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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr8 | genome | chr8:504383..507796 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G01610.1 vs.
Match: EWM26696.1 (protein of unknown function DUF2231, transmembrane [Nannochloropsis gaditana]) HSP 1 Score: 103.6 bits (257), Expect = 3.900e-19 Identity = 48/69 (69.57%), Postives = 55/69 (79.71%), Query Frame = 0
Query: 29 EETTQTANAHMTLNVMVLVLQVVNLSFRGYAKDNHYWRHGWILSLVSVVLIAISSWLGSTLVYTHKMGF 98
EE QTA AHM LN V++LQV+NLS+RG AK NHYWR+GWI SLVSV+L+AIS WLG LVY H MGF
Sbjct: 89 EEVKQTATAHMLLNAGVVMLQVINLSYRGRAKGNHYWRNGWIFSLVSVLLLAISGWLGQDLVYKHGMGF 157
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G01610.1 ID=NO08G01610.1|Name=NO08G01610.1|organism=Nannochloropsis oceanica|type=mRNA|length=3219bp
AAAACACAGAACGCCTAAGGAAAACATGCCGTCCAAAGCAAACATCTACG
GCCACCCCATTCACCCAATGCTCATAGATTTCCCGATTGTCTGCTTCATT
TTGGCTTTTTCTGCTGATGTCGTGTACGAAGCTGGGTTGGCAGGCTCTGA
CTGGTCCCAGTTTGCGTACATTTTGCTCATTGTCGGCATCGCGACGGCCA
TTGCAGCGGCTATTGCGGGTCTGGTCGAATATTCCATTATTTTGTACGTA
TGAAAGCGTATGGCTTCGAAGACTCTTGATTTGCGGTCCCAAGAGTCACT
CAAATCATCCTTATGTCGCTTTTCCGAACACATTCCAAGCGACGAGGAGA
CCACGCAGACGGCCAATGCACATATGACCTTAAACGTGATGGTCCTTGTC
TTGCAAGTAGTCAACCTTTCCTTTCGTGGATATGCCAAGGACAATCATTA
CTGGCGGCACGGTTGGATCTTGAGCTTGGTAAGCGTCGTCCTCATTGCTA
TCAGCTCGTGGCTCGGGAGCACGCTGGTATACACACACAAGATGGGCTTC
CGCAACCCGGTCCGTCCAAATAACTTCTGAAATTACACTCGACAGAGTGC
CATGCCTCGCCCGCCGTTGGCTGGTCAGCGACGAGGAGGTTTGGTACCGA
TTTGAGGATGGATGGTGGTAGAGGGGTAGGAAGGGAGGAAGGGAGAGGAA
TGAGAGAAGGATGAAATGCGATACCTTTCAAGGAAAGATATGCACGGACG
TGCAGGTGATAATTAAGAGCAGATTATGGAAAAGGGGGATAGAACGGACA
TGCACAGACGGACACAGAATCAAAAACCACAGAATCAAAGACATTAGCCT
GAAACAATTTCTTTTGTTGTCTTTAAATGACTGCTGTCGACACATTATTT
GGAGATATCTGGTCTATTTTTTTTAATATCCATGTGATGAGATTGTTCGT
GAAGCATGAAGGTAACTTTTTCTGACAGCCCTACGGATATATTAAAAATT
CGCGCAATTGCTTTCTAGGCTCGCAGGAAAAGCCTGCTTCTCATTTACAT
TTTTTGCATCGCATGCTAGTACCACCACCGGCAGGGCAATCACCTACCGT
ACATTTTTGAAACCATCGGAATGCCCAGGATGCCACAGCCGGCCTTCTGA
GAAACATTCTCGCCACCTCCTCCCCACCAAAAAAATTAGACCGCACCCAC
CGGGACCTGCTTCTCCCCCCCATTCCTTCCCCCCTCCGTGGACATAATCA
ACGGCACCGCCTCAATGGACCCTGCCCCCTTCAATACCTCCTTGCTATCA
TACTCGTCCATCTCCATCTGATACCCTAGCTTAAAAAACTCGTCCGCGCC
CAACGGCTTGTCAACCGCCCGCATCGGCGCCTGCTGGTAGAACGACCCCC
CCACCAAACAAAGCACCAACGCCGAAATCCCCAGCGGCGACGCATGCTTA
TCCCAAATGAACACATTCAAGAGAATTGTGATAAACTTATTAATAACCCC
CACCAGCGTAAACGTGGTCGCCGACACCAAGCTCCTACAACTCCACCCCG
TGTACCCTATCAACGTCCCCACGACAGAACTAACCGCCAACATGACCAAG
CCCATCTTCGTCCACATCCACGCTTCCCCACCCCCTAACCCACTCCCTCC
CTCCATCAAACTAAAGTCCTGGAAATCTCCCATTAGATAACCCAGGCAAA
ACATCGGCGCGACACTCAAAAAATTCGTGTAAAAAGTAGGGCCCCACATG
CTGTTAAACCTCACTCCACTCGTGATCTTCTTCCCGTACGTCATCTCGAA
ACAGATGGTCACAAAATATAGAATCGCCCACGAATATGCCGCCAGCCCAT
CCATCTTAAACTGGCTATCGGTTTGGACATAACCGTAGGCACCCGCCGCA
ATCGTCAACAGAGCCAAGCACGACCGACGGGAAGGCAACTCCCGCCCCAG
GAAAATGAAGTCACACAACGAGACAGCTAAAGGGGTACAGGACCGAAAGA
TAATGACCGTCTCAACGTTCGAGTGAGAAAGGGCGCGCATGTTGCAGTAC
ACGCCCAAGACGAAGGCGACAGTGTAGACAAGGTAGGGTTTGACTCTGCT
GCTTTCCAGAGGATCGGGGGGGACGATGTGCAGGCGTTGAAGGAGGAGGA
TGATGCCAACGGCGAAGAGTAGTTGGACAACTGTCACGAAAGACGGGACG
GGCACTGTTTGTGTAGGTGGAGAAAGGAGAGAGAGTGAAAATGAGGTACG
AGGTTGGTAAATCGTGCGCCGACGCGGGGTGGGCGAAGTACTGAAGCTCG
AGTGTGGCAGGCCCCAGTCTCATAAGCGTCCTCGTGCGTCTTGATACCCT
TTTATCACCCAACTATCTGTCACTCTGTCCTCCGTCTCCGCCTTTTTCTC
CCCGTATTTTCCTCGAACACGAGACATACCGTAGTACATGGCCAGTTTGT
TGAACAGAAGCATGGTCCCGCTGCATACCGAGTAGGAGGCTACGGCAGCA
GGCACCCGCAGATGCGGTGGCAGGAAATCCATTTTTTTAGAGTGTCGAAT
GGTTGCGCGTGTAACCTGTCTTTTCGTTTGTGGTTGGGGATCGTGTGGAA
ATGAGTGAAGAGAAAATGGGTGCCCGGGTGGTATATGACATTGAACGGCT
GATGCGCCACTATCCGGGAAATGAGACCCCATTCTCAAGCTTTTATATGT
GGATATGTGTGATGGTATGTACTATGGATTTAGAGGGTCGTAGCATCCTT
TGGGCCTTGAAAGCCCGCAGTTTTTGATTTCAATCAAGGCCCATTTTGGT
GTTGAGTGGGCTCGTCGACGATGCAGACACGGTCACTTGGTCGGGAATCC
TTGAATGGGAATCGCCAACGTGGTTTTGATACGATCCGGCTGACGGCATG
CAATGAGCACTGACATTTGGGTGGAAGCGAAAGCCGTACACAGGGAAGGG
GCGCCGTGTACTGCTTCCGCTCGGCGGCCCACCTTCGCAGGGCATTATCG
GGGCAGAGGCCCAGAACCTTCAAAGATGCTTTTACAAAACACATACAAAC
TTCTTGAAAGAATTATAAACCTATGCTGGCAATGATACATGATACCGTCC
TGTGAAATTTGCACCAAGTATGCAGCATGAGTAGCATGGCACATAGGTTG
CACGTCTTGGTAGAGCCACCAAGTGCCAATCCGCAGTGAACTAACTTACT
GTAGCGATGGGGACGAGAA back to topprotein sequence of NO08G01610.1 >NO08G01610.1-protein ID=NO08G01610.1-protein|Name=NO08G01610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
MASKTLDLRSQESLKSSLCRFSEHIPSDEETTQTANAHMTLNVMVLVLQV
VNLSFRGYAKDNHYWRHGWILSLVSVVLIAISSWLGSTLVYTHKMGFRNP
VRPNNF* back to topmRNA from alignment at chr8:504383..507796+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G01610.1 ID=NO08G01610.1|Name=NO08G01610.1|organism=Nannochloropsis oceanica|type=mRNA|length=3414bp|location=Sequence derived from alignment at chr8:504383..507796+ (Nannochloropsis oceanica)
AAAACACAGAACGCCTAAGGAAAACATGCCGTCCAAAGCAAACATCTACG
GCCACCCCATTCACCCAATGCTCATAGATTTCCCGATTGTCTGCTTCATT
TTGGCTTTTTCTGCTGATGTCGTGTACGAAGCTGGGTTGGCAGGCTCTGA
CTGGTCCCAGTTTGCGTACATTTTGCTCATTGTCGGCATCGCGACGGCCA
TTGCAGCGGCTATTGCGGGTCTGGTCGAATATTCCATTATTTTGTACGTA
TGAAAGCGTATGGCTTCGAAGACTCTTGATTTGCGGTCCCAAGAGTCACT
CAAATCATCCTTATGTCGCTTTTCCGAACACATTCCAAGCGACGAGGAGA
CCACGCAGACGGCCAATGCACATATGACCTTAAACGTGATGGTCCTTGTC
TTGCAAGTAGTCAACCTTTCCTTTCGTGGATATGCCAAGGACAATCATTA
CTGGCGGCACGGTTGGATCTTGAGCTTGGTAAGCGTCGTCCTCATTGCTA
TCAGCTCGTGGCTCGGGAGCACGCTGGTATACACACACAAGATGGGCGTA
AGTATGAAGTGGGACGGACCATCGGCCACATCCATTCTCTTTCATATGTA
ACTGTATGTTTAGTGATTGTATTTCATATTTTACTCGTGATTAAAAAAGC
GTCAAATCTATTCTTCCCCATCCATCCCGCCACTGCCTCTTTTTTTCTGT
CGGGTATTCAACCTTTCGAAAACCTCATCTTATTCTTGACAGTTCCGCAA
CCCGGTCCGTCCAAATAACTTCTGAAATTACACTCGACAGAGTGCCATGC
CTCGCCCGCCGTTGGCTGGTCAGCGACGAGGAGGTTTGGTACCGATTTGA
GGATGGATGGTGGTAGAGGGGTAGGAAGGGAGGAAGGGAGAGGAATGAGA
GAAGGATGAAATGCGATACCTTTCAAGGAAAGATATGCACGGACGTGCAG
GTGATAATTAAGAGCAGATTATGGAAAAGGGGGATAGAACGGACATGCAC
AGACGGACACAGAATCAAAAACCACAGAATCAAAGACATTAGCCTGAAAC
AATTTCTTTTGTTGTCTTTAAATGACTGCTGTCGACACATTATTTGGAGA
TATCTGGTCTATTTTTTTTAATATCCATGTGATGAGATTGTTCGTGAAGC
ATGAAGGTAACTTTTTCTGACAGCCCTACGGATATATTAAAAATTCGCGC
AATTGCTTTCTAGGCTCGCAGGAAAAGCCTGCTTCTCATTTACATTTTTT
GCATCGCATGCTAGTACCACCACCGGCAGGGCAATCACCTACCGTACATT
TTTGAAACCATCGGAATGCCCAGGATGCCACAGCCGGCCTTCTGAGAAAC
ATTCTCGCCACCTCCTCCCCACCAAAAAAATTAGACCGCACCCACCGGGA
CCTGCTTCTCCCCCCCATTCCTTCCCCCCTCCGTGGACATAATCAACGGC
ACCGCCTCAATGGACCCTGCCCCCTTCAATACCTCCTTGCTATCATACTC
GTCCATCTCCATCTGATACCCTAGCTTAAAAAACTCGTCCGCGCCCAACG
GCTTGTCAACCGCCCGCATCGGCGCCTGCTGGTAGAACGACCCCCCCACC
AAACAAAGCACCAACGCCGAAATCCCCAGCGGCGACGCATGCTTATCCCA
AATGAACACATTCAAGAGAATTGTGATAAACTTATTAATAACCCCCACCA
GCGTAAACGTGGTCGCCGACACCAAGCTCCTACAACTCCACCCCGTGTAC
CCTATCAACGTCCCCACGACAGAACTAACCGCCAACATGACCAAGCCCAT
CTTCGTCCACATCCACGCTTCCCCACCCCCTAACCCACTCCCTCCCTCCA
TCAAACTAAAGTCCTGGAAATCTCCCATTAGATAACCCAGGCAAAACATC
GGCGCGACACTCAAAAAATTCGTGTAAAAAGTAGGGCCCCACATGCTGTT
AAACCTCACTCCACTCGTGATCTTCTTCCCGTACGTCATCTCGAAACAGA
TGGTCACAAAATATAGAATCGCCCACGAATATGCCGCCAGCCCATCCATC
TTAAACTGGCTATCGGTTTGGACATAACCGTAGGCACCCGCCGCAATCGT
CAACAGAGCCAAGCACGACCGACGGGAAGGCAACTCCCGCCCCAGGAAAA
TGAAGTCACACAACGAGACAGCTAAAGGGGTACAGGACCGAAAGATAATG
ACCGTCTCAACGTTCGAGTGAGAAAGGGCGCGCATGTTGCAGTACACGCC
CAAGACGAAGGCGACAGTGTAGACAAGGTAGGGTTTGACTCTGCTGCTTT
CCAGAGGATCGGGGGGGACGATGTGCAGGCGTTGAAGGAGGAGGATGATG
CCAACGGCGAAGAGTAGTTGGACAACTGTCACGAAAGACGGGACGGGCAC
TGTTTGTGTAGGTGGAGAAAGGAGAGAGAGTGAAAATGAGGTACGAGGTT
GGTAAATCGTGCGCCGACGCGGGGTGGGCGAAGTACTGAAGCTCGAGTGT
GGCAGGCCCCAGTCTCATAAGCGTCCTCGTGCGTCTTGATACCCTTTTAT
CACCCAACTATCTGTCACTCTGTCCTCCGTCTCCGCCTTTTTCTCCCCGT
ATTTTCCTCGAACACGAGACATACCGTAGTACATGGCCAGTTTGTTGAAC
AGAAGCATGGTCCCGCTGCATACCGAGTAGGAGGCTACGGCAGCAGGCAC
CCGCAGATGCGGTGGCAGGAAATCCATTTTTTTAGAGTGTCGAATGGTTG
CGCGTGTAACCTGTCTTTTCGTTTGTGGTTGGGGATCGTGTGGAAATGAG
TGAAGAGAAAATGGGTGCCCGGGTGGTATATGACATTGAACGGCTGATGC
GCCACTATCCGGGAAATGAGACCCCATTCTCAAGCTTTTATATGTGGATA
TGTGTGATGGTATGTACTATGGATTTAGAGGGTCGTAGCATCCTTTGGGC
CTTGAAAGCCCGCAGTTTTTGATTTCAATCAAGGCCCATTTTGGTGTTGA
GTGGGCTCGTCGACGATGCAGACACGGTCACTTGGTCGGGAATCCTTGAA
TGGGAATCGCCAACGTGGTTTTGATACGATCCGGCTGACGGCATGCAATG
AGCACTGACATTTGGGTGGAAGCGAAAGCCGTACACAGGGAAGGGGCGCC
GTGTACTGCTTCCGCTCGGCGGCCCACCTTCGCAGGGCATTATCGGGGCA
GAGGCCCAGAACCTTCAAAGATGCTTTTACAAAACACATACAAACTTCTT
GAAAGAATTATAAACCTATGCTGGCAATGATACATGATACCGTCCTGTGA
AATTTGCACCAAGTATGCAGCATGAGTAGCATGGCACATAGGTTGCACGT
CTTGGTAGAGCCACCAAGTGCCAATCCGCAGTGAACTAACTTACTGTAGC
GATGGGGACGAGAA back to topCoding sequence (CDS) from alignment at chr8:504383..507796+ >NO08G01610.1 ID=NO08G01610.1|Name=NO08G01610.1|organism=Nannochloropsis oceanica|type=CDS|length=321bp|location=Sequence derived from alignment at chr8:504383..507796+ (Nannochloropsis oceanica)
ATGGCTTCGAAGACTCTTGATTTGCGGTCCCAAGAGTCACTCAAATCATC
CTTATGTCGCTTTTCCGAACACATTCCAAGCGACGAGGAGACCACGCAGA
CGGCCAATGCACATATGACCTTAAACGTGATGGTCCTTGTCTTGCAAGTA
GTCAACCTTTCCTTTCGTGGATATGCCAAGGACAATCATTACTGGCGGCA
CGGTTGGATCTTGAGCTTGGTAAGCGTCGTCCTCATTGCTATCAGCTCGT
GGCTCGGGAGCACGCTGGTATACACACACAAGATGGGCTTCCGCAACCCG
GTCCGTCCAAATAACTTCTGA back to top
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