NO08G01070.1, NO08G01070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01070.1
Unique NameNO08G01070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1707
Alignment locationchr8:338050..339993 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:338050..339993 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G01070.1 vs.
Match: EWM26589.1 (magnesium and cobalt transport protein [Nannochloropsis gaditana])

HSP 1 Score: 237.7 bits (605), Expect = 4.100e-59
Identity = 135/198 (68.18%), Postives = 152/198 (76.77%), Query Frame = 0 
Query:   36 SISHAAQPFWSVDQLDWLDASVWSTIAQHGQQINIYSPDIQEVIDVTDGRLRNLYDAFDRDFDGRLSKPELLQGLAQQGFHNLEGTREFELLWETCEKITKSDGGGGGGEGRGEEEEAEGVGGPELAGGGRGRGKGGRAVGGEESDERKDENRITFAAFKRIVQRLKMELLFLPAMCLRG---GGGGPAQEKGQRGRF 231
            ++ + +   +SVDQLD LDASVWSTIAQHG+ I++YSPD+QEVIDVTDGRLRNLYDAFDRDFDGRLSKPELLQGLAQQGF NLEGTREFELLWETCEKIT +  G GG E    EEE EG+ GPELAG  RG    G+    +    RKDENRITFAAFKRIVQRLKMELLFLP M +R          +E+G+ GRF
Sbjct:   10 ALRNTSTQVFSVDQLDGLDASVWSTIAQHGRPIDVYSPDVQEVIDVTDGRLRNLYDAFDRDFDGRLSKPELLQGLAQQGFTNLEGTREFELLWETCEKITTNREGPGGAE---SEEEGEGL-GPELAGARRG-VSSGQLSARKGRGGRKDENRITFAAFKRIVQRLKMELLFLPPMAMRQKQLATKDRIEERGEHGRF 202
The following BLAST results are available for this feature:
BLAST of NO08G01070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26589.14.100e-5968.18magnesium and cobalt transport protein [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01070NO08G01070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01070.1NO08G01070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01070.1.cds1NO08G01070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G01070.1.cds2NO08G01070.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01070.1 ID=NO08G01070.1|Name=NO08G01070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1707bp
ACTTAAAGCTTACAGCACCATATTAACGCCTTTTAATCATATTTTTCCTT
TCAGTTTCTATACGTCGACACATCGAGGGCGAGCGACCAACTTCAGCCCA
TGGCGGAGCCACAGGAGAAGTGCACCGTGACGTACGCGACTTTCCCTGCC
TCCAGAGGAGAAACCCCCACGTTACCGTGTGCCCCTGTGGCATGTGCTGC
CTCTCACCAAACCTCAGAAGGGTAGTTTAGACCACACACACCACACCTAA
TGCCCACATGACAGGCTTGAGTTGGCGGCGACTACTGCGGACTTGGGTCC
GATGTGGATGACGTCCCTTCTTTTTTCTGTATAGTATACCTTTCTTCTCC
TAGGTTGGGCACCACCCGCCCCGCCTTCCATCAAATGAGCCCCGCGATCC
TTCCGGTTCCACTGCCCGAAATTGAATCGAGGCACATGATCCATCCACCC
TGCGACATGCGGAGGTGGTCTAGCTGTCCTTGGCGCGCGAGGCGCCGGGT
GCAGAGACCGCGGCAAAAGAAACATAACCCCTGCCCATGCCTAATCGACA
ACCACAATACCAAAATACCAATACCACCACCATACCACCACAGGATCCGA
CCACCCAGGATCGGCCTTTGATGCACAGGCCTTGTCACTTCCGTTTGTGT
TCCTTGTCCCCCTGGATAGACGTCGAGAAGCCTCCATAGCTAAGGCCACA
CGGTAGACAAGCAGACAATACGAGCCGGCACCTGACACTAAGCTCTCAGA
TACGGAAAAGAGAAGCAGCAGCACCAGCAAAAGCAGCTGAAGTAGTAGTG
AACCAGAGGTGACATCCAACAGGAAACTTTAAAAGGGCTTTTGTCGTGGT
ATCAGTCTGTAGCAGCAGTCTGAAGCAGCACCAGCAGTATTACCCGCCAA
CTTCTTCACACTTCACACGCACAAAGACACATTTCTCTAATCACTATGTC
TTCCTCCTCCGCATCCACCCCCTCTCACCAACATATCCATGCGGCAACTG
CCTCTGCCCGGGCCGCCGCTGCCGCTACCGCAGCTGCAGCTGCTGCTCGG
AGCATCAGCCATGCTGCGCAGCCTTTCTGGTCAGTCGATCAATTGGATTG
GTTGGACGCCTCGGTGTGGTCCACGATTGCCCAGCACGGACAACAGATTA
ACATCTATTCGCCTGATATCCAGGAAGTGATCGATGTTACGGATGGACGG
TTGCGGAATTTGTATGATGCCTTTGACAGAGATTTTGACGGGCGTTTGAG
CAAGCCGGAATTGCTCCAAGGACTGGCACAGCAGGGTTTTCATAACCTGG
AAGGAACGCGGGAGTTTGAACTGTTGTGGGAGACATGCGAGAAAATCACC
AAGAGTGACGGTGGAGGAGGAGGAGGGGAAGGAAGAGGCGAGGAGGAGGA
AGCGGAGGGGGTGGGAGGGCCGGAGCTGGCAGGGGGAGGACGAGGTCGAG
GAAAAGGAGGGAGGGCAGTGGGAGGAGAGGAGAGCGATGAAAGAAAGGAT
GAGAATCGGATTACGTTTGCGGCTTTTAAGCGCATTGTGCAGCGTTTGAA
GATGGAGTTGTTGTTCTTGCCAGCGATGTGCCTGCGGGGGGGGGGGGGGG
GTCCGGCACAAGAGAAGGGGCAGAGAGGGAGGTTCAGGTGGGAGGGATGT
GGGATAGTAGAAGCTGTACTCCCGTTCCGTATGGAGCGCCCTTGGCTGTC
TCGGTAG
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protein sequence of NO08G01070.1

>NO08G01070.1-protein ID=NO08G01070.1-protein|Name=NO08G01070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MSSSSASTPSHQHIHAATASARAAAAATAAAAAARSISHAAQPFWSVDQL
DWLDASVWSTIAQHGQQINIYSPDIQEVIDVTDGRLRNLYDAFDRDFDGR
LSKPELLQGLAQQGFHNLEGTREFELLWETCEKITKSDGGGGGGEGRGEE
EEAEGVGGPELAGGGRGRGKGGRAVGGEESDERKDENRITFAAFKRIVQR
LKMELLFLPAMCLRGGGGGPAQEKGQRGRFRWEGCGIVEAVLPFRMERPW
LSR*
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mRNA from alignment at chr8:338050..339993+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01070.1 ID=NO08G01070.1|Name=NO08G01070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1944bp|location=Sequence derived from alignment at chr8:338050..339993+ (Nannochloropsis oceanica)
ACTTAAAGCTTACAGCACCATATTAACGCCTTTTAATCATATTTTTCCTT
TCAGTTTCTATACGTCGACACATCGAGGGCGAGCGACCAACTTCAGCCCA
TGGCGGAGCCACAGGAGAAGTGCACCGTGACGTACGCGACTTTCCCTGCC
TCCAGAGGAGAAACCCCCACGTTACCGTGTGCCCCTGTGGCATGTGCTGC
CTCTCACCAAACCTCAGAAGGGTAGTTTAGACCACACACACCACACCTAA
TGCCCACATGACAGGCTTGAGTTGGCGGCGACTACTGCGGACTTGGGTCC
GATGTGGATGACGTCCCTTCTTTTTTCTGTATAGTATACCTTTCTTCTCC
TAGGTTGGGCACCACCCGCCCCGCCTTCCATCAAATGAGCCCCGCGATCC
TTCCGGTTCCACTGCCCGAAATTGAATCGAGGCACATGATCCATCCACCC
TGCGACATGCGGAGGTGGTCTAGCTGTCCTTGGCGCGCGAGGCGCCGGGT
GCAGAGACCGCGGCAAAAGAAACATAACCCCTGCCCATGCCTAATCGACA
ACCACAATACCAAAATACCAATACCACCACCATACCACCACAGGATCCGA
CCACCCAGGATCGGCCTTTGATGCACAGGCCTTGTCACTTCCGTTTGTGT
TCCTTGTCCCCCTGGATAGACGTCGAGAAGCCTCCATAGCTAAGGCCACA
CGGTAGACAAGCAGACAATACGAGCCGGCACCTGACACTAAGCTCTCAGA
TACGGAAAAGAGAAGCAGCAGCACCAGCAAAAGCAGCTGAAGTAGTAGTG
AACCAGAGGTGACATCCAACAGGAAACTTTAAAAGGGCTTTTGTCGTGGT
ATCAGTCTGTAGCAGCAGTCTGAAGCAGCACCAGCAGTATTACCCGCCAA
CTTCTTCACACTTCACACGCACAAAGACACATTTCTCTAATCACTATGTC
TTCCTCCTCCGCATCCACCCCCTCTCACCAACATATCCATGCGGCAACTG
CCTCTGCCCGGGCCGCCGCTGCCGCTACCGCAGCTGCAGCTGCTGCTCGG
AGCATCAGCCATGCTGCGCAGCCTTTCTGGTCAGTCGATCAATTGGATTG
GTTGGACGCCTCGGTGTGGTCCACGATTGCCCAGCACGGACAACAGATTA
ACATCTATTCGCCTGATATCCAGGAAGTGATCGATGTTACGGATGGACGG
TTGCGGAATTTGTATGATGCCTTTGACAGGTACGTGTAGGAGGTAGGGGG
GGGACTGAGGGAGAGAGGAGGAAGGAGAGTAAGGCATGGAGGGAGACAGG
AAAGGAAGATTGGGAGATGCGACGGTTTGCGGTGGCATTCAGTTTACTTC
TACCCTTCCTGTTGACAATCCTGAAGGTGTTCACAATTTTGAGCGAGCAG
TAACCTACCACATCCCCCTCTTCCTCTCCCCCCTCCCCCCCCCGCTTTGC
TCCCTTTTTGCAACAGAGATTTTGACGGGCGTTTGAGCAAGCCGGAATTG
CTCCAAGGACTGGCACAGCAGGGTTTTCATAACCTGGAAGGAACGCGGGA
GTTTGAACTGTTGTGGGAGACATGCGAGAAAATCACCAAGAGTGACGGTG
GAGGAGGAGGAGGGGAAGGAAGAGGCGAGGAGGAGGAAGCGGAGGGGGTG
GGAGGGCCGGAGCTGGCAGGGGGAGGACGAGGTCGAGGAAAAGGAGGGAG
GGCAGTGGGAGGAGAGGAGAGCGATGAAAGAAAGGATGAGAATCGGATTA
CGTTTGCGGCTTTTAAGCGCATTGTGCAGCGTTTGAAGATGGAGTTGTTG
TTCTTGCCAGCGATGTGCCTGCGGGGGGGGGGGGGGGGTCCGGCACAAGA
GAAGGGGCAGAGAGGGAGGTTCAGGTGGGAGGGATGTGGGATAGTAGAAG
CTGTACTCCCGTTCCGTATGGAGCGCCCTTGGCTGTCTCGGTAG
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Coding sequence (CDS) from alignment at chr8:338050..339993+

>NO08G01070.1 ID=NO08G01070.1|Name=NO08G01070.1|organism=Nannochloropsis oceanica|type=CDS|length=762bp|location=Sequence derived from alignment at chr8:338050..339993+ (Nannochloropsis oceanica)
ATGTCTTCCTCCTCCGCATCCACCCCCTCTCACCAACATATCCATGCGGC
AACTGCCTCTGCCCGGGCCGCCGCTGCCGCTACCGCAGCTGCAGCTGCTG
CTCGGAGCATCAGCCATGCTGCGCAGCCTTTCTGGTCAGTCGATCAATTG
GATTGGTTGGACGCCTCGGTGTGGTCCACGATTGCCCAGCACGGACAACA
GATTAACATCTATTCGCCTGATATCCAGGAAGTGATCGATGTTACGGATG
GACGGTTGCGGAATTTGTATGATGCCTTTGACAGAGATTTTGACGGGCGT
TTGAGCAAGCCGGAATTGCTCCAAGGACTGGCACAGCAGGGTTTTCATAA
CCTGGAAGGAACGCGGGAGTTTGAACTGTTGTGGGAGACATGCGAGAAAA
TCACCAAGAGTGACGGTGGAGGAGGAGGAGGGGAAGGAAGAGGCGAGGAG
GAGGAAGCGGAGGGGGTGGGAGGGCCGGAGCTGGCAGGGGGAGGACGAGG
TCGAGGAAAAGGAGGGAGGGCAGTGGGAGGAGAGGAGAGCGATGAAAGAA
AGGATGAGAATCGGATTACGTTTGCGGCTTTTAAGCGCATTGTGCAGCGT
TTGAAGATGGAGTTGTTGTTCTTGCCAGCGATGTGCCTGCGGGGGGGGGG
GGGGGGTCCGGCACAAGAGAAGGGGCAGAGAGGGAGGTTCAGGTGGGAGG
GATGTGGGATAGTAGAAGCTGTACTCCCGTTCCGTATGGAGCGCCCTTGG
CTGTCTCGGTAG
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Synonyms
Publications