NO08G01070, NO08G01070 (gene) Nannochloropsis oceanica

Overview
NameNO08G01070
Unique NameNO08G01070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1944
Alignment locationchr8:338050..339993 +

Link to JBrowse

Properties
Property NameValue
DescriptionMagnesium and cobalt transport protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:338050..339993 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO:0046873metal ion transmembrane transporter activity
GO:0005509calcium ion binding
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO:0030001metal ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO08G01070 vs. NCBI_GenBank
Match: EWM26589.1 (magnesium and cobalt transport protein [Nannochloropsis gaditana])

HSP 1 Score: 218.8 bits (556), Expect = 2.000e-53
Identity = 119/189 (62.96%), Postives = 130/189 (68.78%), Query Frame = 0 
Query:   45 WSVDQLDWLDASVWSTIAQHGQQINIYSPDIQEVIDVTDGRLRNLYDAFDRDFDGRLSKPELLQGLAQQGFHNLEGTREFELLWETCEKITKSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAVGGEESDERKDENRITFAAFKRIVQRLKMELLFLPAMCLRG---GGGGPAQEKGQRGRF 231
            +SVDQLD LDASVWSTIAQHG+ I++YSPD+QEVIDVTDGRLRNLYDAFDRDFDGRLSKPELLQGLAQQGF NLEGTREFELLWETCEKIT +                                   +  GG     RKDENRITFAAFKRIVQRLKMELLFLP M +R          +E+G+ GRF
Sbjct:   19 FSVDQLDGLDASVWSTIAQHGRPIDVYSPDVQEVIDVTDGRLRNLYDAFDRDFDGRLSKPELLQGLAQQGFTNLEGTREFELLWETCEKITTNREGPGGAESEEEGEGLGPELAGARRGVSSGQLSARKGRGG-----RKDENRITFAAFKRIVQRLKMELLFLPPMAMRQKQLATKDRIEERGEHGRF 202
The following BLAST results are available for this feature:
BLAST of NO08G01070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26589.12.000e-5362.96magnesium and cobalt transport protein [Nannochlor... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008945NSK008945Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G01070.1NO08G01070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100001g16gene3942Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G01070.1NO08G01070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G01070 ID=NO08G01070|Name=NO08G01070|organism=Nannochloropsis oceanica|type=gene|length=1944bp
ACTTAAAGCTTACAGCACCATATTAACGCCTTTTAATCATATTTTTCCTT
TCAGTTTCTATACGTCGACACATCGAGGGCGAGCGACCAACTTCAGCCCA
TGGCGGAGCCACAGGAGAAGTGCACCGTGACGTACGCGACTTTCCCTGCC
TCCAGAGGAGAAACCCCCACGTTACCGTGTGCCCCTGTGGCATGTGCTGC
CTCTCACCAAACCTCAGAAGGGTAGTTTAGACCACACACACCACACCTAA
TGCCCACATGACAGGCTTGAGTTGGCGGCGACTACTGCGGACTTGGGTCC
GATGTGGATGACGTCCCTTCTTTTTTCTGTATAGTATACCTTTCTTCTCC
TAGGTTGGGCACCACCCGCCCCGCCTTCCATCAAATGAGCCCCGCGATCC
TTCCGGTTCCACTGCCCGAAATTGAATCGAGGCACATGATCCATCCACCC
TGCGACATGCGGAGGTGGTCTAGCTGTCCTTGGCGCGCGAGGCGCCGGGT
GCAGAGACCGCGGCAAAAGAAACATAACCCCTGCCCATGCCTAATCGACA
ACCACAATACCAAAATACCAATACCACCACCATACCACCACAGGATCCGA
CCACCCAGGATCGGCCTTTGATGCACAGGCCTTGTCACTTCCGTTTGTGT
TCCTTGTCCCCCTGGATAGACGTCGAGAAGCCTCCATAGCTAAGGCCACA
CGGTAGACAAGCAGACAATACGAGCCGGCACCTGACACTAAGCTCTCAGA
TACGGAAAAGAGAAGCAGCAGCACCAGCAAAAGCAGCTGAAGTAGTAGTG
AACCAGAGGTGACATCCAACAGGAAACTTTAAAAGGGCTTTTGTCGTGGT
ATCAGTCTGTAGCAGCAGTCTGAAGCAGCACCAGCAGTATTACCCGCCAA
CTTCTTCACACTTCACACGCACAAAGACACATTTCTCTAATCACTATGTC
TTCCTCCTCCGCATCCACCCCCTCTCACCAACATATCCATGCGGCAACTG
CCTCTGCCCGGGCCGCCGCTGCCGCTACCGCAGCTGCAGCTGCTGCTCGG
AGCATCAGCCATGCTGCGCAGCCTTTCTGGTCAGTCGATCAATTGGATTG
GTTGGACGCCTCGGTGTGGTCCACGATTGCCCAGCACGGACAACAGATTA
ACATCTATTCGCCTGATATCCAGGAAGTGATCGATGTTACGGATGGACGG
TTGCGGAATTTGTATGATGCCTTTGACAGgtacgtgtaggaggtaggggg
gggactgagggagagaggaggaaggagagtaaggcatggagggagacagg
aaaggaagattgggagatgcgacggtttgcggtggcattcagtttacttc
tacccttcctgttgacaatcctgaaggtgttcacaattttgagcgagcag
taacctaccacatccccctcttcctctcccccctcccccccccgctttgc
tccctttttgcaacagAGATTTTGACGGGCGTTTGAGCAAGCCGGAATTG
CTCCAAGGACTGGCACAGCAGGGTTTTCATAACCTGGAAGGAACGCGGGA
GTTTGAACTGTTGTGGGAGACATGCGAGAAAATCACCAAGAGTGACGGTG
GAGGAGGAGGAGGGGAAGGAAGAGGCGAGGAGGAGGAAGCGGAGGGGGTG
GGAGGGCCGGAGCTGGCAGGGGGAGGACGAGGTCGAGGAAAAGGAGGGAG
GGCAGTGGGAGGAGAGGAGAGCGATGAAAGAAAGGATGAGAATCGGATTA
CGTTTGCGGCTTTTAAGCGCATTGTGCAGCGTTTGAAGATGGAGTTGTTG
TTCTTGCCAGCGATGTGCCTGCGGGGGGGGGGGGGGGGTCCGGCACAAGA
GAAGGGGCAGAGAGGGAGGTTCAGGTGGGAGGGATGTGGGATAGTAGAAG
CTGTACTCCCGTTCCGTATGGAGCGCCCTTGGCTGTCTCGGTAG
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protein sequence of NO08G01070.1

>NO08G01070.1-protein ID=NO08G01070.1-protein|Name=NO08G01070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MSSSSASTPSHQHIHAATASARAAAAATAAAAAARSISHAAQPFWSVDQL
DWLDASVWSTIAQHGQQINIYSPDIQEVIDVTDGRLRNLYDAFDRDFDGR
LSKPELLQGLAQQGFHNLEGTREFELLWETCEKITKSDGGGGGGEGRGEE
EEAEGVGGPELAGGGRGRGKGGRAVGGEESDERKDENRITFAAFKRIVQR
LKMELLFLPAMCLRGGGGGPAQEKGQRGRFRWEGCGIVEAVLPFRMERPW
LSR*
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Synonyms
Publications