NO08G00840, NO08G00840 (gene) Nannochloropsis oceanica

Overview
NameNO08G00840
Unique NameNO08G00840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2269
Alignment locationchr8:276332..278600 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:276332..278600 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009604LsmAD_domain
Homology
The following BLAST results are available for this feature:
BLAST of NO08G00840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008974NSK008974Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G00840.1NO08G00840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|359752gene_3416Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G00840.1NO08G00840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G00840 ID=NO08G00840|Name=NO08G00840|organism=Nannochloropsis oceanica|type=gene|length=2269bp
ATGCGGGAGgttgggatcaattcgcggccaaccgggagaggtttggagtg
agggcggaattcgatgagaacctgtacacgacgcccaagCCAGCCGTGTC
GGCGGAGAAGGAGGCTAAGGCGGCAAGGATTGCGCGGGAGATTGAGGGGG
AGACGAGTCGGAATATGCACATGGCGGAGGAGAGGGGGCATGTGGTCCAG
AGTGATATGGATGAGGAGGATCGCTTTAGTGGTGTGTTGCAGCAGCCCCA
GCAGCAACAGCAAAAGGGAGGAGGGAGAGCCGAACAAGCATGGAGGACGG
CTACAGGTGGTGCTGGTGCTGCTGGTGGGGGTGGGAAGAAGAAGACGGTC
CTGCCCACCCCGACGGTTGCTGCTGTTGTCGCTGCAGGAGTGACGGGCAA
GAAGTACCTCCCACCCCAAATGCGAGGGTCGGCTCAGGATGAGGGCGGGC
TCCCGTCTCCTGCTGCTGCTGCTGCTGCTGCTGCTACTGCCGCGGCCCCT
GCAGACGCTCCTGCGAAACAGGTCTCGGCCACTGGAGGGAAAGCAGCAGC
AGCAGGAGCAGCATCAGCAGGGGCCACTGAGAACAAGAAGAAGGAGCAAG
CAACAGTCACCCCTCCTTCAGCTCCTGCCCCCACACCAGTTGCCAAGGAC
AGCAGCCAAACGCCTAGTCCTCCCTCCCGTGCCAGCCCCATTCCCAGCAC
CGCTTCCGCCCCCGCTGTCACTTTGGCTGCTGCTGCTGATGCCAAAGAAA
TGGAGGACGCCGAGAAGGAGGCAGCTGCCAAGAAACGGCTTTCGGCGGTT
GCGAAGGTGTTCGTGCCCTCAGGCATTCGCTCCTCCCCCTCACCCGTCGT
ATCCGGGGGACATATGCCTCCATCTATGCCTGGAGGGAGGGAAGGAGGGA
GCGGTCCACCCTCTAGCCCAATGATGGTTTCAAGGGCGGCGCCTTACACA
GCGTACAACCAGGGCGGGCCTGGAGGAGGTGGTGGAGGAGGAGGGTACGA
ACAGCAGCAACAGCAGCTGCCACCCAATCAGATGGGCGGAGGACCACTGA
ATGGTCATGGGGGAGGAGGGAGGGAGGGAGGAGCGGAGGGAGCCTACTAC
AGCCCACAACAGGGGGgtatgatgggcggcggtcgaccgtcttacggcca
catgcacgcgcacccagggcagcaaccacacccttcccatggcggtcccc
ccccgctcagcatgcccccctacattcgtggcccacatccctccctccct
ccctccatgccttctcacggctaccagcctccccacccccagtctgcccc
ccccctatgggagggaacgtctacattccaggagccggcccctcccttcc
tcctcctcaagGTGGAGGAATGCTCTACGGACAAGCGCCCATGTATGGTG
GAATGCAACACCATCCCCACGCATCCCCCCATCATGGGGGCGCCCTTTCC
CCTTCCATCCCTCCCCAGCAGCATCAACAGCAACAGCAGCCAGGAGGGAG
GTACCCCATGATGGCAGGAGGGCGTAGTCCTATGGGTGGCGCAGGAGGAG
GAGGGGGAGGAGGGCCGAGGGTGATGTCACACTACATGAGCCCACCCATG
GTGCCAAGACAAGGTGGGATATACGGAGAGATGGGGGGAGGAGGAGGAGG
GGAGGGAGGTATGGGTGGTGGTGGGAATCCCGGGGGAGGACCACCACAAC
AAGGAGGAGGAGGGGGAGGGATGGAGGGAGGGTATGGCGGACATATGCCG
CCTGAGGGAGAGTATGGTCAGTACCCGACTGTGTATTACTCAGGTCCCGG
GATGAGCCACCCTGGCATGGGAATGAGGGGAGGAAGAGGGGGAAGGACAC
CAAAGGGTGACAGGGGAGGAAGGGGGGGAGGAGGGATGATGGGAGGAGGG
GGATCGAAGCTGATGATGGGGATGAGTCGGGGAGGAGGGATGATGAAGCA
GAGGGTGGGGGGGCATTCGCCTTACCCACATGGGCCGCATCACCAACAGC
AGCAGATGTATATGCCTCAGCAGGGAGGGCAGCAACCACCGCCACCAGCG
CAGATGAGTGGGGGTGGGGGAGGTCCGCCTTCGCAGCAGCACCCGCAACA
TAACCAACAGACGTCCCCACCTGTCAACGAGGGTGACGTGGTTCCTCCCA
TCTCTCCCTCTGGCAAGGGCTTTGAGCCTGCTCCTTCCCCGGCGCAACCG
AAGGCCTCTTCTCCTCCTCCTTCCTCTCCTTCCTCAAAGGAAGAGTCAGC
AACCGCGGCTGAGACGTGA
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protein sequence of NO08G00840.1

>NO08G00840.1-protein ID=NO08G00840.1-protein|Name=NO08G00840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=648bp
MREPAVSAEKEAKAARIAREIEGETSRNMHMAEERGHVVQSDMDEEDRFS
GVLQQPQQQQQKGGGRAEQAWRTATGGAGAAGGGGKKKTVLPTPTVAAVV
AAGVTGKKYLPPQMRGSAQDEGGLPSPAAAAAAAATAAAPADAPAKQVSA
TGGKAAAAGAASAGATENKKKEQATVTPPSAPAPTPVAKDSSQTPSPPSR
ASPIPSTASAPAVTLAAAADAKEMEDAEKEAAAKKRLSAVAKVFVPSGIR
SSPSPVVSGGHMPPSMPGGREGGSGPPSSPMMVSRAAPYTAYNQGGPGGG
GGGGGYEQQQQQLPPNQMGGGPLNGHGGGGREGGAEGAYYSPQQGGGGML
YGQAPMYGGMQHHPHASPHHGGALSPSIPPQQHQQQQQPGGRYPMMAGGR
SPMGGAGGGGGGGPRVMSHYMSPPMVPRQGGIYGEMGGGGGGEGGMGGGG
NPGGGPPQQGGGGGGMEGGYGGHMPPEGEYGQYPTVYYSGPGMSHPGMGM
RGGRGGRTPKGDRGGRGGGGMMGGGGSKLMMGMSRGGGMMKQRVGGHSPY
PHGPHHQQQQMYMPQQGGQQPPPPAQMSGGGGGPPSQQHPQHNQQTSPPV
NEGDVVPPISPSGKGFEPAPSPAQPKASSPPPSSPSSKEESATAAET*
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Synonyms
Publications