NO08G00390, NO08G00390 (gene) Nannochloropsis oceanica

Overview
NameNO08G00390
Unique NameNO08G00390
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1317
Alignment locationchr8:156285..157601 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:156285..157601 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011050Pectin_lyase_fold/virulence
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO08G00390 vs. NCBI_GenBank
Match: EWM26475.1 (hypothetical protein Naga_100045g21 [Nannochloropsis gaditana])

HSP 1 Score: 364.8 bits (935), Expect = 3.800e-97
Identity = 184/276 (66.67%), Postives = 209/276 (75.72%), Query Frame = 0
Query:  125 AKNSIGDPLQMNEAINKGDLTMAGMNKDKMKG--------------------------------------MDXXXXMGGDSPKAAVDLQQFIGKDTCWPMDIDELQVAVEEGDCPLVILSNPEPDAYMLMEMNEIMVMRHVRILGHPAFLPTIDAMMGMRAFTVMDGGFLELQYVRVRQGMGMYRDRYGLEGREDINSKVLEVKGGGVLLEEGAEGANFVGVIFLAVMTDQGMTERAIQDQLDFTGWRMYGGHVYVTGGTVRFFNCHFWDSMIFMP 363
            AKNS+GDPLQ+  A+  GDLT+ G+ K    G                                        XXXX  G+SP+ A DL +F+GKDTCWP +I ELQ+AVEE DCPLV+L+NP P AYMLM+MNEIMVMRHVR+LGHPA LPTIDAMMGMRAFT+M+GGFLELQYVRVRQGMGMYRDRYGLEGR+DI+SKV E+KGG V+LEEGAEGANFVGVIFLAVMT+Q MTE+AIQDQ+D TGWR+YGGHVYVT GTVRFFNCHFWDSMI MP
Sbjct:  108 AKNSVGDPLQIGNAVENGDLTLEGVKKKSGMGDMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGNSPRNATDLSKFVGKDTCWPRNIVELQIAVEEADCPLVVLTNPNPMAYMLMDMNEIMVMRHVRVLGHPALLPTIDAMMGMRAFTIMEGGFLELQYVRVRQGMGMYRDRYGLEGRDDISSKVFEIKGGSVMLEEGAEGANFVGVIFLAVMTNQEMTEQAIQDQIDMTGWRIYGGHVYVTAGTVRFFNCHFWDSMILMP 383          
BLAST of NO08G00390 vs. NCBI_GenBank
Match: XP_005853964.1 (hypothetical protein NGA_0462000 [Nannochloropsis gaditana CCMP526] >EKU22398.1 hypothetical protein NGA_0462000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 210.7 bits (535), Expect = 9.200e-51
Identity = 110/193 (56.99%), Postives = 137/193 (70.98%), Query Frame = 0
Query:  170 AAVDLQQFIGKDTCWPMDIDELQVAVEEGDCPLVILSNPEPDAYMLMEMNEIMVMRHVRILGHPAFLPTIDAMMGMRAFTVMDGGFLELQYVRVRQGMGMYRDRYGLEGREDINSKVLEVKGGGVLLEEGAEGANFVGVIFLAVMTDQGMTERAIQDQLDFTGWRMYGGHVYVTGGTVRFFNCHFWDSMIFMP 363
            A V+L+ F+G+++CWP D  EL  AVE   C LV+LS+ +PDAY L E  +I V R+VR++G+PA LP IDA    RAFTV  GG LELQ+VRVRQG G  RDRYGLEG    +S V EV+GG V +E GA GANFVGV F+AV  D    + AI+DQ+DF G R+YGGHVYV  GTV FF C+FWD+ + +P
Sbjct:  102 ADVNLKDFVGQNSCWPADGAELLDAVENQGCELVVLSSGDPDAYALDE--DIKVNRYVRVMGNPAVLPQIDAEDAERAFTVGPGGLLELQFVRVRQGGGTVRDRYGLEG-SGSSSVVGEVRGGCVSVEPGALGANFVGVTFIAVANDWDSVQGAIEDQIDFVGGRIYGGHVYVAAGTVNFFGCNFWDTTLLLP 291          
BLAST of NO08G00390 vs. NCBI_GenBank
Match: EWM24109.1 (hypothetical protein Naga_100286g5 [Nannochloropsis gaditana])

HSP 1 Score: 210.7 bits (535), Expect = 9.200e-51
Identity = 110/193 (56.99%), Postives = 137/193 (70.98%), Query Frame = 0
Query:  170 AAVDLQQFIGKDTCWPMDIDELQVAVEEGDCPLVILSNPEPDAYMLMEMNEIMVMRHVRILGHPAFLPTIDAMMGMRAFTVMDGGFLELQYVRVRQGMGMYRDRYGLEGREDINSKVLEVKGGGVLLEEGAEGANFVGVIFLAVMTDQGMTERAIQDQLDFTGWRMYGGHVYVTGGTVRFFNCHFWDSMIFMP 363
            A V+L+ F+G+++CWP D  EL  AVE   C LV+LS+ +PDAY L E  +I V R+VR++G+PA LP IDA    RAFTV  GG LELQ+VRVRQG G  RDRYGLEG    +S V EV+GG V +E GA GANFVGV F+AV  D    + AI+DQ+DF G R+YGGHVYV  GTV FF C+FWD+ + +P
Sbjct:  121 ADVNLKDFVGQNSCWPADGAELLDAVENQGCELVVLSSGDPDAYALDE--DIKVNRYVRVMGNPAVLPQIDAEDAERAFTVGPGGLLELQFVRVRQGGGTVRDRYGLEG-SGSSSVVGEVRGGCVSVEPGALGANFVGVTFIAVANDWDSVQGAIEDQIDFVGGRIYGGHVYVAAGTVNFFGCNFWDTTLLLP 310          
BLAST of NO08G00390 vs. NCBI_GenBank
Match: EWM26075.1 (hypothetical protein Naga_100278g5 [Nannochloropsis gaditana])

HSP 1 Score: 171.8 bits (434), Expect = 4.800e-39
Identity = 91/200 (45.50%), Postives = 124/200 (62.00%), Query Frame = 0
Query:  181 DTCWPMDIDELQVAVEEGDCPLVILSNPEPDAYMLMEMNEIMVMRHVRILGHPAFLPTIDAM---MGMRAFTVMDGGFLELQYVRVRQGMGMYRDR------------YG-LEGRED--INSKVLEVKGGGVLLEEGAEGANFVGVIFLAVMTDQGMTERAIQDQLDFTGWRMYGGHVYVTGGTVRFFNCHFWDSMIFMP 363
            D C+P   DEL  AV+E DC L+ L+N +P AY++ +   IMV R +RI+GHP FLP IDA    M  RAF V++GGFL+LQY+RVR G+G  ++R            +G   G +   +  K+LE +GG V +E+GA GANF GVIFL+V       + AIQ      G R YGGH+++ GG+V+F NCHFW + I +P
Sbjct:    2 DACYPQTADELVEAVQELDCSLLFLTNSDPQAYLITQ--HIMVDRPIRIVGHPVFLPVIDASTLNMAPRAFRVVEGGFLDLQYIRVRAGVGETKERPVSSNQTQAESAFGETSGTQQVGVTGKILETRGGSVAIEQGASGANFEGVIFLSVANSWESVQEAIQATYTGMGGRTYGGHIFIAGGSVKFTNCHFWTTAILLP 199          
BLAST of NO08G00390 vs. NCBI_GenBank
Match: XP_005854372.1 (hypothetical protein NGA_0163600, partial [Nannochloropsis gaditana CCMP526] >EKU21987.1 hypothetical protein NGA_0163600, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 170.6 bits (431), Expect = 1.100e-38
Identity = 91/200 (45.50%), Postives = 124/200 (62.00%), Query Frame = 0
Query:  181 DTCWPMDIDELQVAVEEGDCPLVILSNPEPDAYMLMEMNEIMVMRHVRILGHPAFLPTIDAM---MGMRAFTVMDGGFLELQYVRVRQGMGMYRDR------------YG-LEGRED--INSKVLEVKGGGVLLEEGAEGANFVGVIFLAVMTDQGMTERAIQDQLDFTGWRMYGGHVYVTGGTVRFFNCHFWDSMIFMP 363
            D C+P   DEL  AV+E DC L+ L+N +P AY++ +   IMV R +RI+GHP FLP IDA    M  RAF V++GGFL+LQY+RVR G+G  ++R            +G   G +   +  K+LE +GG V +E+GA GANF GVIFL+V       + AIQ      G R YGGH+++ GG+V+F NCHFW + I +P
Sbjct:  137 DACYPQTADELVEAVQELDCSLLFLTNFDPQAYLITQ--HIMVDRPIRIVGHPVFLPVIDASTLNMAPRAFRVVEGGFLDLQYIRVRAGVGETKERPVSSNQTQAESAFGETSGTQQVGVTGKILETRGGSVAIEQGASGANFEGVIFLSVANSWESVQEAIQATYTGMGGRTYGGHIFIAGGSVKFTNCHFWTTAILLP 334          
BLAST of NO08G00390 vs. NCBI_GenBank
Match: EWM23493.1 (hypothetical protein Naga_100198g12 [Nannochloropsis gaditana])

HSP 1 Score: 114.8 bits (286), Expect = 6.900e-22
Identity = 66/179 (36.87%), Postives = 102/179 (56.98%), Query Frame = 0
Query:  180 KDTCWPMDIDELQVAVEEGDCPLVILSNPEPDAYMLMEMNEIMVMRHVRILGHPAFLPTIDAMMGMRAFTVMDGGFLELQYVRVRQGMGMYRD--RYGLEGREDINSKVLEVKGGGVLLEEGAEGANFVGVIFLAVMTDQGMTERAIQDQLDFTGWRMYGGHVYVTGGTVRFFNCHFWD 357
            +D C   D  EL  A+E   C +V L   +P     +E  EI+V R V ++G+P+ LP ID    +R+F V++GGFL+L++V+     G+ R+   Y +       ++V E++GG V ++EGA G  F GVIF+     +    R+I+  +D   +R+YGGHV++ GG V F  C FWD
Sbjct:  152 EDGCEVNDGLELTDAIENQSCSIVYL---KPGQLYELE-REILVRREVIVMGNPSVLPMIDGEDAIRSFHVLEGGFLDLRFVQQFASDGIVREPKPYEIFATTSPRNRVWEIRGGSVFIDEGALGGKFTGVIFIDDPDVEDAARRSIRRSIDGDVYRIYGGHVFIVGGRVDFVGCLFWD 326          
BLAST of NO08G00390 vs. NCBI_GenBank
Match: XP_005852539.1 (hypothetical protein NGA_0727200 [Nannochloropsis gaditana CCMP526] >EKU23293.1 hypothetical protein NGA_0727200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 113.6 bits (283), Expect = 1.500e-21
Identity = 75/226 (33.19%), Postives = 109/226 (48.23%), Query Frame = 0
Query:  180 KDTCWPMDIDELQVAVEEGDCPLVILSNPEPDAYMLMEMNEIMVMRHVRILGHPAFLPTIDAMMGMRAFTVMDGGFLELQYVRVRQGMGMYRDRYGL------------------------------EGREDINS-------------KVLEVKGGGVLLEEGAEGANFVGVIFLAVMTDQGMTERAIQDQLDFTGWRMYGGHVYVTGGTVRFFNCHFWDSMIFMP 363
            +D C   +  EL+ A+E   C +VIL++ EPDAY+L    EI++ R V ++G+   LP ID    +RAF V+ GGFL+LQ+VR+  G G  R R+GL                              E RE + +             +V++++GG V  E GA G  F G+ F +  TD      AI+   +  G R++GGHV V  G V F  C F+D  +  P
Sbjct:  149 QDACRVANAGELEDAIERKTCAVVILTSSEPDAYVL--EREIVISRAVVVMGNSVMLPFIDCKDIVRAFRVVPGGFLDLQFVRINIGKGFVRPRWGLFRKQKTRRNLRGEEIILDEEEDDWREPRTKEEREMVRNLQLGGQAADAEPGEVIDIRGGSVYFEPGALGGTFNGIYFTSDQTDVEDIMVAIEQTTNLIGIRIWGGHVLVADGDVSFNACVFYDLELLTP 372          
BLAST of NO08G00390 vs. NCBI_GenBank
Match: XP_005854242.1 (hypothetical protein NGA_0025320 [Nannochloropsis gaditana CCMP526] >EKU22122.1 hypothetical protein NGA_0025320 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 98.6 bits (244), Expect = 5.100e-17
Identity = 49/128 (38.28%), Postives = 77/128 (60.16%), Query Frame = 0
Query:  231 GHPAFLPTIDAMMGMRAFTVMDGGFLELQYVRVRQGMGMYRD--RYGLEGREDINSKVLEVKGGGVLLEEGAEGANFVGVIFLAVMTDQGMTERAIQDQLDFTGWRMYGGHVYVTGGTVRFFNCHFWD 357
            G+P+ LP ID    +R+F V++GGFL+L++V+     G+ R+   Y +       ++V E++GG V ++EGA G  F GVIF+     +    R+I+  +D   +R+YGGHV++ GG V F  C FWD
Sbjct:   84 GNPSVLPMIDGEDAIRSFHVLEGGFLDLRFVQQFASDGIVREPKPYEIFATTSPRNRVWEIRGGSVFIDEGALGGKFTGVIFIDDPDVEDAARRSIRRSIDGDVYRIYGGHVFIVGGRVDFVGCLFWD 211          
BLAST of NO08G00390 vs. NCBI_GenBank
Match: XP_005853754.1 (hypothetical protein NGA_0476201 [Nannochloropsis gaditana CCMP526] >EKU22606.1 hypothetical protein NGA_0476201 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 94.0 bits (232), Expect = 1.300e-15
Identity = 63/197 (31.98%), Postives = 98/197 (49.75%), Query Frame = 0
Query:  183 CWPMDIDELQVAV-EEGDCPLVIL------------SNPEPDAYM---LMEMNEIMVMRHVRILGHPAFLPTIDAMMGMRAFTVMDGGFLELQYVRVRQG-MGMYRDRYGLEGREDINSKVLEVKGGGVLLEEGAEGANFVGVIFLAVMTDQGMTERAIQDQLDFTGWRMYGGHVYVTGGTVRFFNCHFWDSMIFMP 363
            C+  D++EL  A+ ++ +C ++ L             N  P A      +  +EI+V + V I G+   LP +D    +R F VMDGG+LEL+YVR+ Q   G+ R    L     +   V E +G  V  E GA G  F+GV F    +D+  T+  ++     T +R+YGG V++ GG ++F  C F+D     P
Sbjct:  173 CFVGDMEELAEALADDSECTVITLVSTSSRDGVSGDGNSIPSAAAQTPFVFRDEILVSKRVIIQGNSVLLPFLDCSQSIRCFRVMDGGYLELRYVRINQSDKGVLRPVNPLYEGFTVTGMVREYRGSSVYFEPGATGGRFLGVYFDDDQSDE--TDWIVEQSFALTSFRIYGGFVFMAGGRLQFELCLFYDFEFVTP 367          
BLAST of NO08G00390 vs. NCBI_GenBank
Match: EWM26817.1 (Pectin lyase fold/virulence factor [Nannochloropsis gaditana])

HSP 1 Score: 77.8 bits (190), Expect = 9.300e-11
Identity = 58/177 (32.77%), Postives = 91/177 (51.41%), Query Frame = 0
Query:  177 FIGKDTCWPMDIDELQVAVEEGDCPLVILSNPEPDAYMLMEMNEIMVMRHVRILGHPAFLPTIDAMMGMRAFTVMDGGFLELQYVRVRQGMGMYRDRYGLEGREDINSKVLEVKGGGVLLEEGAEGANFVGVIFLAVMTDQGMTERAIQDQLDFTGWRMYGGHVYVTGGTVRFFNCH 354
            +I    C P    +L+  VE G CP++ L+   P    +++  EI V R V I+G P  LP IDA +  RAF+V   G L+L++V+V +G+ M            ++   LE++GG   + EG EG  F G + L  + D  + +  +   L  T  R+YGG + +  GT+R  +CH
Sbjct:  182 YIAVHGCTPDTGVQLRSLVETGSCPVITLT---PGVRYVLD-EEIHVRRAVVIIGRPLTLPVIDAHLIARAFSVEAKGRLDLRFVKVWRGVPM----------AVVDEVYLELRGGVAWIREGGEGV-FTGCLML--VHDDEVGDVLLASDLRVTA-RLYGGFLLLEAGTLRVRDCH 340          
The following BLAST results are available for this feature:
BLAST of NO08G00390 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 10
Match NameE-valueIdentityDescription
EWM26475.13.800e-9766.67hypothetical protein Naga_100045g21 [Nannochlorops... [more]
XP_005853964.19.200e-5156.99hypothetical protein NGA_0462000 [Nannochloropsis ... [more]
EWM24109.19.200e-5156.99hypothetical protein Naga_100286g5 [Nannochloropsi... [more]
EWM26075.14.800e-3945.50hypothetical protein Naga_100278g5 [Nannochloropsi... [more]
XP_005854372.11.100e-3845.50hypothetical protein NGA_0163600, partial [Nannoch... [more]
EWM23493.16.900e-2236.87hypothetical protein Naga_100198g12 [Nannochlorops... [more]
XP_005852539.11.500e-2133.19hypothetical protein NGA_0727200 [Nannochloropsis ... [more]
XP_005854242.15.100e-1738.28hypothetical protein NGA_0025320 [Nannochloropsis ... [more]
XP_005853754.11.300e-1531.98hypothetical protein NGA_0476201 [Nannochloropsis ... [more]
EWM26817.19.300e-1132.77Pectin lyase fold/virulence factor [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G00390.1NO08G00390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G00390.1NO08G00390.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G00390 ID=NO08G00390|Name=NO08G00390|organism=Nannochloropsis oceanica|type=gene|length=1317bp
ATGTCTGCAGTACCTGCACCATCCTCGGCCGCACCTGGAAATGGAGGCAG
CCGTCGCATACGACGCTACGTCGTTGGGGGACTCATCTTAGCGGCGGTGA
TGGGCGGTGTCCTTGCCATCATCTTTACGGTTGGAGGCAAGAGTGTTAGC
AAGGGGAGCAGCAGCACCAGCAGCAGTATCACTCCGCCTGTCACCAAGGA
GAGCCCCGGAGATGCACTGATTGACATTCTTGAGAGCATCCAGGACGGTC
CCAAGGATTCGTTGGACGCATCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCTTCCTCCGTGCCCACTACCCCTCTCACGCCTGAGATGGA
GGCAGCACTCCAAGCAGCCATCGCCAAGAACAGCATCGGTGATCCTTTAC
AAATGAATGAGGCCATCAATAAGGGCGATTTGACCATGGCGGGGATGAAC
AAGGATAAGATGAAGGGCATGGACATGGACATGGACATGGGTGGCGACAG
TCCCAAAGCCGCAGTGGATCTGCAGCAGTTCATTGGAAAGGACACATGTT
GGCCTATGGACATTGACGAGCTCCAAGTTGCAGTGGAGGAGGGCGACTGC
CCTCTTGTCATCCTTTCCAACCCCGAACCAGATGCATACATGCTGATGGA
AATGAACGAGATCATGGTCATGCGGCACGTCCGCATTTTGGGCCACCCGG
CCTTTCTCCCCACCATCGATGCAATGATGGGCATGCGCGCCTTTACTGTC
ATGGACGGTGGTTTCCTGGAACTACAGTACGTTAGGGTTCGGCAAGGTAT
GGGGATGTACCGGGATAGATACGGGCTGGAGGGACGGGAAGACATCAACT
CTAAGGTCCTGGAGGTGAAAGGAGGAGGGGTCTTGCTGGAGGAAGGTGCA
GAGGGGGCGAACTTTGTGGGCGTCATTTTCCTAGCGGTTATGACGGACCA
GGGAATGACCGAGAGGGCAATTCAGGACCAACTGGATTTTACCGGGTGGA
GGATGTATGGAGGGCATGTCTATGTGACAGGTGGGACGGTCCGGTTCTTC
AATTGCCACTTCTGGGACTCGATGATTTTCATGCCTTTTACGGATCAAGT
CATGATTGGGGCCGACGTGCTGGTGGTGGCAGGGAATGTATTTATGACGG
GTTGCACGTTTACTAACACCATGCTTTTCTGCAATTACGCTGGTGCGGGG
TGGCACGTGGCGACACTGGGGGGGAATACAGTCTTGACCTGGTGCACGTT
TCAGTGGCAGTCAGTCGCAATGTCCATGGGTGTTGCAGGGATGGTTATCT
TCACGGGGGGGGGGTGA
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protein sequence of NO08G00390.1

>NO08G00390.1-protein ID=NO08G00390.1-protein|Name=NO08G00390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=439bp
MSAVPAPSSAAPGNGGSRRIRRYVVGGLILAAVMGGVLAIIFTVGGKSVS
KGSSSTSSSITPPVTKESPGDALIDILESIQDGPKDSLDASSSSSSSSSS
SSSSSSVPTTPLTPEMEAALQAAIAKNSIGDPLQMNEAINKGDLTMAGMN
KDKMKGMDMDMDMGGDSPKAAVDLQQFIGKDTCWPMDIDELQVAVEEGDC
PLVILSNPEPDAYMLMEMNEIMVMRHVRILGHPAFLPTIDAMMGMRAFTV
MDGGFLELQYVRVRQGMGMYRDRYGLEGREDINSKVLEVKGGGVLLEEGA
EGANFVGVIFLAVMTDQGMTERAIQDQLDFTGWRMYGGHVYVTGGTVRFF
NCHFWDSMIFMPFTDQVMIGADVLVVAGNVFMTGCTFTNTMLFCNYAGAG
WHVATLGGNTVLTWCTFQWQSVAMSMGVAGMVIFTGGG*
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Synonyms
Publications