NO08G01120, NO08G01120 (gene) Nannochloropsis oceanica

Overview
NameNO08G01120
Unique NameNO08G01120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1053
Alignment locationchr8:354125..355177 +

Link to JBrowse

Properties
Property NameValue
DescriptionMannosyltransferase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:354125..355177 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016740transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR016193Cytidine_deaminase-like
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005783endoplasmic reticulum
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Homology
BLAST of NO08G01120 vs. NCBI_GenBank
Match: KUF99019.1 (hypothetical protein AM588_10008357 [Phytophthora nicotianae])

HSP 1 Score: 161.0 bits (406), Expect = 6.100e-36
Identity = 103/299 (34.45%), Postives = 148/299 (49.50%), Query Frame = 0
Query:   42 PYQSHFRVIALVVYKDGEGGV-SHVCGTNAEPCTIGGSICAERAALVSLRHASQPVKLLALYVVTDEARNALFPGILCKEF-LSSMADDDFTIIVANAETTDVHFKKLGELYPFASAYRHTDRNELVATGQALAR--------------------------KIQMPSTESHAAILYEEVFKVTARDDRDNVHPIRYAAGVLFADGTRVVAWQKKGIEYGTTIDAMVQLAHALESNKSQGLASPILLLQCDQFGILHAPSGHARGFLMEYGYEQVPLLVHDIRTGELLRITVGATAPGRP 313
            P  S FRV+AL  Y+D +G     V G NAE   IGG+ CAERAA+  L+    PV+ +    +  ++   L PG LC+EF LSS   ++ T  V+ A         L ELYPF S Y    R++++   +                              ++Q+     +   +Y +    T +D RD++ P+RYAAG  F+DG   V WQ K +EYG+++DA+ +L   +E+   Q    P  L+Q DQFGILHAP   AR +  E+G+  VP+LVHD   G L RI +       P
Sbjct:   29 PLLSGFRVLALFSYEDLDGQTDKFVIGANAECANIGGATCAERAAMAQLQ--LLPVRRVRKIYIVSDSPQCLTPGTLCREFLLSSPLVEESTPFVSRAAKCRPCVTTLAELYPFPSLYDRVPRSQVLPFARKFCSRFATDLHEEGENADLQQENENVTPFVRLQLSRMTPNEKEVYLKALAATEKDARDDLFPLRYAAGTKFSDGEVRVTWQHKTLEYGSSLDAVSKLIPFVEA--KQNSIKPQFLMQVDQFGILHAPFARARAYFFEFGFLDVPVLVHDAE-GALHRIPIDILVADSP 322          
BLAST of NO08G01120 vs. NCBI_GenBank
Match: ETI42686.1 (hypothetical protein F443_12229 [Phytophthora parasitica P1569])

HSP 1 Score: 160.2 bits (404), Expect = 1.000e-35
Identity = 102/299 (34.11%), Postives = 148/299 (49.50%), Query Frame = 0
Query:   42 PYQSHFRVIALVVYKDGEGGV-SHVCGTNAEPCTIGGSICAERAALVSLRHASQPVKLLALYVVTDEARNALFPGILCKEF-LSSMADDDFTIIVANAETTDVHFKKLGELYPFASAYRHTDRNELVATGQALAR--------------------------KIQMPSTESHAAILYEEVFKVTARDDRDNVHPIRYAAGVLFADGTRVVAWQKKGIEYGTTIDAMVQLAHALESNKSQGLASPILLLQCDQFGILHAPSGHARGFLMEYGYEQVPLLVHDIRTGELLRITVGATAPGRP 313
            P  S FRV+AL  Y+D +G +   V G NAE   IGG+ CAE AA+  L+    PV+ +    +  ++   L PG LC+EF LSS   ++ T  V+ A         L ELYPF S Y    R++++   +                              ++Q+     +   +Y +    T +D RD++ P+RYAAG  F+DG   V WQ K +EYG+++DA+ +L   +E+   Q    P  L+Q DQFGILHAP   AR +  E+G+  VP+LVHD   G L RI +       P
Sbjct:   72 PLLSGFRVLALFSYEDLDGQIDKFVIGANAECANIGGATCAEHAAMAQLQ--LLPVRRVRKIYIVSDSPQCLTPGTLCREFLLSSPLVEESTPFVSRAAKCRPCVTTLAELYPFPSLYDRVPRSQVLPFARKFCSRFATDLHEEGENADLQQENENVTPFVRLQLSRMTPNEKEVYLKALAATEKDARDDLFPLRYAAGTKFSDGEVRVTWQHKTLEYGSSLDAVSKLIPFVEA--KQNSIKPQFLMQVDQFGILHAPFARARAYFFEFGFLDVPVLVHDAE-GALHRIPIDILVADSP 365          
BLAST of NO08G01120 vs. NCBI_GenBank
Match: XP_009040537.1 (hypothetical protein AURANDRAFT_66947 [Aureococcus anophagefferens] >EGB04801.1 hypothetical protein AURANDRAFT_66947 [Aureococcus anophagefferens])

HSP 1 Score: 156.4 bits (394), Expect = 1.500e-34
Identity = 106/290 (36.55%), Postives = 149/290 (51.38%), Query Frame = 0
Query:   29 LRVINTYRTSLLPPYQSHFRVIALVVYKDGEGGVSHVCGTNAEPCTIGGSICAERAALVSLR----HASQPVKLLALYVVTDEARNALFPGILCKEFL-SSMADDDFTIIVANAETTDVHFK-KLGELYPFASAYRHTDRNELVATGQALARKIQMPSTESHAAILYEEVFKVTARDDRDNVHPIRYAAGVLFADGTRVVAWQKKGIEYGTTIDAMVQLAHALESNKSQGLASPILLLQCDQFGILHAPSGHARGFLMEYGYEQVPLLVHDIRTGELLRITVGATAPGRP 313
            L + N  R SL PP QS FRV+A+V    G     HV GTN E  T+  S+CAER A  +L+     +  P ++  +Y+V D +R  + PG+LC+EF+ SS   +  T +V  +    V  +  L EL P AS Y   +  E      AL+R +++P T   A   Y+        D RD++HP+RY A V+F DG+   A Q K +EYG T+D + QLA A+        A+P  L   DQ G+ HAP    R FL E+G+  V ++ HD R G +        AP  P
Sbjct:   36 LALANRIRASLPPPSQSSFRVVAVVTLVGG----GHVVGTNIEAHTLRNSVCAERTAFGALQLVAARSRAPTEVACVYIVCDASR-PITPGLLCREFMYSSPFCEPATRVVTASPGLRVRIETSLAELLPRASPYARLNARE--QKEWALSRTLEVP-TGGPARRAYDAALGAAKGDGRDDLHPVRYGAAVVFCDGSVATARQFKALEYGCTLDPVGQLATAVADRD----AAPAALALVDQLGVAHAPFAAGRAFLCEHGHGDVEVVFHDDR-GAIGTCPASDLAPAPP 312          
BLAST of NO08G01120 vs. NCBI_GenBank
Match: XP_005785529.1 (hypothetical protein EMIHUDRAFT_98807 [Emiliania huxleyi CCMP1516] >EOD33100.1 hypothetical protein EMIHUDRAFT_98807 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 146.7 bits (369), Expect = 1.200e-31
Identity = 98/263 (37.26%), Postives = 134/263 (50.95%), Query Frame = 0
Query:   42 PYQSHFRVIALVVYKDGEGGVSHVCGTNAEPCTIGGSICAERAALVSLRHASQPV--KLLALYVVTDEARNALFPGILCKEFLSS---MADDDFTIIVANAETTDVHFKKLGELYPFASAYRHTDRNELVATGQALARKIQMPSTESHAAILYEEVFKVTARDDRDNVHPIRYAAG------VLFADGTRVVAWQKKGIEYGTTIDAMVQLAHALESNKSQGLASPILLLQCDQFGILHAPSGHARGFLMEYGYEQVPLLVHD 294
            P QS FRV+A+VVY+ G+G VSHV G N E   +  SICAERAA V L    Q    ++ A+Y+ +D A   + PG LC+EF+ S    + D   ++       D+   +L  LYP AS Y      E  A G+ L                +E       RD R  +H I Y +G      V+F DG+   AWQ K +EY  ++DA+  LA AL + +  G+  P +L   DQ G+ HAP   AR  L+E+GY  V +LVHD
Sbjct:   46 PSQSKFRVVAVVVYERGDGTVSHVIGHNDEAACLKNSICAERAAFVQLCMLPQSACSRVTAVYIASD-AAEPITPGALCREFMMSSPLTSTDTRIVMEGGGRRLDL---RLAGLYPHASPYIRLTAEEQAAAGRRL------------GPAAWEGAVAAAQRDARP-LHAIGYGSGPHDSACVVFEDGSDARAWQWKALEYSCSLDAVCLLAPALAARRDGGV-EPRVLCLADQHGVCHAPHATARAILVEHGYGDVRVLVHD 290          
BLAST of NO08G01120 vs. NCBI_GenBank
Match: KOO31715.1 (hypothetical protein Ctob_012144 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 141.4 bits (355), Expect = 5.000e-30
Identity = 85/232 (36.64%), Postives = 127/232 (54.74%), Query Frame = 0
Query:   62 VSHVCGTNAEPCTIGGSICAERAALVSLRHASQPVKLLALYVVTDEARNALFPGILCKEF-LSSMADDDFTIIVANAETTDVHFKK--LGELYPFASAYRHTDRNELVATGQALARKI--QMPSTESHAAILYEEVFKVTARDDRDNVHPIRYAAGVLFADGTRVVAWQKKGIEYGTTIDAMVQLAHALESNKSQGLASPILLLQCDQFGILHAPSGHARGFLMEYGYEQVP 289
            V HV G N E C +  S+CAERAA + L     P++++ +++ TD A +A+ PG LC+E+ LSS      T +VA  E       +  L  L PFAS Y    R++ +ATG  L   +  Q  +       ++         D RD +HPIR+ A V F+DG    A  KK +EYG ++DA+ QLA A+E++++   A P+++   DQFG+LH P   AR +L E+G+   P
Sbjct:    2 VKHVVGHNDEACNLNNSVCAERAAFLQLAGIYAPLEVIDVFITTD-AAHAITPGSLCREYMLSSRWTFPTTRVVAEGEAGPASRIEVTLAALVPFASIYTRLKRDDQMATGARLEPTLAEQRSAMGGLDGAVWRAAVAACGGDARDELHPIRFGAAVAFSDGYIASASHKKALEYGCSLDAIGQLAPAIEAHRA--TAPPVVICFADQFGVLHGPFAPARAYLSEFGHTCPP 230          
BLAST of NO08G01120 vs. NCBI_GenBank
Match: OLP90065.1 (Ferredoxin-dependent glutamate synthase [Symbiodinium microadriaticum])

HSP 1 Score: 135.6 bits (340), Expect = 2.800e-28
Identity = 83/275 (30.18%), Postives = 128/275 (46.55%), Query Frame = 0
Query:   21 LGEETTRILRVINTYRTSLLPPYQSHFRVIALVVYKDGEGGVSHVCGTNAEP--CTIGGSICAERAALVSL-RHASQPVKLLALYVVTDEARNALFPGILCKEFLSSMADDDFTIIVANAETTDVHFKKLGELYPFASAYRHTDRNELVATGQALARKIQMPSTESHAAILYEEVFKVTARDDRDNVHPIRYAAGVLFADGTRVVAWQKKGIEYGTTIDAMVQLAHALESNKSQGLASPILLLQCDQFGILHAPSGHARGFLMEYGYEQVPLLVH 293
            +G      ++  ++ R     P QS FRV A++ +   +G        NAEP    I G+ICAER AL    +   Q    +   V   +  + +FPG LC+EFL++  D     +VA         + L EL P  S YR+ D     A   A+ ++ + P  +  A +         A+  +  ++P+ +AA   F DG    A + KGIEYG T+DA+  L   L   + +G      +LQ D +G+ HAP   AR  L+E+G+ +V L  H
Sbjct: 2246 IGVSVAEDVQAAHSLRERYEAPRQSKFRVSAILRFVRTDGSCDIFEAVNAEPHDANIRGAICAERVALCQFQKEELQKGSRVVRVVCATDCEDPIFPGPLCREFLTATCDPSIE-VVATGSKGSWEIQPLKELLPLPSLYRNLDNEAAKAKAAAMGKEAKEPEDQRFAKLYQAAAALALAQGKQTTIYPLAFAAAASFEDGRICTAAELKGIEYGCTVDAVSLLLPELVRARKEGRPGASAILQVDNYGLAHAPFAAARSLLIEHGFGEVLLTAH 2519          
BLAST of NO08G01120 vs. NCBI_GenBank
Match: CBN78109.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 119.4 bits (298), Expect = 2.000e-23
Identity = 96/341 (28.15%), Postives = 137/341 (40.18%), Query Frame = 0
Query:   67 GTNAEPCTIGGSICAERAALVSLRHASQPVKLLALYVVTDEARNALFPGILCKEFLSS---------MADDDFTII------------------------------VANAETTDV--------------------------------------------------------------HFKKLGELYPFASAYRHTDRNELVATG---QALARKIQMPS------TESHAAILYEEVFKVTARDDRDNVHPIRYAAGVLFADGTRVVAWQKKGIEYGTTIDAMVQLAHALESNKSQGLASPILLLQCDQFGILHAPSGHARGFLMEYGYEQVPLLVHDIRTG 298
            GTNAE  TIG SICAERAA+  LR  S   ++  + VVTD  ++ L PG+LC+EFLS+         M+     I+                              VA     D                                                                   +G+LYP+ + Y  T+R E +  G   Q  A ++  P+       ES     Y+  ++ TA DD+D++HPIRYAA  LF+DG   +  Q K  EYG ++D +  LA A+      G+ +  +LL  DQFG LHAP   AR FL E+G+ +  + +H+   G
Sbjct:    6 GTNAEASTIGSSICAERAAMCKLREESNCKRVTKVVVVTDH-QHPLAPGVLCREFLSAHLCPSTPVIMSGSGEAIVPGGLLYEEPNLKPSPDSAKNGGGATGSGALVAGEAAVDTCGCEAAPPAGDGRHAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVSTVGQLYPWKNMYGVTERGEQLKLGFLAQQKAEELSDPNLAERVGLESGVVEAYDAAWRATAGDDKDDIHPIRYAAVALFSDGEAEITHQLKAFEYGASLDPVTLLAPAMMRRAKDGIRTSWVLL-VDQFGNLHAPFAQARTFLSEHGFGETKVAIHEAGGG 344          
BLAST of NO08G01120 vs. NCBI_GenBank
Match: GAX22814.1 (hypothetical protein FisN_24Lh096 [Fistulifera solaris])

HSP 1 Score: 112.8 bits (281), Expect = 1.900e-21
Identity = 98/314 (31.21%), Postives = 162/314 (51.59%), Query Frame = 0
Query:   24 ETTRILRVINTYRTSLLPPYQSHFRVIALVVYKDGEGGVSHVCGTNAEPC-TIGGSICAERAALVS--LRHASQPVK--LLALYVVTDEARNALFPGILCKEFLS--SMADDDFTIIVANAETTDVHFKK-LGELYPFASAYRHTDRNELVATGQALARKIQMP-STESHAAI-------LYEEVFKVTARDDRDNVHPIRYAAGVLFA--DGTR--VVAWQKKGIEYGTTIDAMVQLAHALESNKSQGLASPILLLQCDQFGILHAPSGHARGFLMEYGYEQVPLLVH---DIRTGELLRITVGATAPGRPLI 315
            + + +LR  ++ R SL  P  S FRV+A++V +  E     + GTN E   ++  ++CAERAA     L++  Q  +  +  +Y+V+D A   + PG LC+EFLS  +++     I++ +A+T+   +   L EL+P  S Y   +  + +  G AL+  +Q P S +S  ++       L+   ++    D RD V P+ Y A  L    DG    V A   K +EYG++ DA+ QL   L S + + + + IL+   DQFG+LH P+  AR    EYG   VP++++   +    EL  + + + AP  P I
Sbjct:   38 DDSTLLRKAHSLRLSLSKPPLSQFRVVAILVTERKE----LIFGTNVESYGSLTNTLCAERAACSQYILQYPDQETRPFISTIYIVSD-ADVPISPGCLCREFLSGQNLSASQTRIVMQSADTSSKTWVSCLQELFPRPSLYNRLNIQQQLELGTALS--LQQPFSGQSVGSLSQQDVLNLWNTAWEAAKSDVRDKVFPMHYGAAALIRVDDGIHRLVSACALKAVEYGSSQDALCQL-WTLVSKQLEQITAVILV---DQFGLLHTPAAVARSIWAEYGGGSVPIILYKYDNTPKAELEAVPMESLAPYVPKI 340          
BLAST of NO08G01120 vs. NCBI_GenBank
Match: GAX12520.1 (hypothetical protein FisN_24Hh096 [Fistulifera solaris])

HSP 1 Score: 110.5 bits (275), Expect = 9.500e-21
Identity = 99/320 (30.94%), Postives = 163/320 (50.94%), Query Frame = 0
Query:   17 KNGSLGEETTRILRVINTYRTSLLPPYQSHFRVIALVVYKDGEGGVSHVCGTNAEPC-TIGGSICAERAALVS--LRHASQPVK--LLALYVVTDEARNALFPGILCKEFLS--SMADDDFTIIVANAETTDVHFKK-LGELYPFASAYRHTDRNELVATGQALARKIQMPSTESHAAI-------LYEEVFKVTARDDRDNVHPIRYAAGVLFA--DGTR--VVAWQKKGIEYGTTIDAMVQLAHALESNKSQGLASPILLLQCDQFGILHAPSGHARGFLMEYGYEQVPLLVH---DIRTGELLRITVGATAPGRPLI 315
            KN S  + T  +LR  ++ R SL  P  S FRV+A++V +  E     + GTN E   ++  ++CAERAA     L++  Q  +  +  +Y+V+D A   + PG LC+EFLS  +++     I++ +A+++   +   L EL+P  S Y   +  + +  G  L+ + Q  S +S  ++       L+   ++    D RD V P+ Y A  L    DG    V A   K +EYG++ DA+ QL   L S + + + + IL+   DQFG+LH P+  AR    EYG   VP++++   +    EL  + + + AP  P I
Sbjct:   34 KNDSNDDYT--LLRKAHSLRLSLSKPPLSQFRVVAILVTERKE----LIFGTNVESYGSLTNTLCAERAACSQYILQYPDQETRPFITTIYIVSD-ADVPISPGCLCREFLSGQNLSASQTRIVMQSADSSSKPWVSCLQELFPRPSLYNRLNIQQQLELGTVLSSQ-QPFSGQSVGSLSQQDILNLWNTAWQAAKSDVRDKVFPMHYGAAALIKVDDGIHRLVSACALKAVEYGSSQDALCQL-WTLVSKQLEQITAVILV---DQFGLLHTPAAVARSIWAEYGGGSVPIILYKYDNTPKAELEAVPMDSLAPYVPKI 341          
BLAST of NO08G01120 vs. NCBI_GenBank
Match: EJK65827.1 (hypothetical protein THAOC_13276 [Thalassiosira oceanica])

HSP 1 Score: 109.4 bits (272), Expect = 2.100e-20
Identity = 113/458 (24.67%), Postives = 157/458 (34.28%), Query Frame = 0
Query:   35 YRTSL-LPPYQSHFRVIALVVYKDGEGG-----VSHVCGTNAEPCTIGGSICAERAALVSLRHASQPVKLLALYVVTDEARNALFPGILCKEFLSS---------------------------------MADDDFTIIVANAETTDVHFKK-----------------------------LGELYPFASAY-----------------------------------------------------------------------------------------RHTDRNELVATGQALARKIQ-----------------MPSTESHAAI-----------------LYEEVFKVTARDD-RDNVHPIRYAAGVLFADGTRVVAWQKKGIEYGTTIDAMVQLAHALESN-----KSQGLASPILLLQCDQFGILHAPSGHARGFLMEYGYEQVPLLVHDIR 296
            YR SL +PP QS FRV+ +V +     G       HV GTN EP  I GSICAERAAL+ +R       +  L +VTDE  +A+ PG+LC+EF++S                                   D D    +++ ET    F                               L EL+PF S Y                                                                                         RH+   + + T   L + ++                 +P T  H                    L     ++TA ++   + HP+RY A VLF+DGT  +A QK  +EYG T+DA+ QLA A++       + +    P+LL+QCDQFGI HAP    R FL E GY    +L+H  R
Sbjct:  954 YRLSLKVPPNQSFFRVVCVVFFSRRINGNLREERFHVVGTNDEPSAISGSICAERAALMQIRFIPDIETVTKLVIVTDEV-DAISPGLLCREFMASHGKIPWDVPIVLGRRWLPSSVCRKCGLTLSGKACGDSDGCFDMSSDETLKEKFDNVFATCQRGHDESKNKAFPTPHDFVGSVTTLKELFPFPSIYVRMTAREAHRFGEIMMDQTSSKNPLPRGSSTKDDDDVTTGSFRQERFDLTMLTSVLEEGGPPTSEVIIDDSSKGVDTNGSLVTAGGKAQRHSSITKSLTTTMGLLKAVRENRQELDLPGGVSGMSDLPGTLEHLTARTLRISTRLKNSQRREKLMRYATEITALENPLRHAHPLRYGAAVLFSDGTVSIASQKVALEYGCTLDAVGQLASAIDKKAIRVVEEEDPCRPVLLVQCDQFGIAHAPFAQGRAFLSERGYGDCKVLIHQKR 1410          
The following BLAST results are available for this feature:
BLAST of NO08G01120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
KUF99019.16.100e-3634.45hypothetical protein AM588_10008357 [Phytophthora ... [more]
ETI42686.11.000e-3534.11hypothetical protein F443_12229 [Phytophthora para... [more]
XP_009040537.11.500e-3436.55hypothetical protein AURANDRAFT_66947 [Aureococcus... [more]
XP_005785529.11.200e-3137.26hypothetical protein EMIHUDRAFT_98807 [Emiliania h... [more]
KOO31715.15.000e-3036.64hypothetical protein Ctob_012144 [Chrysochromulina... [more]
OLP90065.12.800e-2830.18Ferredoxin-dependent glutamate synthase [Symbiodin... [more]
CBN78109.12.000e-2328.15conserved unknown protein [Ectocarpus siliculosus][more]
GAX22814.11.900e-2131.21hypothetical protein FisN_24Lh096 [Fistulifera sol... [more]
GAX12520.19.500e-2130.94hypothetical protein FisN_24Hh096 [Fistulifera sol... [more]
EJK65827.12.100e-2024.67hypothetical protein THAOC_13276 [Thalassiosira oc... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008942NSK008942Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G01120.1NO08G01120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582134gene_3441Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g19gene3939Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G01120.1NO08G01120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G01120 ID=NO08G01120|Name=NO08G01120|organism=Nannochloropsis oceanica|type=gene|length=1053bp
ATGACAACGCTCCCGGGCCTGGATTTCACCGAGTACGATGACTTTGGCAA
AAATGGAAGCTTGGGAGAGGAGACCACGCGTATTTTGCGCGTCATCAACA
CCTATCGTACTTCTCTTCTTCCACCGTACCAATCGCATTTCCGCGTAATT
GCCCTGGTTGTGTACAAGGACGGGGAAGGCGGAGTCAGCCACGTCTGCGG
CACCAATGCAGAGCCGTGCACCATCGGTGGCAGCATCTGCGCGGAGCGCG
CGGCCTTGGTATCGCTCCGACATGCGTCACAACCTGTAAAATTGCTTGCA
CTTTATGTAGTTACAGACGAAGCCCGCAACGCGCTTTTCCCGGGCATTCT
GTGCAAAGAGTTCTTGAGCAGCATGGCTGACGATGACTTCACGATAATCG
TGGCCAATGCCGAGACGACTGACGTCCACTTTAAGAAGCTGGGAGAGCTA
TATCCCTTCGCGTCCGCGTATAGACACACAGATCGGAACGAGCTGGTGGC
GACAGGACAAGCACTAGCACGGAAAATACAAATGCCATCAACCGAAAGTC
ATGCGGCAATATTGTACGAGGAGGTGTTCAAGGTGACCGCAAGgtgcgtt
tgacgtacatggcagataaatacattacaaccatccttacattctccttc
catcgatccatctttcgaacgcacaatacacagGGACGACAGAGACAACG
TCCATCCCATCCGATACGCGGCTGGTGTGCTCTTTGCTGATGGTACCCGT
GTGGTGGCCTGGCAGAAAAAGGGAATTGAATACGGCACGACTATCGATGC
GATGGTGCAGCTGGCGCATGCCTTGGAGAGCAACAAATCGCAGGGACTTG
CATCCCCTATCTTGCTTTTACAATGTGACCAATTTGGCATCTTGCACGCC
CCGTCCGGCCATGCCCGAGGCTTTTTGATGGAATATGGATACGAGCAAGT
GCCATTGCTTGTCCACGACATCCGCACAGGAGAGCTGCTGAGGATTACCG
TGGGCGCGACGGCTCCAGGGAGGCCATTGATTAGCTTTGGGGAGGAAAAT
TAG
back to top

protein sequence of NO08G01120.1

>NO08G01120.1-protein ID=NO08G01120.1-protein|Name=NO08G01120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=321bp
MTTLPGLDFTEYDDFGKNGSLGEETTRILRVINTYRTSLLPPYQSHFRVI
ALVVYKDGEGGVSHVCGTNAEPCTIGGSICAERAALVSLRHASQPVKLLA
LYVVTDEARNALFPGILCKEFLSSMADDDFTIIVANAETTDVHFKKLGEL
YPFASAYRHTDRNELVATGQALARKIQMPSTESHAAILYEEVFKVTARDD
RDNVHPIRYAAGVLFADGTRVVAWQKKGIEYGTTIDAMVQLAHALESNKS
QGLASPILLLQCDQFGILHAPSGHARGFLMEYGYEQVPLLVHDIRTGELL
RITVGATAPGRPLISFGEEN*
back to top
Synonyms
Publications