NO08G01610, NO08G01610 (gene) Nannochloropsis oceanica

Overview
NameNO08G01610
Unique NameNO08G01610
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3414
Alignment locationchr8:504383..507796 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:504383..507796 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019251DUF2231_TM
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO08G01610 vs. NCBI_GenBank
Match: EWM26696.1 (protein of unknown function DUF2231, transmembrane [Nannochloropsis gaditana])

HSP 1 Score: 103.6 bits (257), Expect = 3.900e-19
Identity = 48/69 (69.57%), Postives = 55/69 (79.71%), Query Frame = 0 
Query:   29 EETTQTANAHMTLNVMVLVLQVVNLSFRGYAKDNHYWRHGWILSLVSVVLIAISSWLGSTLVYTHKMGF 98
            EE  QTA AHM LN  V++LQV+NLS+RG AK NHYWR+GWI SLVSV+L+AIS WLG  LVY H MGF
Sbjct:   89 EEVKQTATAHMLLNAGVVMLQVINLSYRGRAKGNHYWRNGWIFSLVSVLLLAISGWLGQDLVYKHGMGF 157
The following BLAST results are available for this feature:
BLAST of NO08G01610 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26696.13.900e-1969.57protein of unknown function DUF2231, transmembrane... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008884NSK008884Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G01610.1NO08G01610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582341gene_3488Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g63gene3896Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G01610.1NO08G01610.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G01610 ID=NO08G01610|Name=NO08G01610|organism=Nannochloropsis oceanica|type=gene|length=3414bp
AAAACACAGAACGCCTAAGGAAAACATGCCGTCCAAAGCAAACATCTACG
GCCACCCCATTCACCCAATGCTCATAGATTTCCCGATTGTCTGCTTCATT
TTGGCTTTTTCTGCTGATGTCGTGTACGAAGCTGGGTTGGCAGGCTCTGA
CTGGTCCCAGTTTGCGTACATTTTGCTCATTGTCGGCATCGCGACGGCCA
TTGCAGCGGCTATTGCGGGTCTGGTCGAATATTCCATTATTTTGTACGTA
TGAAAGCGTATGGCTTCGAAGACTCTTGATTTGCGGTCCCAAGAGTCACT
CAAATCATCCTTATGTCGCTTTTCCGAACACATTCCAAGCGACGAGGAGA
CCACGCAGACGGCCAATGCACATATGACCTTAAACGTGATGGTCCTTGTC
TTGCAAGTAGTCAACCTTTCCTTTCGTGGATATGCCAAGGACAATCATTA
CTGGCGGCACGGTTGGATCTTGAGCTTGGTAAGCGTCGTCCTCATTGCTA
TCAGCTCGTGGCTCGGGAGCACGCTGGTATACACACACAAGATGGGCgta
agtatgaagtgggacggaccatcggccacatccattctctttcatatgta
actgtatgtttagtgattgtatttcatattttactcgtgattaaaaaagc
gtcaaatctattcttccccatccatcccgccactgcctctttttttctgt
cgggtattcaacctttcgaaaacctcatcttattcttgacagTTCCGCAA
CCCGGTCCGTCCAAATAACTTCTGAAATTACACTCGACAGAGTGCCATGC
CTCGCCCGCCGTTGGCTGGTCAGCGACGAGGAGGTTTGGTACCGATTTGA
GGATGGATGGTGGTAGAGGGGTAGGAAGGGAGGAAGGGAGAGGAATGAGA
GAAGGATGAAATGCGATACCTTTCAAGGAAAGATATGCACGGACGTGCAG
GTGATAATTAAGAGCAGATTATGGAAAAGGGGGATAGAACGGACATGCAC
AGACGGACACAGAATCAAAAACCACAGAATCAAAGACATTAGCCTGAAAC
AATTTCTTTTGTTGTCTTTAAATGACTGCTGTCGACACATTATTTGGAGA
TATCTGGTCTATTTTTTTTAATATCCATGTGATGAGATTGTTCGTGAAGC
ATGAAGGTAACTTTTTCTGACAGCCCTACGGATATATTAAAAATTCGCGC
AATTGCTTTCTAGGCTCGCAGGAAAAGCCTGCTTCTCATTTACATTTTTT
GCATCGCATGCTAGTACCACCACCGGCAGGGCAATCACCTACCGTACATT
TTTGAAACCATCGGAATGCCCAGGATGCCACAGCCGGCCTTCTGAGAAAC
ATTCTCGCCACCTCCTCCCCACCAAAAAAATTAGACCGCACCCACCGGGA
CCTGCTTCTCCCCCCCATTCCTTCCCCCCTCCGTGGACATAATCAACGGC
ACCGCCTCAATGGACCCTGCCCCCTTCAATACCTCCTTGCTATCATACTC
GTCCATCTCCATCTGATACCCTAGCTTAAAAAACTCGTCCGCGCCCAACG
GCTTGTCAACCGCCCGCATCGGCGCCTGCTGGTAGAACGACCCCCCCACC
AAACAAAGCACCAACGCCGAAATCCCCAGCGGCGACGCATGCTTATCCCA
AATGAACACATTCAAGAGAATTGTGATAAACTTATTAATAACCCCCACCA
GCGTAAACGTGGTCGCCGACACCAAGCTCCTACAACTCCACCCCGTGTAC
CCTATCAACGTCCCCACGACAGAACTAACCGCCAACATGACCAAGCCCAT
CTTCGTCCACATCCACGCTTCCCCACCCCCTAACCCACTCCCTCCCTCCA
TCAAACTAAAGTCCTGGAAATCTCCCATTAGATAACCCAGGCAAAACATC
GGCGCGACACTCAAAAAATTCGTGTAAAAAGTAGGGCCCCACATGCTGTT
AAACCTCACTCCACTCGTGATCTTCTTCCCGTACGTCATCTCGAAACAGA
TGGTCACAAAATATAGAATCGCCCACGAATATGCCGCCAGCCCATCCATC
TTAAACTGGCTATCGGTTTGGACATAACCGTAGGCACCCGCCGCAATCGT
CAACAGAGCCAAGCACGACCGACGGGAAGGCAACTCCCGCCCCAGGAAAA
TGAAGTCACACAACGAGACAGCTAAAGGGGTACAGGACCGAAAGATAATG
ACCGTCTCAACGTTCGAGTGAGAAAGGGCGCGCATGTTGCAGTACACGCC
CAAGACGAAGGCGACAGTGTAGACAAGGTAGGGTTTGACTCTGCTGCTTT
CCAGAGGATCGGGGGGGACGATGTGCAGGCGTTGAAGGAGGAGGATGATG
CCAACGGCGAAGAGTAGTTGGACAACTGTCACGAAAGACGGGACGGGCAC
TGTTTGTGTAGGTGGAGAAAGGAGAGAGAGTGAAAATGAGGTACGAGGTT
GGTAAATCGTGCGCCGACGCGGGGTGGGCGAAGTACTGAAGCTCGAGTGT
GGCAGGCCCCAGTCTCATAAGCGTCCTCGTGCGTCTTGATACCCTTTTAT
CACCCAACTATCTGTCACTCTGTCCTCCGTCTCCGCCTTTTTCTCCCCGT
ATTTTCCTCGAACACGAGACATACCGTAGTACATGGCCAGTTTGTTGAAC
AGAAGCATGGTCCCGCTGCATACCGAGTAGGAGGCTACGGCAGCAGGCAC
CCGCAGATGCGGTGGCAGGAAATCCATTTTTTTAGAGTGTCGAATGGTTG
CGCGTGTAACCTGTCTTTTCGTTTGTGGTTGGGGATCGTGTGGAAATGAG
TGAAGAGAAAATGGGTGCCCGGGTGGTATATGACATTGAACGGCTGATGC
GCCACTATCCGGGAAATGAGACCCCATTCTCAAGCTTTTATATGTGGATA
TGTGTGATGGTATGTACTATGGATTTAGAGGGTCGTAGCATCCTTTGGGC
CTTGAAAGCCCGCAGTTTTTGATTTCAATCAAGGCCCATTTTGGTGTTGA
GTGGGCTCGTCGACGATGCAGACACGGTCACTTGGTCGGGAATCCTTGAA
TGGGAATCGCCAACGTGGTTTTGATACGATCCGGCTGACGGCATGCAATG
AGCACTGACATTTGGGTGGAAGCGAAAGCCGTACACAGGGAAGGGGCGCC
GTGTACTGCTTCCGCTCGGCGGCCCACCTTCGCAGGGCATTATCGGGGCA
GAGGCCCAGAACCTTCAAAGATGCTTTTACAAAACACATACAAACTTCTT
GAAAGAATTATAAACCTATGCTGGCAATGATACATGATACCGTCCTGTGA
AATTTGCACCAAGTATGCAGCATGAGTAGCATGGCACATAGGTTGCACGT
CTTGGTAGAGCCACCAAGTGCCAATCCGCAGTGAACTAACTTACTGTAGC
GATGGGGACGAGAA
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protein sequence of NO08G01610.1

>NO08G01610.1-protein ID=NO08G01610.1-protein|Name=NO08G01610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
MASKTLDLRSQESLKSSLCRFSEHIPSDEETTQTANAHMTLNVMVLVLQV
VNLSFRGYAKDNHYWRHGWILSLVSVVLIAISSWLGSTLVYTHKMGFRNP
VRPNNF*
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Synonyms
Publications