NO08G00840.1, NO08G00840.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO08G00840.1
Unique Name	NO08G00840.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1944
Alignment location	chr8:276332..278600 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr8	genome	chr8:276332..278600 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO08G00840.1 vs.
Match: EWM26548.1 (hypothetical protein Naga_100084g23 [Nannochloropsis gaditana])

HSP 1 Score: 90.9 bits (224), Expect = 1.600e-14
Identity = 80/168 (47.62%), Postives = 91/168 (54.17%), Query Frame = 0

Query:  478 GEYGQYPTVYYSGPGMSHPGMGMRGGRGGRTPKGDRGGRGGGGMMGGGGSKLMMGMSRGGGMMKQRVGGHSPYPHGPHHQQQQMYMPQQGGQQPPPPAQMSGGGGGPPSQQHPQHNQQTSPPVNEGDVVPPISPSGKGFEPA--PSPAQPKASSPPPSSPSSKEESAT 644
            G  G YP   Y G GM HPGMG RGGRGGRTPKGD   RG GG +GGG     +    G G  K R  GH   PHG        Y+P Q  QQ  P      G  GP + Q P      SP  +E DVVPPISPSGKGFEP   P+PAQ  +S+ PP+S + +  S T
Sbjct:    2 GPGGHYPAAMYGGMGMGHPGMGGRGGRGGRTPKGD---RGRGGFLGGGKG---LAGGPGRGTAKARGSGHMGVPHG--------YIPYQ--QQSSPQVAPGPGANGPAASQAP-----PSPAAHEHDVVPPISPSGKGFEPTGRPAPAQGASSAQPPTSSTYRTSSVT 148

The following BLAST results are available for this feature:

BLAST of NO08G00840.1 vs.

BLAST of NO08G00840.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM26548.1	1.600e-14	47.62	hypothetical protein Naga_100084g23 [Nannochlorops...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO08G00840	NO08G00840	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO08G00840.1	NO08G00840.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO08G00840.1.cds1	NO08G00840.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G00840.1.cds2	NO08G00840.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G00840.1.cds3	NO08G00840.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr8:276332..278600-
coding sequence from alignment at chr8:276332..278600-

mRNA sequence

>NO08G00840.1 ID=NO08G00840.1|Name=NO08G00840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1944bp
ATGCGGGAGCCAGCCGTGTCGGCGGAGAAGGAGGCTAAGGCGGCAAGGAT
TGCGCGGGAGATTGAGGGGGAGACGAGTCGGAATATGCACATGGCGGAGG
AGAGGGGGCATGTGGTCCAGAGTGATATGGATGAGGAGGATCGCTTTAGT
GGTGTGTTGCAGCAGCCCCAGCAGCAACAGCAAAAGGGAGGAGGGAGAGC
CGAACAAGCATGGAGGACGGCTACAGGTGGTGCTGGTGCTGCTGGTGGGG
GTGGGAAGAAGAAGACGGTCCTGCCCACCCCGACGGTTGCTGCTGTTGTC
GCTGCAGGAGTGACGGGCAAGAAGTACCTCCCACCCCAAATGCGAGGGTC
GGCTCAGGATGAGGGCGGGCTCCCGTCTCCTGCTGCTGCTGCTGCTGCTG
CTGCTACTGCCGCGGCCCCTGCAGACGCTCCTGCGAAACAGGTCTCGGCC
ACTGGAGGGAAAGCAGCAGCAGCAGGAGCAGCATCAGCAGGGGCCACTGA
GAACAAGAAGAAGGAGCAAGCAACAGTCACCCCTCCTTCAGCTCCTGCCC
CCACACCAGTTGCCAAGGACAGCAGCCAAACGCCTAGTCCTCCCTCCCGT
GCCAGCCCCATTCCCAGCACCGCTTCCGCCCCCGCTGTCACTTTGGCTGC
TGCTGCTGATGCCAAAGAAATGGAGGACGCCGAGAAGGAGGCAGCTGCCA
AGAAACGGCTTTCGGCGGTTGCGAAGGTGTTCGTGCCCTCAGGCATTCGC
TCCTCCCCCTCACCCGTCGTATCCGGGGGACATATGCCTCCATCTATGCC
TGGAGGGAGGGAAGGAGGGAGCGGTCCACCCTCTAGCCCAATGATGGTTT
CAAGGGCGGCGCCTTACACAGCGTACAACCAGGGCGGGCCTGGAGGAGGT
GGTGGAGGAGGAGGGTACGAACAGCAGCAACAGCAGCTGCCACCCAATCA
GATGGGCGGAGGACCACTGAATGGTCATGGGGGAGGAGGGAGGGAGGGAG
GAGCGGAGGGAGCCTACTACAGCCCACAACAGGGGGGTGGAGGAATGCTC
TACGGACAAGCGCCCATGTATGGTGGAATGCAACACCATCCCCACGCATC
CCCCCATCATGGGGGCGCCCTTTCCCCTTCCATCCCTCCCCAGCAGCATC
AACAGCAACAGCAGCCAGGAGGGAGGTACCCCATGATGGCAGGAGGGCGT
AGTCCTATGGGTGGCGCAGGAGGAGGAGGGGGAGGAGGGCCGAGGGTGAT
GTCACACTACATGAGCCCACCCATGGTGCCAAGACAAGGTGGGATATACG
GAGAGATGGGGGGAGGAGGAGGAGGGGAGGGAGGTATGGGTGGTGGTGGG
AATCCCGGGGGAGGACCACCACAACAAGGAGGAGGAGGGGGAGGGATGGA
GGGAGGGTATGGCGGACATATGCCGCCTGAGGGAGAGTATGGTCAGTACC
CGACTGTGTATTACTCAGGTCCCGGGATGAGCCACCCTGGCATGGGAATG
AGGGGAGGAAGAGGGGGAAGGACACCAAAGGGTGACAGGGGAGGAAGGGG
GGGAGGAGGGATGATGGGAGGAGGGGGATCGAAGCTGATGATGGGGATGA
GTCGGGGAGGAGGGATGATGAAGCAGAGGGTGGGGGGGCATTCGCCTTAC
CCACATGGGCCGCATCACCAACAGCAGCAGATGTATATGCCTCAGCAGGG
AGGGCAGCAACCACCGCCACCAGCGCAGATGAGTGGGGGTGGGGGAGGTC
CGCCTTCGCAGCAGCACCCGCAACATAACCAACAGACGTCCCCACCTGTC
AACGAGGGTGACGTGGTTCCTCCCATCTCTCCCTCTGGCAAGGGCTTTGA
GCCTGCTCCTTCCCCGGCGCAACCGAAGGCCTCTTCTCCTCCTCCTTCCT
CTCCTTCCTCAAAGGAAGAGTCAGCAACCGCGGCTGAGACGTGA

protein sequence of NO08G00840.1

>NO08G00840.1-protein ID=NO08G00840.1-protein|Name=NO08G00840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=648bp
MREPAVSAEKEAKAARIAREIEGETSRNMHMAEERGHVVQSDMDEEDRFS
GVLQQPQQQQQKGGGRAEQAWRTATGGAGAAGGGGKKKTVLPTPTVAAVV
AAGVTGKKYLPPQMRGSAQDEGGLPSPAAAAAAAATAAAPADAPAKQVSA
TGGKAAAAGAASAGATENKKKEQATVTPPSAPAPTPVAKDSSQTPSPPSR
ASPIPSTASAPAVTLAAAADAKEMEDAEKEAAAKKRLSAVAKVFVPSGIR
SSPSPVVSGGHMPPSMPGGREGGSGPPSSPMMVSRAAPYTAYNQGGPGGG
GGGGGYEQQQQQLPPNQMGGGPLNGHGGGGREGGAEGAYYSPQQGGGGML
YGQAPMYGGMQHHPHASPHHGGALSPSIPPQQHQQQQQPGGRYPMMAGGR
SPMGGAGGGGGGGPRVMSHYMSPPMVPRQGGIYGEMGGGGGGEGGMGGGG
NPGGGPPQQGGGGGGMEGGYGGHMPPEGEYGQYPTVYYSGPGMSHPGMGM
RGGRGGRTPKGDRGGRGGGGMMGGGGSKLMMGMSRGGGMMKQRVGGHSPY
PHGPHHQQQQMYMPQQGGQQPPPPAQMSGGGGGPPSQQHPQHNQQTSPPV
NEGDVVPPISPSGKGFEPAPSPAQPKASSPPPSSPSSKEESATAAET*

mRNA from alignment at chr8:276332..278600-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO08G00840.1 ID=NO08G00840.1|Name=NO08G00840.1|organism=Nannochloropsis oceanica|type=mRNA|length=2269bp|location=Sequence derived from alignment at chr8:276332..278600- (Nannochloropsis oceanica)
ATGCGGGAGGTTGGGATCAATTCGCGGCCAACCGGGAGAGGTTTGGAGTG
AGGGCGGAATTCGATGAGAACCTGTACACGACGCCCAAGCCAGCCGTGTC
GGCGGAGAAGGAGGCTAAGGCGGCAAGGATTGCGCGGGAGATTGAGGGGG
AGACGAGTCGGAATATGCACATGGCGGAGGAGAGGGGGCATGTGGTCCAG
AGTGATATGGATGAGGAGGATCGCTTTAGTGGTGTGTTGCAGCAGCCCCA
GCAGCAACAGCAAAAGGGAGGAGGGAGAGCCGAACAAGCATGGAGGACGG
CTACAGGTGGTGCTGGTGCTGCTGGTGGGGGTGGGAAGAAGAAGACGGTC
CTGCCCACCCCGACGGTTGCTGCTGTTGTCGCTGCAGGAGTGACGGGCAA
GAAGTACCTCCCACCCCAAATGCGAGGGTCGGCTCAGGATGAGGGCGGGC
TCCCGTCTCCTGCTGCTGCTGCTGCTGCTGCTGCTACTGCCGCGGCCCCT
GCAGACGCTCCTGCGAAACAGGTCTCGGCCACTGGAGGGAAAGCAGCAGC
AGCAGGAGCAGCATCAGCAGGGGCCACTGAGAACAAGAAGAAGGAGCAAG
CAACAGTCACCCCTCCTTCAGCTCCTGCCCCCACACCAGTTGCCAAGGAC
AGCAGCCAAACGCCTAGTCCTCCCTCCCGTGCCAGCCCCATTCCCAGCAC
CGCTTCCGCCCCCGCTGTCACTTTGGCTGCTGCTGCTGATGCCAAAGAAA
TGGAGGACGCCGAGAAGGAGGCAGCTGCCAAGAAACGGCTTTCGGCGGTT
GCGAAGGTGTTCGTGCCCTCAGGCATTCGCTCCTCCCCCTCACCCGTCGT
ATCCGGGGGACATATGCCTCCATCTATGCCTGGAGGGAGGGAAGGAGGGA
GCGGTCCACCCTCTAGCCCAATGATGGTTTCAAGGGCGGCGCCTTACACA
GCGTACAACCAGGGCGGGCCTGGAGGAGGTGGTGGAGGAGGAGGGTACGA
ACAGCAGCAACAGCAGCTGCCACCCAATCAGATGGGCGGAGGACCACTGA
ATGGTCATGGGGGAGGAGGGAGGGAGGGAGGAGCGGAGGGAGCCTACTAC
AGCCCACAACAGGGGGGTATGATGGGCGGCGGTCGACCGTCTTACGGCCA
CATGCACGCGCACCCAGGGCAGCAACCACACCCTTCCCATGGCGGTCCCC
CCCCGCTCAGCATGCCCCCCTACATTCGTGGCCCACATCCCTCCCTCCCT
CCCTCCATGCCTTCTCACGGCTACCAGCCTCCCCACCCCCAGTCTGCCCC
CCCCCTATGGGAGGGAACGTCTACATTCCAGGAGCCGGCCCCTCCCTTCC
TCCTCCTCAAGGTGGAGGAATGCTCTACGGACAAGCGCCCATGTATGGTG
GAATGCAACACCATCCCCACGCATCCCCCCATCATGGGGGCGCCCTTTCC
CCTTCCATCCCTCCCCAGCAGCATCAACAGCAACAGCAGCCAGGAGGGAG
GTACCCCATGATGGCAGGAGGGCGTAGTCCTATGGGTGGCGCAGGAGGAG
GAGGGGGAGGAGGGCCGAGGGTGATGTCACACTACATGAGCCCACCCATG
GTGCCAAGACAAGGTGGGATATACGGAGAGATGGGGGGAGGAGGAGGAGG
GGAGGGAGGTATGGGTGGTGGTGGGAATCCCGGGGGAGGACCACCACAAC
AAGGAGGAGGAGGGGGAGGGATGGAGGGAGGGTATGGCGGACATATGCCG
CCTGAGGGAGAGTATGGTCAGTACCCGACTGTGTATTACTCAGGTCCCGG
GATGAGCCACCCTGGCATGGGAATGAGGGGAGGAAGAGGGGGAAGGACAC
CAAAGGGTGACAGGGGAGGAAGGGGGGGAGGAGGGATGATGGGAGGAGGG
GGATCGAAGCTGATGATGGGGATGAGTCGGGGAGGAGGGATGATGAAGCA
GAGGGTGGGGGGGCATTCGCCTTACCCACATGGGCCGCATCACCAACAGC
AGCAGATGTATATGCCTCAGCAGGGAGGGCAGCAACCACCGCCACCAGCG
CAGATGAGTGGGGGTGGGGGAGGTCCGCCTTCGCAGCAGCACCCGCAACA
TAACCAACAGACGTCCCCACCTGTCAACGAGGGTGACGTGGTTCCTCCCA
TCTCTCCCTCTGGCAAGGGCTTTGAGCCTGCTCCTTCCCCGGCGCAACCG
AAGGCCTCTTCTCCTCCTCCTTCCTCTCCTTCCTCAAAGGAAGAGTCAGC
AACCGCGGCTGAGACGTGA

Coding sequence (CDS) from alignment at chr8:276332..278600-

>NO08G00840.1 ID=NO08G00840.1|Name=NO08G00840.1|organism=Nannochloropsis oceanica|type=CDS|length=1944bp|location=Sequence derived from alignment at chr8:276332..278600- (Nannochloropsis oceanica)
ATGCGGGAGCCAGCCGTGTCGGCGGAGAAGGAGGCTAAGGCGGCAAGGAT
TGCGCGGGAGATTGAGGGGGAGACGAGTCGGAATATGCACATGGCGGAGG
AGAGGGGGCATGTGGTCCAGAGTGATATGGATGAGGAGGATCGCTTTAGT
GGTGTGTTGCAGCAGCCCCAGCAGCAACAGCAAAAGGGAGGAGGGAGAGC
CGAACAAGCATGGAGGACGGCTACAGGTGGTGCTGGTGCTGCTGGTGGGG
GTGGGAAGAAGAAGACGGTCCTGCCCACCCCGACGGTTGCTGCTGTTGTC
GCTGCAGGAGTGACGGGCAAGAAGTACCTCCCACCCCAAATGCGAGGGTC
GGCTCAGGATGAGGGCGGGCTCCCGTCTCCTGCTGCTGCTGCTGCTGCTG
CTGCTACTGCCGCGGCCCCTGCAGACGCTCCTGCGAAACAGGTCTCGGCC
ACTGGAGGGAAAGCAGCAGCAGCAGGAGCAGCATCAGCAGGGGCCACTGA
GAACAAGAAGAAGGAGCAAGCAACAGTCACCCCTCCTTCAGCTCCTGCCC
CCACACCAGTTGCCAAGGACAGCAGCCAAACGCCTAGTCCTCCCTCCCGT
GCCAGCCCCATTCCCAGCACCGCTTCCGCCCCCGCTGTCACTTTGGCTGC
TGCTGCTGATGCCAAAGAAATGGAGGACGCCGAGAAGGAGGCAGCTGCCA
AGAAACGGCTTTCGGCGGTTGCGAAGGTGTTCGTGCCCTCAGGCATTCGC
TCCTCCCCCTCACCCGTCGTATCCGGGGGACATATGCCTCCATCTATGCC
TGGAGGGAGGGAAGGAGGGAGCGGTCCACCCTCTAGCCCAATGATGGTTT
CAAGGGCGGCGCCTTACACAGCGTACAACCAGGGCGGGCCTGGAGGAGGT
GGTGGAGGAGGAGGGTACGAACAGCAGCAACAGCAGCTGCCACCCAATCA
GATGGGCGGAGGACCACTGAATGGTCATGGGGGAGGAGGGAGGGAGGGAG
GAGCGGAGGGAGCCTACTACAGCCCACAACAGGGGGGTGGAGGAATGCTC
TACGGACAAGCGCCCATGTATGGTGGAATGCAACACCATCCCCACGCATC
CCCCCATCATGGGGGCGCCCTTTCCCCTTCCATCCCTCCCCAGCAGCATC
AACAGCAACAGCAGCCAGGAGGGAGGTACCCCATGATGGCAGGAGGGCGT
AGTCCTATGGGTGGCGCAGGAGGAGGAGGGGGAGGAGGGCCGAGGGTGAT
GTCACACTACATGAGCCCACCCATGGTGCCAAGACAAGGTGGGATATACG
GAGAGATGGGGGGAGGAGGAGGAGGGGAGGGAGGTATGGGTGGTGGTGGG
AATCCCGGGGGAGGACCACCACAACAAGGAGGAGGAGGGGGAGGGATGGA
GGGAGGGTATGGCGGACATATGCCGCCTGAGGGAGAGTATGGTCAGTACC
CGACTGTGTATTACTCAGGTCCCGGGATGAGCCACCCTGGCATGGGAATG
AGGGGAGGAAGAGGGGGAAGGACACCAAAGGGTGACAGGGGAGGAAGGGG
GGGAGGAGGGATGATGGGAGGAGGGGGATCGAAGCTGATGATGGGGATGA
GTCGGGGAGGAGGGATGATGAAGCAGAGGGTGGGGGGGCATTCGCCTTAC
CCACATGGGCCGCATCACCAACAGCAGCAGATGTATATGCCTCAGCAGGG
AGGGCAGCAACCACCGCCACCAGCGCAGATGAGTGGGGGTGGGGGAGGTC
CGCCTTCGCAGCAGCACCCGCAACATAACCAACAGACGTCCCCACCTGTC
AACGAGGGTGACGTGGTTCCTCCCATCTCTCCCTCTGGCAAGGGCTTTGA
GCCTGCTCCTTCCCCGGCGCAACCGAAGGCCTCTTCTCCTCCTCCTTCCT
CTCCTTCCTCAAAGGAAGAGTCAGCAACCGCGGCTGAGACGTGA

Synonyms

Publications