NO08G01120.1, NO08G01120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01120.1
Unique NameNO08G01120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length963
Alignment locationchr8:354125..355177 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:354125..355177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G01120.1 vs.
Match: EWM26712.1 (phosphatidylinositol class b [Nannochloropsis gaditana])

HSP 1 Score: 412.9 bits (1060), Expect = 9.000e-112
Identity = 199/317 (62.78%), Postives = 244/317 (76.97%), Query Frame = 0 
Query:    1 MTTLPGLDFTEYDDFGKNGSLGEETTRILRVINTYRTSLLPPYQSHFRVIALVVYKDGEGGVSHVCGTNAEPCTIGGSICAERAALVSLRHASQPVKLLALYVVTDEARNALFPGILCKEFLSSMADDDFTIIVANAETTDVHFKKLGELYPFASAYRHTDRNELVATGQA-LARKIQMPSTESHAAILYEEVFKVTARDDRDNVHPIRYAAGVLFADGTRVVAWQKKGIEYGTTIDAMVQLAHALESNKSQGLASPILLLQCDQFGILHAPSGHARGFLMEYGYEQVPLLVHDIRTGELLRITVGATAPGRPLISF 317
            M TLP       ++ G + ++  E   +L++IN YRT L+PPYQS FRV+A++VYK+G+G ++HVCGTN+EPC I GSICAERAAL +LRH   PV LL LYVV+D+   ALFPGILCKEFLSSMA DD  I+VANA TTD+    LG LYP+AS YRHTDRN+LV TG+A +A+ +++P  +     LY EV   TARDD+D +HPIRYAAGV FADG +VVAWQKKG+EYGTTIDA+VQLAHA+E  + QGL  PILLLQ DQFGILHAPSGHARGFLMEY Y  +PLLVH+  +G+LL +TV  TAP RP+I+F
Sbjct:   38 MATLPDFKIHLNEEEG-DSAIAAEACHMLKLINNYRTKLIPPYQSQFRVVAVIVYKNGQGDINHVCGTNSEPCMISGSICAERAALAALRHVPPPVTLLRLYVVSDQTHEALFPGILCKEFLSSMAGDDLRILVANAGTTDIRCLTLGALYPYASLYRHTDRNKLVVTGEAFIAKGMEIPQNDGPEEKLYREVLDSTARDDKDELHPIRYAAGVRFADGIQVVAWQKKGLEYGTTIDAVVQLAHAMEWRRGQGLPGPILLLQSDQFGILHAPSGHARGFLMEYDYGDLPLLVHETSSGKLLTLTVSETAPERPIINF 353
The following BLAST results are available for this feature:
BLAST of NO08G01120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26712.19.000e-11262.78phosphatidylinositol class b [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01120NO08G01120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01120.1NO08G01120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01120.1.cds1NO08G01120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G01120.1.cds2NO08G01120.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01120.1 ID=NO08G01120.1|Name=NO08G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=963bp
ATGACAACGCTCCCGGGCCTGGATTTCACCGAGTACGATGACTTTGGCAA
AAATGGAAGCTTGGGAGAGGAGACCACGCGTATTTTGCGCGTCATCAACA
CCTATCGTACTTCTCTTCTTCCACCGTACCAATCGCATTTCCGCGTAATT
GCCCTGGTTGTGTACAAGGACGGGGAAGGCGGAGTCAGCCACGTCTGCGG
CACCAATGCAGAGCCGTGCACCATCGGTGGCAGCATCTGCGCGGAGCGCG
CGGCCTTGGTATCGCTCCGACATGCGTCACAACCTGTAAAATTGCTTGCA
CTTTATGTAGTTACAGACGAAGCCCGCAACGCGCTTTTCCCGGGCATTCT
GTGCAAAGAGTTCTTGAGCAGCATGGCTGACGATGACTTCACGATAATCG
TGGCCAATGCCGAGACGACTGACGTCCACTTTAAGAAGCTGGGAGAGCTA
TATCCCTTCGCGTCCGCGTATAGACACACAGATCGGAACGAGCTGGTGGC
GACAGGACAAGCACTAGCACGGAAAATACAAATGCCATCAACCGAAAGTC
ATGCGGCAATATTGTACGAGGAGGTGTTCAAGGTGACCGCAAGGGACGAC
AGAGACAACGTCCATCCCATCCGATACGCGGCTGGTGTGCTCTTTGCTGA
TGGTACCCGTGTGGTGGCCTGGCAGAAAAAGGGAATTGAATACGGCACGA
CTATCGATGCGATGGTGCAGCTGGCGCATGCCTTGGAGAGCAACAAATCG
CAGGGACTTGCATCCCCTATCTTGCTTTTACAATGTGACCAATTTGGCAT
CTTGCACGCCCCGTCCGGCCATGCCCGAGGCTTTTTGATGGAATATGGAT
ACGAGCAAGTGCCATTGCTTGTCCACGACATCCGCACAGGAGAGCTGCTG
AGGATTACCGTGGGCGCGACGGCTCCAGGGAGGCCATTGATTAGCTTTGG
GGAGGAAAATTAG
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protein sequence of NO08G01120.1

>NO08G01120.1-protein ID=NO08G01120.1-protein|Name=NO08G01120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=321bp
MTTLPGLDFTEYDDFGKNGSLGEETTRILRVINTYRTSLLPPYQSHFRVI
ALVVYKDGEGGVSHVCGTNAEPCTIGGSICAERAALVSLRHASQPVKLLA
LYVVTDEARNALFPGILCKEFLSSMADDDFTIIVANAETTDVHFKKLGEL
YPFASAYRHTDRNELVATGQALARKIQMPSTESHAAILYEEVFKVTARDD
RDNVHPIRYAAGVLFADGTRVVAWQKKGIEYGTTIDAMVQLAHALESNKS
QGLASPILLLQCDQFGILHAPSGHARGFLMEYGYEQVPLLVHDIRTGELL
RITVGATAPGRPLISFGEEN*
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mRNA from alignment at chr8:354125..355177+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01120.1 ID=NO08G01120.1|Name=NO08G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1053bp|location=Sequence derived from alignment at chr8:354125..355177+ (Nannochloropsis oceanica)
ATGACAACGCTCCCGGGCCTGGATTTCACCGAGTACGATGACTTTGGCAA
AAATGGAAGCTTGGGAGAGGAGACCACGCGTATTTTGCGCGTCATCAACA
CCTATCGTACTTCTCTTCTTCCACCGTACCAATCGCATTTCCGCGTAATT
GCCCTGGTTGTGTACAAGGACGGGGAAGGCGGAGTCAGCCACGTCTGCGG
CACCAATGCAGAGCCGTGCACCATCGGTGGCAGCATCTGCGCGGAGCGCG
CGGCCTTGGTATCGCTCCGACATGCGTCACAACCTGTAAAATTGCTTGCA
CTTTATGTAGTTACAGACGAAGCCCGCAACGCGCTTTTCCCGGGCATTCT
GTGCAAAGAGTTCTTGAGCAGCATGGCTGACGATGACTTCACGATAATCG
TGGCCAATGCCGAGACGACTGACGTCCACTTTAAGAAGCTGGGAGAGCTA
TATCCCTTCGCGTCCGCGTATAGACACACAGATCGGAACGAGCTGGTGGC
GACAGGACAAGCACTAGCACGGAAAATACAAATGCCATCAACCGAAAGTC
ATGCGGCAATATTGTACGAGGAGGTGTTCAAGGTGACCGCAAGGTGCGTT
TGACGTACATGGCAGATAAATACATTACAACCATCCTTACATTCTCCTTC
CATCGATCCATCTTTCGAACGCACAATACACAGGGACGACAGAGACAACG
TCCATCCCATCCGATACGCGGCTGGTGTGCTCTTTGCTGATGGTACCCGT
GTGGTGGCCTGGCAGAAAAAGGGAATTGAATACGGCACGACTATCGATGC
GATGGTGCAGCTGGCGCATGCCTTGGAGAGCAACAAATCGCAGGGACTTG
CATCCCCTATCTTGCTTTTACAATGTGACCAATTTGGCATCTTGCACGCC
CCGTCCGGCCATGCCCGAGGCTTTTTGATGGAATATGGATACGAGCAAGT
GCCATTGCTTGTCCACGACATCCGCACAGGAGAGCTGCTGAGGATTACCG
TGGGCGCGACGGCTCCAGGGAGGCCATTGATTAGCTTTGGGGAGGAAAAT
TAG
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Coding sequence (CDS) from alignment at chr8:354125..355177+

>NO08G01120.1 ID=NO08G01120.1|Name=NO08G01120.1|organism=Nannochloropsis oceanica|type=CDS|length=963bp|location=Sequence derived from alignment at chr8:354125..355177+ (Nannochloropsis oceanica)
ATGACAACGCTCCCGGGCCTGGATTTCACCGAGTACGATGACTTTGGCAA
AAATGGAAGCTTGGGAGAGGAGACCACGCGTATTTTGCGCGTCATCAACA
CCTATCGTACTTCTCTTCTTCCACCGTACCAATCGCATTTCCGCGTAATT
GCCCTGGTTGTGTACAAGGACGGGGAAGGCGGAGTCAGCCACGTCTGCGG
CACCAATGCAGAGCCGTGCACCATCGGTGGCAGCATCTGCGCGGAGCGCG
CGGCCTTGGTATCGCTCCGACATGCGTCACAACCTGTAAAATTGCTTGCA
CTTTATGTAGTTACAGACGAAGCCCGCAACGCGCTTTTCCCGGGCATTCT
GTGCAAAGAGTTCTTGAGCAGCATGGCTGACGATGACTTCACGATAATCG
TGGCCAATGCCGAGACGACTGACGTCCACTTTAAGAAGCTGGGAGAGCTA
TATCCCTTCGCGTCCGCGTATAGACACACAGATCGGAACGAGCTGGTGGC
GACAGGACAAGCACTAGCACGGAAAATACAAATGCCATCAACCGAAAGTC
ATGCGGCAATATTGTACGAGGAGGTGTTCAAGGTGACCGCAAGGGACGAC
AGAGACAACGTCCATCCCATCCGATACGCGGCTGGTGTGCTCTTTGCTGA
TGGTACCCGTGTGGTGGCCTGGCAGAAAAAGGGAATTGAATACGGCACGA
CTATCGATGCGATGGTGCAGCTGGCGCATGCCTTGGAGAGCAACAAATCG
CAGGGACTTGCATCCCCTATCTTGCTTTTACAATGTGACCAATTTGGCAT
CTTGCACGCCCCGTCCGGCCATGCCCGAGGCTTTTTGATGGAATATGGAT
ACGAGCAAGTGCCATTGCTTGTCCACGACATCCGCACAGGAGAGCTGCTG
AGGATTACCGTGGGCGCGACGGCTCCAGGGAGGCCATTGATTAGCTTTGG
GGAGGAAAATTAG
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Synonyms
Publications