLGVDLIDSCVKPEAMYADVDKDLGTLLQLFDTKSTQSLATLLRNMRLVVGLRLWLCRWEGLRKE----------EPPNFMLHWRDLVSAEAETVALSLQSLVLMNSYPYQFLSVV---AKLVALRAK----LLRWKAATAAHGP------------ASARGVAVGET----------------RLRVLIRQFYHLVYKLPFRFDKIADQVMDLSQYNTEILGLCGTLDSPFQYSSPRRDRADGGKTETSSCNPYMDLIVDFLLSYGPTAQICVAIF-LSSKGSGTGEASVT------RGLEENCSYALPVGPDEEIPSSPQRKRPDRRDFLPVFSMTSFQ--AATGGRRSDSEHPPPMLSSLSSSLADAAIPRLNSGAVSSF------SSGLQPDSRSQIAEDGKQCLVGEGGLPHWFWDLCRCSGLWPAIQGRIPEGGAQRFSLLGV----GSKEHGTCTPSAPMDGTFIHQSGRTMAYSYFVAHISPWERLVVAFGDRTRPATDRVVLTFLMAALSILKDSVA 537
The following BLAST results are available for this feature:
BLAST of NO08G02200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26582.11.500e-7837.50hypothetical protein Naga_100001g126 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02200NO08G02200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02200.1NO08G02200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02200.1.cds1NO08G02200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02200.1.cds2NO08G02200.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02200.1 ID=NO08G02200.1|Name=NO08G02200.1|organism=Nannochloropsis oceanica|type=mRNA|length=2262bp
GGGTTAGAGCTCTCTGGTCGCGTAAAACGCTTGGATACAATACGAGACGT
AAAGCTAAACGGCAGCAGGTTATTTTTGATTGCTCGCTCTTTCGTTCCCC
AGAAAGCGAAGCAGTCGAGGTCTGCGGCAGAAGCTTTCGCGCAATACCAA
GCCAACGCTGCCGCCAAACAATGTATGTGCTGCGTCCTTTAGGTGGCTGG
AATGGACTGTGCGCCTCAATTTTTGGGGTTATTAAGGAGGAGGTTGAATA
CAACACAAAATCCGCTCCCACACCACTTTACAGGATGGCCAAAGAGAGCG
ACGACGACAAACCAGACAAGGGAAAGGATGAAGCGGGCCTGTGCGGGCTG
GTCTTGGCCGAGGTGGTCATGGAGATCATTGAGAAGGCCGACTTCTTCCC
TGCGCTTGGCCAGTGCAATGCTTCCAAAGGCATACAGGGCCTACAACATC
AGGTCCAAGCGCGCAAGCTCTCATCGTTGCGACTGGACGTTCTCGACAAC
TTGGTATCTCCCTTCCTCCTACTTGCGGCGGCCGAAAAGATGTATTATTC
TGGCGCGGACCTGACGGAAAGCTGTGCGGGGCCACTGCCCATGTACGAAG
AGGTCCATTCAGACCTGGGCACGCTCCTGCAGCTTTTCCAACCACATGCC
AAATCGGCTTTTGTACCTTTGCTACAAATTGCACAAATCGTTGTCGAAAT
TCGGATATGGCTTTGTCGGTGGTACCTGCTTGACGACTCTTCTGCCGGCC
CCTTGTCCGCGGCCCCAATAGAGGGGCCGGAGGCACAAGCCGCCAGGCAA
GACCCACTGTCCACCTTGACAGCGCAGATGCAACGCTTACAAAAATGTAA
ATCGCATTGGAAAGGGCACCTCACGGATCTACTTCCTTGGATGGAGGTGG
TGCTCGTGGAAGGCAAGACGGTCGATATATGTTTACGAGCGCTCGCATCA
TTGAACCGTCACCCTCCCGACCTTCTTTCCGTCACCGTCCAGCTGCTCCG
CATGCGCAAGGCAATCGGCCTGTGGGAGGACGAATCAGTTATACAACCTC
CAGCTTCAGAGAGGGATGTCGTAATTAGGGCTCCGCGATACCAGCTTTTG
CGTCAGCTGTTCCAGCACCTCATCAATAAAATGCCTCTGCGCTTTCACGC
TGTGGCTGATCAGGTCATGCCCCTGTCCAAGTATAATACCGAGCTGTTGG
GTCTGCCCTCATCCTCTTCATCTCTTTCTCCTCACCATAGCAGCAGTGAC
AGTGGCAGCTCCAATCCCTATGTCGCTTTAATTGCACGCTTTCTGCTCTC
ATACGGCCCCGCCGCCAAGGTCTGTGTCAGCATCTTTAAACAGACCAGTG
AAGGAGCGGCGGAAAAGGAGGTGGTCAACACCTCCACCAACAAAAACCAC
CGGGCACCGGAAGAGGGTCATGCCTACGACTTGCCTTGCGTAAGGGGCTC
ACTGACAGCACCATCGCAGCGGCAGGATATCTTGGACCGTGGATTTGTGC
CAACCTTTTCCATGACTTCGGGTAAAGCTGCGGCGGCAAGCGGCAGCAAG
CAGCACAGCAGCGCGCGATACGTGACGGTATCGTCCTCATCTTCCGCCTT
GGCCTCCGAGCCCCCCTTAGGCCGCCTCTCATCTTCATCGTCATCAAAAG
TGCCTGGCATGGGAATCACGACGGTGGGTTCGGAGCTTAGTGGATCATTT
ACCTCCACCTCCTCATCTTCCTCGTCAGCACGTCGAGACCACGGCCCACC
ACCCTGGTTTTGGGCGCTGTGCCACCATAGCGGCTTGTGGTTGGCAGTAG
AAGGGCGATTGCCAGAGGGGGGAGCTCAGCGATTCTCCCTTTCGGGCGCC
AGGGGGGAAGGAGGGGGTAAAGGACAAGTTAGCGGACCCAGGGCGTCACC
TTTGGAAGGAACGTTCATCCATCAAAGCGGCAAACACCACACCTTCACCT
ACTTTGTTGCGCATGTCTCGCCGGAGGAACGACTGGTGGTGGCTTTTGGA
GACCGCATCTGTCCTGCAAATGACAAGACAGTGACTTCCTTTCTCAGGAC
GGCGACATCTTTCCTCAACGATAGAATTGCACACGGGGTGTAAATTTTGA
GTGCGGGCTTAATATTACAAATTTTCATGTAGAAGGGGACACCCAAAAAA
AAAAAAGAGTACAGAATAATCATATGCCCTGTTTTATTTTCATGGGTCGT
CAAATTTATTCAACTACATAGGGAAATAGTAAAATGATTATTATTCACTA
GATGGTGGACCG
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protein sequence of NO08G02200.1

>NO08G02200.1-protein ID=NO08G02200.1-protein|Name=NO08G02200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=641bp
MYVLRPLGGWNGLCASIFGVIKEEVEYNTKSAPTPLYRMAKESDDDKPDK
GKDEAGLCGLVLAEVVMEIIEKADFFPALGQCNASKGIQGLQHQVQARKL
SSLRLDVLDNLVSPFLLLAAAEKMYYSGADLTESCAGPLPMYEEVHSDLG
TLLQLFQPHAKSAFVPLLQIAQIVVEIRIWLCRWYLLDDSSAGPLSAAPI
EGPEAQAARQDPLSTLTAQMQRLQKCKSHWKGHLTDLLPWMEVVLVEGKT
VDICLRALASLNRHPPDLLSVTVQLLRMRKAIGLWEDESVIQPPASERDV
VIRAPRYQLLRQLFQHLINKMPLRFHAVADQVMPLSKYNTELLGLPSSSS
SLSPHHSSSDSGSSNPYVALIARFLLSYGPAAKVCVSIFKQTSEGAAEKE
VVNTSTNKNHRAPEEGHAYDLPCVRGSLTAPSQRQDILDRGFVPTFSMTS
GKAAAASGSKQHSSARYVTVSSSSSALASEPPLGRLSSSSSSKVPGMGIT
TVGSELSGSFTSTSSSSSSARRDHGPPPWFWALCHHSGLWLAVEGRLPEG
GAQRFSLSGARGEGGGKGQVSGPRASPLEGTFIHQSGKHHTFTYFVAHVS
PEERLVVAFGDRICPANDKTVTSFLRTATSFLNDRIAHGV*
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mRNA from alignment at chr8:648980..651393+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02200.1 ID=NO08G02200.1|Name=NO08G02200.1|organism=Nannochloropsis oceanica|type=mRNA|length=2414bp|location=Sequence derived from alignment at chr8:648980..651393+ (Nannochloropsis oceanica)
GGGTTAGAGCTCTCTGGTCGCGTAAAACGCTTGGATACAATACGAGACGT
AAAGCTAAACGGCAGCAGGTTATTTTTGATTGCTCGCTCTTTCGTTCCCC
AGAAAGCGAAGCAGTCGAGGTCTGCGGCAGAAGCTTTCGCGCAATACCAA
GCCAACGCTGCCGCCAAACAATGTATGTGCTGCGTCCTTTAGGTGGCTGG
AATGGACTGTGCGCCTCAATTTTTGGGGTTATTAAGGAGGAGGTTGAATA
CAACACAAAATCCGCTCCCACACCACTTTACAGGATGGCCAAAGAGAGCG
ACGACGACAAACCAGACAAGGGAAAGGATGAAGCGGGCCTGTGCGGGCTG
GTCTTGGCCGAGGTGGTCATGGAGATCATTGAGAAGGCCGACTTCTTCCC
TGCGCTTGGCCAGTGCAATGCTTCCAAAGGCATACAGGGCCTACAACATC
AGGTCCAAGCGCGCAAGCTCTCATCGTTGCGACTGGACGTTCTCGACAAC
TTGGTATCTCCCTTCCTCCTACTTGCGGCGGCCGAAAAGATGTAGGTTTT
TCGTAGGAAAATAGTTAGCTAGACGTCTGGGTACGTTGCCATCACAGAAG
ACTCCTTCCCCACCCACATCTAATCTTGCATTCGTAGCGAAGAAAAACAA
ATGGAATATTACATCGACTCACCTAAGATGTGTCCACGCACAGGTATTAT
TCTGGCGCGGACCTGACGGAAAGCTGTGCGGGGCCACTGCCCATGTACGA
AGAGGTCCATTCAGACCTGGGCACGCTCCTGCAGCTTTTCCAACCACATG
CCAAATCGGCTTTTGTACCTTTGCTACAAATTGCACAAATCGTTGTCGAA
ATTCGGATATGGCTTTGTCGGTGGTACCTGCTTGACGACTCTTCTGCCGG
CCCCTTGTCCGCGGCCCCAATAGAGGGGCCGGAGGCACAAGCCGCCAGGC
AAGACCCACTGTCCACCTTGACAGCGCAGATGCAACGCTTACAAAAATGT
AAATCGCATTGGAAAGGGCACCTCACGGATCTACTTCCTTGGATGGAGGT
GGTGCTCGTGGAAGGCAAGACGGTCGATATATGTTTACGAGCGCTCGCAT
CATTGAACCGTCACCCTCCCGACCTTCTTTCCGTCACCGTCCAGCTGCTC
CGCATGCGCAAGGCAATCGGCCTGTGGGAGGACGAATCAGTTATACAACC
TCCAGCTTCAGAGAGGGATGTCGTAATTAGGGCTCCGCGATACCAGCTTT
TGCGTCAGCTGTTCCAGCACCTCATCAATAAAATGCCTCTGCGCTTTCAC
GCTGTGGCTGATCAGGTCATGCCCCTGTCCAAGTATAATACCGAGCTGTT
GGGTCTGCCCTCATCCTCTTCATCTCTTTCTCCTCACCATAGCAGCAGTG
ACAGTGGCAGCTCCAATCCCTATGTCGCTTTAATTGCACGCTTTCTGCTC
TCATACGGCCCCGCCGCCAAGGTCTGTGTCAGCATCTTTAAACAGACCAG
TGAAGGAGCGGCGGAAAAGGAGGTGGTCAACACCTCCACCAACAAAAACC
ACCGGGCACCGGAAGAGGGTCATGCCTACGACTTGCCTTGCGTAAGGGGC
TCACTGACAGCACCATCGCAGCGGCAGGATATCTTGGACCGTGGATTTGT
GCCAACCTTTTCCATGACTTCGGGTAAAGCTGCGGCGGCAAGCGGCAGCA
AGCAGCACAGCAGCGCGCGATACGTGACGGTATCGTCCTCATCTTCCGCC
TTGGCCTCCGAGCCCCCCTTAGGCCGCCTCTCATCTTCATCGTCATCAAA
AGTGCCTGGCATGGGAATCACGACGGTGGGTTCGGAGCTTAGTGGATCAT
TTACCTCCACCTCCTCATCTTCCTCGTCAGCACGTCGAGACCACGGCCCA
CCACCCTGGTTTTGGGCGCTGTGCCACCATAGCGGCTTGTGGTTGGCAGT
AGAAGGGCGATTGCCAGAGGGGGGAGCTCAGCGATTCTCCCTTTCGGGCG
CCAGGGGGGAAGGAGGGGGTAAAGGACAAGTTAGCGGACCCAGGGCGTCA
CCTTTGGAAGGAACGTTCATCCATCAAAGCGGCAAACACCACACCTTCAC
CTACTTTGTTGCGCATGTCTCGCCGGAGGAACGACTGGTGGTGGCTTTTG
GAGACCGCATCTGTCCTGCAAATGACAAGACAGTGACTTCCTTTCTCAGG
ACGGCGACATCTTTCCTCAACGATAGAATTGCACACGGGGTGTAAATTTT
GAGTGCGGGCTTAATATTACAAATTTTCATGTAGAAGGGGACACCCAAAA
AAAAAAAAGAGTACAGAATAATCATATGCCCTGTTTTATTTTCATGGGTC
GTCAAATTTATTCAACTACATAGGGAAATAGTAAAATGATTATTATTCAC
TAGATGGTGGACCG
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Coding sequence (CDS) from alignment at chr8:648980..651393+

>NO08G02200.1 ID=NO08G02200.1|Name=NO08G02200.1|organism=Nannochloropsis oceanica|type=CDS|length=1923bp|location=Sequence derived from alignment at chr8:648980..651393+ (Nannochloropsis oceanica)
ATGTATGTGCTGCGTCCTTTAGGTGGCTGGAATGGACTGTGCGCCTCAAT
TTTTGGGGTTATTAAGGAGGAGGTTGAATACAACACAAAATCCGCTCCCA
CACCACTTTACAGGATGGCCAAAGAGAGCGACGACGACAAACCAGACAAG
GGAAAGGATGAAGCGGGCCTGTGCGGGCTGGTCTTGGCCGAGGTGGTCAT
GGAGATCATTGAGAAGGCCGACTTCTTCCCTGCGCTTGGCCAGTGCAATG
CTTCCAAAGGCATACAGGGCCTACAACATCAGGTCCAAGCGCGCAAGCTC
TCATCGTTGCGACTGGACGTTCTCGACAACTTGGTATCTCCCTTCCTCCT
ACTTGCGGCGGCCGAAAAGATGTATTATTCTGGCGCGGACCTGACGGAAA
GCTGTGCGGGGCCACTGCCCATGTACGAAGAGGTCCATTCAGACCTGGGC
ACGCTCCTGCAGCTTTTCCAACCACATGCCAAATCGGCTTTTGTACCTTT
GCTACAAATTGCACAAATCGTTGTCGAAATTCGGATATGGCTTTGTCGGT
GGTACCTGCTTGACGACTCTTCTGCCGGCCCCTTGTCCGCGGCCCCAATA
GAGGGGCCGGAGGCACAAGCCGCCAGGCAAGACCCACTGTCCACCTTGAC
AGCGCAGATGCAACGCTTACAAAAATGTAAATCGCATTGGAAAGGGCACC
TCACGGATCTACTTCCTTGGATGGAGGTGGTGCTCGTGGAAGGCAAGACG
GTCGATATATGTTTACGAGCGCTCGCATCATTGAACCGTCACCCTCCCGA
CCTTCTTTCCGTCACCGTCCAGCTGCTCCGCATGCGCAAGGCAATCGGCC
TGTGGGAGGACGAATCAGTTATACAACCTCCAGCTTCAGAGAGGGATGTC
GTAATTAGGGCTCCGCGATACCAGCTTTTGCGTCAGCTGTTCCAGCACCT
CATCAATAAAATGCCTCTGCGCTTTCACGCTGTGGCTGATCAGGTCATGC
CCCTGTCCAAGTATAATACCGAGCTGTTGGGTCTGCCCTCATCCTCTTCA
TCTCTTTCTCCTCACCATAGCAGCAGTGACAGTGGCAGCTCCAATCCCTA
TGTCGCTTTAATTGCACGCTTTCTGCTCTCATACGGCCCCGCCGCCAAGG
TCTGTGTCAGCATCTTTAAACAGACCAGTGAAGGAGCGGCGGAAAAGGAG
GTGGTCAACACCTCCACCAACAAAAACCACCGGGCACCGGAAGAGGGTCA
TGCCTACGACTTGCCTTGCGTAAGGGGCTCACTGACAGCACCATCGCAGC
GGCAGGATATCTTGGACCGTGGATTTGTGCCAACCTTTTCCATGACTTCG
GGTAAAGCTGCGGCGGCAAGCGGCAGCAAGCAGCACAGCAGCGCGCGATA
CGTGACGGTATCGTCCTCATCTTCCGCCTTGGCCTCCGAGCCCCCCTTAG
GCCGCCTCTCATCTTCATCGTCATCAAAAGTGCCTGGCATGGGAATCACG
ACGGTGGGTTCGGAGCTTAGTGGATCATTTACCTCCACCTCCTCATCTTC
CTCGTCAGCACGTCGAGACCACGGCCCACCACCCTGGTTTTGGGCGCTGT
GCCACCATAGCGGCTTGTGGTTGGCAGTAGAAGGGCGATTGCCAGAGGGG
GGAGCTCAGCGATTCTCCCTTTCGGGCGCCAGGGGGGAAGGAGGGGGTAA
AGGACAAGTTAGCGGACCCAGGGCGTCACCTTTGGAAGGAACGTTCATCC
ATCAAAGCGGCAAACACCACACCTTCACCTACTTTGTTGCGCATGTCTCG
CCGGAGGAACGACTGGTGGTGGCTTTTGGAGACCGCATCTGTCCTGCAAA
TGACAAGACAGTGACTTCCTTTCTCAGGACGGCGACATCTTTCCTCAACG
ATAGAATTGCACACGGGGTGTAA
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Synonyms
Publications