NO08G00710.1, NO08G00710.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G00710.1
Unique NameNO08G00710.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1233
Alignment locationchr8:239680..240912 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:239680..240912 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G00710.1 vs.
Match: EWM26552.1 (katanin p60 atpase-containing subunit [Nannochloropsis gaditana])

HSP 1 Score: 334.7 bits (857), Expect = 3.800e-88
Identity = 220/380 (57.89%), Postives = 259/380 (68.16%), Query Frame = 0 
Query:   42 AESSALAQLAQMLETLNKNENFHRALQAHVAHQHHQLQQLGLAPSSSPSSSSTSQ--PPPAGMGNPNPAAAHLH---QQFYHHHMQQQQQQ----------------ISGAPPGVTMGPDGMPLFQGMPMVPAYQITFAFPPLNINPPPPSSRTPTGAGAG---AKKRKGTTAAAAAAAFSPNASTRKG-----GGGGGGGSLPFARWFSKKGDPST-PSSSPSSSNTYPLKRTRS------NRKSSSSSSSPSSSSSLPPSFPPDLDTSPSPSEQDALLSLFEDCLLLPTKDATLKARWDKLIADDNERHNAKRTYSLLKNALVLHRLLCPDLTPSNPLLYKVQLKAGAETLKVLSTAIEVDVGGGGGGGKAGGGVVPR 386
            AES+AL+QLAQMLE LNKNENFH+ALQAHV  QH QLQQ+GLAP S PSS   S   PPPAGM NPNPAAA LH   QQ  H   QQQQQQ                I GAPPGVT+GP+G+P + G PMVPAYQITFAFPPL  N    SS   + A      A++RK  + AAA+A        RKG     GGGGGGG LPFARWFSKKG+ S+ PSS+P+S    P +R+ S       R+ +S  S PS SS          DT PS + Q+ALL LFED LLLPTKD++L+ARWDKL+ADD+ER+NAKR Y++LK AL LHRLLCPDL+P++PLLYKVQL+AGAETLKVL TA+EV+VG  G  G +G G +PR
Sbjct:    3 AESAALSQLAQMLENLNKNENFHKALQAHVVAQHQQLQQMGLAPPSRPSSFPPSPFPPPPAGMANPNPAAAALHLRYQQLQHLQQQQQQQQQQQQQQQQQQQQQQPQIPGAPPGVTLGPNGLPHYMGSPMVPAYQITFAFPPLEGNAALSSSSPSSAASPAPSPARRRKNASTAAASAGRRDRTGPRKGASGREGGGGGGGGLPFARWFSKKGEASSFPSSTPAS----PPRRSASAHGRGRTRRVASPLSLPSDSSLS--------DTPPSLAAQEALLGLFEDVLLLPTKDSSLRARWDKLVADDHERYNAKRAYAILKQALALHRLLCPDLSPTHPLLYKVQLQAGAETLKVLETAVEVEVGKRGEEGHSGEGGLPR 370
The following BLAST results are available for this feature:
BLAST of NO08G00710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26552.13.800e-8857.89katanin p60 atpase-containing subunit [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G00710NO08G00710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G00710.1NO08G00710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G00710.1.cds1NO08G00710.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G00710.1 ID=NO08G00710.1|Name=NO08G00710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1233bp
ACGGGGGGGCTGAGTGGAGAGAAGTCGGAGGAGAGGGAGGGGGTAGAGGA
GGTGAGAGGGATGGAGTCGGGGAAGGAAGAAGATGAGGAGGAGGAAGAAG
CAGAGGAAGACGAGGACGAAGATGAGGACGAGGACGAGGAGGACGATGAG
GACTCGTTGACGCATCGAAGTGATCGGGCCGCGGCCGAGAGCTCCGCATT
GGCTCAGCTCGCCCAGATGCTCGAAACCCTCAATAAAAACGAGAACTTCC
ACCGCGCCCTCCAAGCCCACGTGGCACATCAACACCACCAACTTCAACAG
CTGGGTCTCGCCCCCTCATCCTCCCCCTCTTCCTCTTCCACATCTCAACC
TCCCCCGGCTGGCATGGGGAATCCAAACCCCGCCGCGGCTCACCTGCACC
AGCAATTTTACCACCACCACATGCAGCAGCAGCAGCAGCAGATTTCAGGG
GCACCGCCAGGTGTGACGATGGGTCCAGATGGGATGCCCCTCTTCCAAGG
CATGCCCATGGTGCCTGCTTATCAGATCACTTTCGCCTTTCCCCCCCTTA
ATATCAACCCTCCTCCTCCTTCCTCTCGCACGCCCACCGGGGCCGGGGCC
GGGGCCAAAAAGAGGAAGGGCACTACCGCTGCCGCTGCCGCTGCTGCTTT
TTCACCCAATGCATCGACAAGGAAGGGGGGAGGAGGAGGAGGGGGAGGGA
GCTTACCTTTCGCCCGTTGGTTCAGCAAGAAGGGCGATCCGTCCACCCCT
TCCTCCTCCCCTTCCTCCTCCAATACTTACCCCCTCAAACGCACCCGTTC
CAATCGAAAATCATCCTCCTCCTCCTCCTCCCCCTCCTCCTCCTCCTCCC
TTCCCCCTTCCTTCCCTCCCGACCTCGACACCTCCCCCTCCCCCTCCGAG
CAAGATGCCCTCCTCTCCCTCTTCGAAGACTGCCTCCTCCTCCCCACCAA
GGACGCAACCCTCAAAGCCCGGTGGGACAAGTTGATCGCCGACGACAACG
AGCGACACAACGCTAAGCGCACCTACTCCCTGCTCAAAAACGCCCTCGTC
CTCCACCGGCTCCTGTGCCCGGACCTTACCCCTTCCAACCCCCTCCTCTA
TAAGGTCCAACTTAAGGCAGGGGCCGAAACCCTGAAGGTTCTCAGCACCG
CTATTGAAGTTGACGTAGGGGGAGGCGGCGGGGGAGGAAAGGCGGGAGGG
GGGGTAGTTCCGCGGGGGGGCTACCCAAGATAG
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protein sequence of NO08G00710.1

>NO08G00710.1-protein ID=NO08G00710.1-protein|Name=NO08G00710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=391bp
MESGKEEDEEEEEAEEDEDEDEDEDEEDDEDSLTHRSDRAAAESSALAQL
AQMLETLNKNENFHRALQAHVAHQHHQLQQLGLAPSSSPSSSSTSQPPPA
GMGNPNPAAAHLHQQFYHHHMQQQQQQISGAPPGVTMGPDGMPLFQGMPM
VPAYQITFAFPPLNINPPPPSSRTPTGAGAGAKKRKGTTAAAAAAAFSPN
ASTRKGGGGGGGGSLPFARWFSKKGDPSTPSSSPSSSNTYPLKRTRSNRK
SSSSSSSPSSSSSLPPSFPPDLDTSPSPSEQDALLSLFEDCLLLPTKDAT
LKARWDKLIADDNERHNAKRTYSLLKNALVLHRLLCPDLTPSNPLLYKVQ
LKAGAETLKVLSTAIEVDVGGGGGGGKAGGGVVPRGGYPR*
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mRNA from alignment at chr8:239680..240912-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G00710.1 ID=NO08G00710.1|Name=NO08G00710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1233bp|location=Sequence derived from alignment at chr8:239680..240912- (Nannochloropsis oceanica)
ACGGGGGGGCTGAGTGGAGAGAAGTCGGAGGAGAGGGAGGGGGTAGAGGA
GGTGAGAGGGATGGAGTCGGGGAAGGAAGAAGATGAGGAGGAGGAAGAAG
CAGAGGAAGACGAGGACGAAGATGAGGACGAGGACGAGGAGGACGATGAG
GACTCGTTGACGCATCGAAGTGATCGGGCCGCGGCCGAGAGCTCCGCATT
GGCTCAGCTCGCCCAGATGCTCGAAACCCTCAATAAAAACGAGAACTTCC
ACCGCGCCCTCCAAGCCCACGTGGCACATCAACACCACCAACTTCAACAG
CTGGGTCTCGCCCCCTCATCCTCCCCCTCTTCCTCTTCCACATCTCAACC
TCCCCCGGCTGGCATGGGGAATCCAAACCCCGCCGCGGCTCACCTGCACC
AGCAATTTTACCACCACCACATGCAGCAGCAGCAGCAGCAGATTTCAGGG
GCACCGCCAGGTGTGACGATGGGTCCAGATGGGATGCCCCTCTTCCAAGG
CATGCCCATGGTGCCTGCTTATCAGATCACTTTCGCCTTTCCCCCCCTTA
ATATCAACCCTCCTCCTCCTTCCTCTCGCACGCCCACCGGGGCCGGGGCC
GGGGCCAAAAAGAGGAAGGGCACTACCGCTGCCGCTGCCGCTGCTGCTTT
TTCACCCAATGCATCGACAAGGAAGGGGGGAGGAGGAGGAGGGGGAGGGA
GCTTACCTTTCGCCCGTTGGTTCAGCAAGAAGGGCGATCCGTCCACCCCT
TCCTCCTCCCCTTCCTCCTCCAATACTTACCCCCTCAAACGCACCCGTTC
CAATCGAAAATCATCCTCCTCCTCCTCCTCCCCCTCCTCCTCCTCCTCCC
TTCCCCCTTCCTTCCCTCCCGACCTCGACACCTCCCCCTCCCCCTCCGAG
CAAGATGCCCTCCTCTCCCTCTTCGAAGACTGCCTCCTCCTCCCCACCAA
GGACGCAACCCTCAAAGCCCGGTGGGACAAGTTGATCGCCGACGACAACG
AGCGACACAACGCTAAGCGCACCTACTCCCTGCTCAAAAACGCCCTCGTC
CTCCACCGGCTCCTGTGCCCGGACCTTACCCCTTCCAACCCCCTCCTCTA
TAAGGTCCAACTTAAGGCAGGGGCCGAAACCCTGAAGGTTCTCAGCACCG
CTATTGAAGTTGACGTAGGGGGAGGCGGCGGGGGAGGAAAGGCGGGAGGG
GGGGTAGTTCCGCGGGGGGGCTACCCAAGATAG
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Coding sequence (CDS) from alignment at chr8:239680..240912-

>NO08G00710.1 ID=NO08G00710.1|Name=NO08G00710.1|organism=Nannochloropsis oceanica|type=CDS|length=1173bp|location=Sequence derived from alignment at chr8:239680..240912- (Nannochloropsis oceanica)
ATGGAGTCGGGGAAGGAAGAAGATGAGGAGGAGGAAGAAGCAGAGGAAGA
CGAGGACGAAGATGAGGACGAGGACGAGGAGGACGATGAGGACTCGTTGA
CGCATCGAAGTGATCGGGCCGCGGCCGAGAGCTCCGCATTGGCTCAGCTC
GCCCAGATGCTCGAAACCCTCAATAAAAACGAGAACTTCCACCGCGCCCT
CCAAGCCCACGTGGCACATCAACACCACCAACTTCAACAGCTGGGTCTCG
CCCCCTCATCCTCCCCCTCTTCCTCTTCCACATCTCAACCTCCCCCGGCT
GGCATGGGGAATCCAAACCCCGCCGCGGCTCACCTGCACCAGCAATTTTA
CCACCACCACATGCAGCAGCAGCAGCAGCAGATTTCAGGGGCACCGCCAG
GTGTGACGATGGGTCCAGATGGGATGCCCCTCTTCCAAGGCATGCCCATG
GTGCCTGCTTATCAGATCACTTTCGCCTTTCCCCCCCTTAATATCAACCC
TCCTCCTCCTTCCTCTCGCACGCCCACCGGGGCCGGGGCCGGGGCCAAAA
AGAGGAAGGGCACTACCGCTGCCGCTGCCGCTGCTGCTTTTTCACCCAAT
GCATCGACAAGGAAGGGGGGAGGAGGAGGAGGGGGAGGGAGCTTACCTTT
CGCCCGTTGGTTCAGCAAGAAGGGCGATCCGTCCACCCCTTCCTCCTCCC
CTTCCTCCTCCAATACTTACCCCCTCAAACGCACCCGTTCCAATCGAAAA
TCATCCTCCTCCTCCTCCTCCCCCTCCTCCTCCTCCTCCCTTCCCCCTTC
CTTCCCTCCCGACCTCGACACCTCCCCCTCCCCCTCCGAGCAAGATGCCC
TCCTCTCCCTCTTCGAAGACTGCCTCCTCCTCCCCACCAAGGACGCAACC
CTCAAAGCCCGGTGGGACAAGTTGATCGCCGACGACAACGAGCGACACAA
CGCTAAGCGCACCTACTCCCTGCTCAAAAACGCCCTCGTCCTCCACCGGC
TCCTGTGCCCGGACCTTACCCCTTCCAACCCCCTCCTCTATAAGGTCCAA
CTTAAGGCAGGGGCCGAAACCCTGAAGGTTCTCAGCACCGCTATTGAAGT
TGACGTAGGGGGAGGCGGCGGGGGAGGAAAGGCGGGAGGGGGGGTAGTTC
CGCGGGGGGGCTACCCAAGATAG
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Synonyms
Publications