NO08G00710, NO08G00710 (gene) Nannochloropsis oceanica

Overview
NameNO08G00710
Unique NameNO08G00710
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1233
Alignment locationchr8:239680..240912 -

Link to JBrowse

Properties
Property NameValue
DescriptionKatanin p60 atpase-containing subunit
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:239680..240912 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
Homology
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BLAST of NO08G00710 vs. NCBI_GenBank
Match: EWM26552.1 (katanin p60 atpase-containing subunit [Nannochloropsis gaditana])

HSP 1 Score: 189.5 bits (480), Expect = 2.000e-44
Identity = 159/249 (63.86%), Postives = 180/249 (72.29%), Query Frame = 0 
Query:  130 GAPPGVTMGPDGMPLFQGMPMVPAYQITFAFPPLNIN--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFARWFSKKGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLDTSPSPSEQDALLSLFEDCLLLPTKDATLKARWDKLIADDNERHNAKRTYSLLKNALVLHRLLCPDLTPSNPLLYKVQLKAGAETLKVLSTAIEVDVG 371
            GAPPGVT+GP+G+P + G PMVPAYQITFAFPPL  N        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PFARWFSKKG+                                              DT PS + Q+ALL LFED LLLPTKD++L+ARWDKL+ADD+ER+NAKR Y++LK AL LHRLLCPDL+P++PLLYKVQL+AGAETLKVL TA+EV+VG
Sbjct:  112 GAPPGVTLGPNGLPHYMGSPMVPAYQITFAFPPLEGNAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPFARWFSKKGEASSFPSSTPASPPRRSASAHGRGRTRRVASPLSLPSDSSLS-----DTPPSLAAQEALLGLFEDVLLLPTKDSSLRARWDKLVADDHERYNAKRAYAILKQALALHRLLCPDLSPTHPLLYKVQLQAGAETLKVLETAVEVEVG 355
The following BLAST results are available for this feature:
BLAST of NO08G00710 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26552.12.000e-4463.86katanin p60 atpase-containing subunit [Nannochloro... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G00710.1NO08G00710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G00710.1NO08G00710.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G00710 ID=NO08G00710|Name=NO08G00710|organism=Nannochloropsis oceanica|type=gene|length=1233bp
ACGGGGGGGCTGAGTGGAGAGAAGTCGGAGGAGAGGGAGGGGGTAGAGGA
GGTGAGAGGGATGGAGTCGGGGAAGGAAGAAGATGAGGAGGAGGAAGAAG
CAGAGGAAGACGAGGACGAAGATGAGGACGAGGACGAGGAGGACGATGAG
GACTCGTTGACGCATCGAAGTGATCGGGCCGCGGCCGAGAGCTCCGCATT
GGCTCAGCTCGCCCAGATGCTCGAAACCCTCAATAAAAACGAGAACTTCC
ACCGCGCCCTCCAAGCCCACGTGGCACATCAACACCACCAACTTCAACAG
CTGGGTCTCGCCCCCTCATCCTCCCCCTCTTCCTCTTCCACATCTCAACC
TCCCCCGGCTGGCATGGGGAATCCAAACCCCGCCGCGGCTCACCTGCACC
AGCAATTTTACCACCACCACATGCAGCAGCAGCAGCAGCAGATTTCAGGG
GCACCGCCAGGTGTGACGATGGGTCCAGATGGGATGCCCCTCTTCCAAGG
CATGCCCATGGTGCCTGCTTATCAGATCACTTTCGCCTTTCCCCCCCTTA
ATATCAACCCTCCTCCTCCTTCCTCTCGCACGCCCACCGGGGCCGGGGCC
GGGGCCAAAAAGAGGAAGGGCACTACCGCTGCCGCTGCCGCTGCTGCTTT
TTCACCCAATGCATCGACAAGGAAGGGGGGAGGAGGAGGAGGGGGAGGGA
GCTTACCTTTCGCCCGTTGGTTCAGCAAGAAGGGCGATCCGTCCACCCCT
TCCTCCTCCCCTTCCTCCTCCAATACTTACCCCCTCAAACGCACCCGTTC
CAATCGAAAATCATCCTCCTCCTCCTCCTCCCCCTCCTCCTCCTCCTCCC
TTCCCCCTTCCTTCCCTCCCGACCTCGACACCTCCCCCTCCCCCTCCGAG
CAAGATGCCCTCCTCTCCCTCTTCGAAGACTGCCTCCTCCTCCCCACCAA
GGACGCAACCCTCAAAGCCCGGTGGGACAAGTTGATCGCCGACGACAACG
AGCGACACAACGCTAAGCGCACCTACTCCCTGCTCAAAAACGCCCTCGTC
CTCCACCGGCTCCTGTGCCCGGACCTTACCCCTTCCAACCCCCTCCTCTA
TAAGGTCCAACTTAAGGCAGGGGCCGAAACCCTGAAGGTTCTCAGCACCG
CTATTGAAGTTGACGTAGGGGGAGGCGGCGGGGGAGGAAAGGCGGGAGGG
GGGGTAGTTCCGCGGGGGGGCTACCCAAGATAG
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protein sequence of NO08G00710.1

>NO08G00710.1-protein ID=NO08G00710.1-protein|Name=NO08G00710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=391bp
MESGKEEDEEEEEAEEDEDEDEDEDEEDDEDSLTHRSDRAAAESSALAQL
AQMLETLNKNENFHRALQAHVAHQHHQLQQLGLAPSSSPSSSSTSQPPPA
GMGNPNPAAAHLHQQFYHHHMQQQQQQISGAPPGVTMGPDGMPLFQGMPM
VPAYQITFAFPPLNINPPPPSSRTPTGAGAGAKKRKGTTAAAAAAAFSPN
ASTRKGGGGGGGGSLPFARWFSKKGDPSTPSSSPSSSNTYPLKRTRSNRK
SSSSSSSPSSSSSLPPSFPPDLDTSPSPSEQDALLSLFEDCLLLPTKDAT
LKARWDKLIADDNERHNAKRTYSLLKNALVLHRLLCPDLTPSNPLLYKVQ
LKAGAETLKVLSTAIEVDVGGGGGGGKAGGGVVPRGGYPR*
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Synonyms
Publications