NO08G01670, NO08G01670 (gene) Nannochloropsis oceanica

Overview
NameNO08G01670
Unique NameNO08G01670
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2658
Alignment locationchr8:526478..529135 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:526478..529135 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO08G01670 vs. NCBI_GenBank
Match: EWM26761.1 (hypothetical protein Naga_100001g71 [Nannochloropsis gaditana])

HSP 1 Score: 616.7 bits (1589), Expect = 1.100e-172
Identity = 391/779 (50.19%), Postives = 485/779 (62.26%), Query Frame = 0 
Query:   86 TAHRLGRWERVVPASSRMMEYLGTPSSVGVFPTATAAXXXXXXXXXXXLTSALQLARFYLGRGDIKAARELLFALQDGQLGSSTTPQVPSVLLRPLFQQLLEAQFETKDASMAMEVATRMVQAGRHLTPELIVGLLKVCGGARIDILATWWAQQQRAIPWKDSRDICLALLDVLGAASPCAPQQATKTTAAAVVAAMQILPSVQDVWDALCYHGPPPASAYASRITGLAAVAKATTTAAAPSKDCMNLSGLLVSAVQDFAAQEEDVKARRLIFRVAAQAMLQQQDEGGSVSGLKQVLQSLPVSSTSSSSIAADTELYIHLLHLLSNARLDALDVLWSNVSQAFKVNPTNSGSSPLLPLSLILAYCRVALPSNSPTHTNQALTLLHEHFSTTTP-----------TTSGRNGPLLDLDDVALVLESLCSQDQKEEVQNLQKYLPPSLHSSPFATPLSRALLKCAALEGKPGRAIAYLHRLMGKDEXXXXXXXXXXXXXXXPADYEAALQALARVELSTATMRERELAQNPLGFLSWVLEEGLMKRTQTAAAXXXXXXXXXXXLTPTATHAALRILRRACEEDGEGGRVGGHREAFVQRAVALVSKLVAEGHETNDALCEDLVGVAVWGVSLHRAIGIVREMEQTLAAPASLARAHALLIKCLARRGDLGAAEEWLVRMNTLTGEGPSEGVLDAFALAYASEGNVPSGLSMLQGCYTQYGARPSAGAFRKVFERCLG-GGEGGGEDLYEAQRAVIIAQQLWAGEAEEGGEGRGFVEELEGR 853
            ++ +LGRWERVVPASSRM+EYL +    GV   +T+            LTSALQLARFYL R D KAA+ELLFALQDG LG  +  ++PSVL+RPL +QL+E Q E ++A +A+E A RMV+AG  L+P ++VGLL+ C G+R+++LA  WA++Q    W  ++ ICLALL+ LGA +    Q+ T      V  +   LP V +VW ALC HGPPP SAYA RI GLAA AKA  TA    K    +   L  AV+DFAA+ E+   R  + R A + +LQ    GG    +  VL+ L       +  A D +L+  LL  L  +RLDAL VLW +  ++        G +   PL L LA+CR AL S S     Q L+LL      +TP            + G+    LD+ DV  VLE+LC Q +  E + LQ  L   L  SP     +RALLKCAALEG+PGRAIA LHRL G+D                P+DYEAAL AL RV+ S+AT+REREL +NPLGFL+W L++      +  A            LTP AT  AL+ILRRACE   E GR    REAFVQRAVALVSKL A G ET+D LCE++VGVAVWG SLHRA+ +VREME+T AAPASLARA  LLI  LARRGD+GAAEEWLVRMNTLTG GPSE VLDAFA AYA + ++ SGLSMLQ C+ QYG RPS  AFR +FE CL   G+G   DL+EAQRA+ IA+QLW G  E  G G G VE+++ R
Sbjct:   85 SSQQLGRWERVVPASSRMIEYLKSSEMKGVSVDSTS--KILHANASSTLTSALQLARFYLQRRDFKAAQELLFALQDGHLGPPSARKIPSVLIRPLLKQLVEGQVEAQEAGLAVESAKRMVRAGGDLSPTVLVGLLRACRGSRMELLAPLWAERQP--EWAGNQSICLALLEALGAYA----QEGT------VPVSWSSLPHVDEVWRALCAHGPPPPSAYALRIMGLAASAKAAGTAGDVGKGQSEIPHTLRMAVRDFAAENEEPLQRGQVLRAAVETLLQ---VGGKAEDVADVLEVL----APPAGGAVDGKLHAALLRFLPPSRLDALQVLWDHACRSL-------GPAQNPPLGLRLAFCRHALHSPSRALVKQGLSLLRTPPVLSTPPHPASPGRSSSQSDGQAAGDLDMGDVTAVLEALCGQSRVVEARALQDALQRFL-PSPXXXXXARALLKCAALEGRPGRAIACLHRLKGED-VRENEGGGRGEDVTEPSDYEAALLALRRVQRSSATVRERELVENPLGFLAWALDDAGTSTVERRAG--------GPVLTPQATLVALQILRRACETSAETGR-AERREAFVQRAVALVSKLAAAGQETDDTLCEEMVGVAVWGGSLHRAVEVVREMEKTRAAPASLARAQTLLIISLARRGDVGAAEEWLVRMNTLTGHGPSEQVLDAFAEAYAGDRDLSSGLSMLQSCFNQYGNRPSVAAFRHLFELCLAMDGQG---DLFEAQRALTIAEQLWPG-GEGPGVGGGLVEDMKER 820
The following BLAST results are available for this feature:
BLAST of NO08G01670 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26761.11.100e-17250.19hypothetical protein Naga_100001g71 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008870NSK008870Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G01670.1NO08G01670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|564423gene_3495Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g71gene3889Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G01670.1NO08G01670.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G01670 ID=NO08G01670|Name=NO08G01670|organism=Nannochloropsis oceanica|type=gene|length=2658bp
ATGCGAAAGGGGTTTCCAGTCGCACCTTCCTTTCGGAGGCCCAGGGGGCG
AGGCCCAGCCCAAGCATCATCATCAGCATTGTCATCCTCCTCCTGCTTGC
TGTCTCTCCTCCTACGGCCCCTATCCACCACCAACTCGTCTTCATCGGTA
TCTTCGCCCTCCTCTTCTGTACGTGAAAAGAGGCGAGAAGCAACCTCCAG
CAGCGGCAGGAGGAAACGGCGGCTCGTCGAGGACATGGCGATCGCAAGCG
CGACGACTGCCCATCGGCTAGGGCGCTGGGAGCGGGTCGTGCCCGCTTCG
TCGCGCATGATGGAGTATCTGGGAACCCCCTCGTCTGTAGGGGTCTTCCC
GACTGCTACTGCCGCCGCTAGTGCCGCCTCCAACACCACCAATTCCACCC
TAACATCTGCATTGCAACTGGCCCGTTTCTACCTCGGTAGGGGTGATATC
AAAGCAGCACGCGAGCTGCTATTTGCCCTGCAAGACGGTCAGTTGGGCTC
ATCCACTACTCCCCAAGTACCTTCTGTCCTTCTCCGCCCCCTTTTTCAGC
AACTCCTCGAAGCTCAATTTGAGACTAAAGACGCATCGATGGCAATGGAG
GTAGCAACTCGCATGGTCCAGGCGGGGCGGCACCTCACCCCAGAATTGAT
CGTCGGACTTTTGAAGGTATGCGGAGGGGCACGAATCGACATCCTTGCCA
CCTGGTGGGCGCAACAGCAGCGGGCAATACCATGGAAAGATAGTCGTGAC
ATATGCCTCGCTCTCTTGGATGTGCTAGGCGCTGCTTCTCCTTGTGCTCC
TCAACAAGCAACCAAAACGACAGCAGCAGCGGTAGTAGCAGCCATGCAGA
TCCTGCCCAGCGTGCAAGATGTTTGGGATGCTCTTTGTTACCACGGCCCC
CCTCCAGCCTCCGCATATGCCTCGCGGATCACAGGGCTAGCAGCAGTAGC
AAAGGCAACGACAACAGCAGCAGCACCTTCAAAAGATTGTATGAATCTCT
CGGGGTTGCTCGTCTCTGCAGTCCAGGATTTTGCAGCGCAAGAAGAAGAT
GTCAAGGCCCGTCGTTTAATTTTCAGGGTAGCAGCTCAAGCCATGCTACA
GCAGCAGGATGAGGGCGGAAGCGTGAGTGGCCTCAAGCAGGTCCTCCAAT
CCCTCCCCGTTTCCTCGACCTCCTCCTCCTCAATAGCAGCCGACACAGAG
CTATACATTCATCTCCTCCACCTCCTCTCTAATGCCCGACTGGATGCACT
CGATGTGCTGTGGTCAAATGTGTCACAAGCCTTCAAAGTCAATCCCACGA
ACAGCGGCAGCTCCCCTCTCTTACCCCTCAGTCTCATTCTAGCCTACTGC
CGCGTCGCCCTCCCCAGTAACAGTCCCACGCACACCAACCAAGCACTAAC
CTTGCTGCACGAACACTTTTCTACCACCACACCGACCACCAGCGGAAGGA
ATGGTCCACTTCTAGATCTGGACGATGTGGCCCTCGTCTTGGAATCTCTC
TGTTCCCAAGACCAAAAAGAAGAAGTCCAAAATTTACAGAAATACCTTCC
TCCATCCCTTCACTCCTCCCCTTTTGCCACTCCCCTAAGTCGCGCTTTGT
TAAAATGTGCAGCACTTGAGGGGAAACCCGGTCGAGCCATTGCGTATTTA
CATCGACTCATGGGCAAGGACGAGGGTGGGAAGCAGGGAGGGAGGGAGGG
TGGGAGGGATGTGACCCAGCCGGCAGATTATGAGGCAGCGCTGCAGGCGT
TGGCACGCGTGGAGTTGTCGACAGCGACGATGAGAGAACGAGAATTAGCT
CAAAATCCTCTTGGTTTTCTCTCGTGGGTGCTTGAGGAGGGGTTGATGAA
AAGAACACAAACTGCTGCTGCTACTGCTGCTGTTGGCGGCGCAGAGGGTG
GTGCTCTTACCCCTACGGCGACGCATGCCGCCCTGCGCATCCTTCGACGG
GCTTGCGAGGAGGATGGGGAGGGTGGACGGGTAGGGGGTCACAGGGAGGC
ATTCGTACAGCGTGCGGTCGCCTTGGTGAGCAAGCTAGTCGCAGAGGGAC
ATGAGACTAACGATGCCTTATGCGAGGACCTTGTGGGTGTGGCAGTATGG
GGGGTCAGTTTACATCGTGCCATTGGAATAGTTAGGGAAATGGAGCAAAC
CCTTGCTGCGCCTGCTTCTTTGGCGCGGGCACACGCCCTCTTGATCAAGT
GCTTGGCCCGAAGGGGGGATTTGGGAGCAGCGGAGGAGTGGTTGGTAAGG
ATGAATACCTTGACGGGGGAGGGACCGAGCGAGGGCGTGCTGGATGCCTT
TGCCCTTGCGTATGCCTCAGAAGGGAATGTCCCTTCGGGGTTGTCTATGT
TACAGGGGTGTTATACTCAATATGGAGCCAGGCCATCGGCAGGGGCTTTC
AGGAAAGTGTTTGAAAGGTGCCTGGGAGGGGGAGAGGGAGGGGGAGAGGA
TCTCTATGAGGCTCAACGGGCCGTAATTATTGCGCAACAGCTTTGGGCAG
GAGAGGCAGAGGAAGGAGGGGAGGGCAGGGGCTTTGTTGAAGAGCTGGAG
GGGCGGTTGACAATGGCTAAGGCGGAAGCGGCGGCGTCGGCGGTGCCCAC
GATGCCTGTTGTAGAAGCAGCGGCGGTGACGGCAGCAGACAAGCATGAAT
CACCATAA
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protein sequence of NO08G01670.1

>NO08G01670.1-protein ID=NO08G01670.1-protein|Name=NO08G01670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=886bp
MRKGFPVAPSFRRPRGRGPAQASSSALSSSSCLLSLLLRPLSTTNSSSSV
SSPSSSVREKRREATSSSGRRKRRLVEDMAIASATTAHRLGRWERVVPAS
SRMMEYLGTPSSVGVFPTATAAASAASNTTNSTLTSALQLARFYLGRGDI
KAARELLFALQDGQLGSSTTPQVPSVLLRPLFQQLLEAQFETKDASMAME
VATRMVQAGRHLTPELIVGLLKVCGGARIDILATWWAQQQRAIPWKDSRD
ICLALLDVLGAASPCAPQQATKTTAAAVVAAMQILPSVQDVWDALCYHGP
PPASAYASRITGLAAVAKATTTAAAPSKDCMNLSGLLVSAVQDFAAQEED
VKARRLIFRVAAQAMLQQQDEGGSVSGLKQVLQSLPVSSTSSSSIAADTE
LYIHLLHLLSNARLDALDVLWSNVSQAFKVNPTNSGSSPLLPLSLILAYC
RVALPSNSPTHTNQALTLLHEHFSTTTPTTSGRNGPLLDLDDVALVLESL
CSQDQKEEVQNLQKYLPPSLHSSPFATPLSRALLKCAALEGKPGRAIAYL
HRLMGKDEGGKQGGREGGRDVTQPADYEAALQALARVELSTATMRERELA
QNPLGFLSWVLEEGLMKRTQTAAATAAVGGAEGGALTPTATHAALRILRR
ACEEDGEGGRVGGHREAFVQRAVALVSKLVAEGHETNDALCEDLVGVAVW
GVSLHRAIGIVREMEQTLAAPASLARAHALLIKCLARRGDLGAAEEWLVR
MNTLTGEGPSEGVLDAFALAYASEGNVPSGLSMLQGCYTQYGARPSAGAF
RKVFERCLGGGEGGGEDLYEAQRAVIIAQQLWAGEAEEGGEGRGFVEELE
GRLTMAKAEAAASAVPTMPVVEAAAVTAADKHESP*
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Synonyms
Publications