NO08G00390.1, NO08G00390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G00390.1
Unique NameNO08G00390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1317
Alignment locationchr8:156285..157601 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:156285..157601 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G00390.1 vs.
Match: EWM26475.1 (hypothetical protein Naga_100045g21 [Nannochloropsis gaditana])

HSP 1 Score: 568.9 bits (1465), Expect = 1.300e-158
Identity = 305/477 (63.94%), Postives = 360/477 (75.47%), Query Frame = 0 
Query:    1 MSAVPAPSSAAPGNGGSRRIRRYVVGGLILAAVMGGVLAIIFTVGGKSVSKGSSSTSSSITPPVTKESPGDA-LIDILESIQDGPKDSLDASSSSSSSSSSSSSSSSVPTTPLTPEMEAALQAAIAKNSIGDPLQMNEAINKGDLTM------AGMNKDKMKGMDM-DMDMG-------------------------------GDSPKAAVDLQQFIGKDTCWPMDIDELQVAVEEGDCPLVILSNPEPDAYMLMEMNEIMVMRHVRILGHPAFLPTIDAMMGMRAFTVMDGGFLELQYVRVRQGMGMYRDRYGLEGREDINSKVLEVKGGGVLLEEGAEGANFVGVIFLAVMTDQGMTERAIQDQLDFTGWRMYGGHVYVTGGTVRFFNCHFWDSMIFMPFTDQVMIGADVLVVAGNVFMTGCTFTNTMLFCNYAGAGWHVATLGGNTVLTWCTFQWQSVAMSMGVAGMVIFTGGG 439
            M A  AP    P NGG  R+RRYV+GG +LAAV+GG+LA++FTVG K   + ++  + S+T  +   S GD  L D+L SI+            ++   S SSS SS+  +PLTP++EAALQAAIAKNS+GDPLQ+  A+  GDLT+      +GM    M GMDM DMDMG                               G+SP+ A DL +F+GKDTCWP +I ELQ+AVEE DCPLV+L+NP P AYMLM+MNEIMVMRHVR+LGHPA LPTIDAMMGMRAFT+M+GGFLELQYVRVRQGMGMYRDRYGLEGR+DI+SKV E+KGG V+LEEGAEGANFVGVIFLAVMT+Q MTE+AIQDQ+D TGWR+YGGHVYVT GTVRFFNCHFWDSMI MPFTDQV IGAD+LV+AGNVF+TGCTFTNTMLF NY GAGW++ TLGGNTV+TWCT QWQ++ MSM VAGMV+FTGGG
Sbjct:    1 MVAANAPI-VEPQNGGRNRVRRYVLGGFLLAAVVGGILALVFTVGRKP--EKTTGVAGSVTSSL---SDGDTTLSDVLASIK------------AAGDVSGSSSGSSMNVSPLTPDLEAALQAAIAKNSVGDPLQIGNAVENGDLTLEGVKKKSGMGDMDMGGMDMGDMDMGDMDMGDMDMGDMDMGDMDMGDMDMGDMGMGMGNSPRNATDLSKFVGKDTCWPRNIVELQIAVEEADCPLVVLTNPNPMAYMLMDMNEIMVMRHVRVLGHPALLPTIDAMMGMRAFTIMEGGFLELQYVRVRQGMGMYRDRYGLEGRDDISSKVFEIKGGSVMLEEGAEGANFVGVIFLAVMTNQEMTEQAIQDQIDMTGWRIYGGHVYVTAGTVRFFNCHFWDSMILMPFTDQVAIGADILVLAGNVFVTGCTFTNTMLFSNYGGAGWNIVTLGGNTVMTWCTIQWQAIIMSMFVAGMVVFTGGG 459
The following BLAST results are available for this feature:
BLAST of NO08G00390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26475.11.300e-15863.94hypothetical protein Naga_100045g21 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G00390NO08G00390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G00390.1NO08G00390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G00390.1.cds1NO08G00390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G00390.1 ID=NO08G00390.1|Name=NO08G00390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1317bp
ATGTCTGCAGTACCTGCACCATCCTCGGCCGCACCTGGAAATGGAGGCAG
CCGTCGCATACGACGCTACGTCGTTGGGGGACTCATCTTAGCGGCGGTGA
TGGGCGGTGTCCTTGCCATCATCTTTACGGTTGGAGGCAAGAGTGTTAGC
AAGGGGAGCAGCAGCACCAGCAGCAGTATCACTCCGCCTGTCACCAAGGA
GAGCCCCGGAGATGCACTGATTGACATTCTTGAGAGCATCCAGGACGGTC
CCAAGGATTCGTTGGACGCATCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCTTCCTCCGTGCCCACTACCCCTCTCACGCCTGAGATGGA
GGCAGCACTCCAAGCAGCCATCGCCAAGAACAGCATCGGTGATCCTTTAC
AAATGAATGAGGCCATCAATAAGGGCGATTTGACCATGGCGGGGATGAAC
AAGGATAAGATGAAGGGCATGGACATGGACATGGACATGGGTGGCGACAG
TCCCAAAGCCGCAGTGGATCTGCAGCAGTTCATTGGAAAGGACACATGTT
GGCCTATGGACATTGACGAGCTCCAAGTTGCAGTGGAGGAGGGCGACTGC
CCTCTTGTCATCCTTTCCAACCCCGAACCAGATGCATACATGCTGATGGA
AATGAACGAGATCATGGTCATGCGGCACGTCCGCATTTTGGGCCACCCGG
CCTTTCTCCCCACCATCGATGCAATGATGGGCATGCGCGCCTTTACTGTC
ATGGACGGTGGTTTCCTGGAACTACAGTACGTTAGGGTTCGGCAAGGTAT
GGGGATGTACCGGGATAGATACGGGCTGGAGGGACGGGAAGACATCAACT
CTAAGGTCCTGGAGGTGAAAGGAGGAGGGGTCTTGCTGGAGGAAGGTGCA
GAGGGGGCGAACTTTGTGGGCGTCATTTTCCTAGCGGTTATGACGGACCA
GGGAATGACCGAGAGGGCAATTCAGGACCAACTGGATTTTACCGGGTGGA
GGATGTATGGAGGGCATGTCTATGTGACAGGTGGGACGGTCCGGTTCTTC
AATTGCCACTTCTGGGACTCGATGATTTTCATGCCTTTTACGGATCAAGT
CATGATTGGGGCCGACGTGCTGGTGGTGGCAGGGAATGTATTTATGACGG
GTTGCACGTTTACTAACACCATGCTTTTCTGCAATTACGCTGGTGCGGGG
TGGCACGTGGCGACACTGGGGGGGAATACAGTCTTGACCTGGTGCACGTT
TCAGTGGCAGTCAGTCGCAATGTCCATGGGTGTTGCAGGGATGGTTATCT
TCACGGGGGGGGGGTGA
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protein sequence of NO08G00390.1

>NO08G00390.1-protein ID=NO08G00390.1-protein|Name=NO08G00390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=439bp
MSAVPAPSSAAPGNGGSRRIRRYVVGGLILAAVMGGVLAIIFTVGGKSVS
KGSSSTSSSITPPVTKESPGDALIDILESIQDGPKDSLDASSSSSSSSSS
SSSSSSVPTTPLTPEMEAALQAAIAKNSIGDPLQMNEAINKGDLTMAGMN
KDKMKGMDMDMDMGGDSPKAAVDLQQFIGKDTCWPMDIDELQVAVEEGDC
PLVILSNPEPDAYMLMEMNEIMVMRHVRILGHPAFLPTIDAMMGMRAFTV
MDGGFLELQYVRVRQGMGMYRDRYGLEGREDINSKVLEVKGGGVLLEEGA
EGANFVGVIFLAVMTDQGMTERAIQDQLDFTGWRMYGGHVYVTGGTVRFF
NCHFWDSMIFMPFTDQVMIGADVLVVAGNVFMTGCTFTNTMLFCNYAGAG
WHVATLGGNTVLTWCTFQWQSVAMSMGVAGMVIFTGGG*
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mRNA from alignment at chr8:156285..157601-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G00390.1 ID=NO08G00390.1|Name=NO08G00390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1317bp|location=Sequence derived from alignment at chr8:156285..157601- (Nannochloropsis oceanica)
ATGTCTGCAGTACCTGCACCATCCTCGGCCGCACCTGGAAATGGAGGCAG
CCGTCGCATACGACGCTACGTCGTTGGGGGACTCATCTTAGCGGCGGTGA
TGGGCGGTGTCCTTGCCATCATCTTTACGGTTGGAGGCAAGAGTGTTAGC
AAGGGGAGCAGCAGCACCAGCAGCAGTATCACTCCGCCTGTCACCAAGGA
GAGCCCCGGAGATGCACTGATTGACATTCTTGAGAGCATCCAGGACGGTC
CCAAGGATTCGTTGGACGCATCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCTTCCTCCGTGCCCACTACCCCTCTCACGCCTGAGATGGA
GGCAGCACTCCAAGCAGCCATCGCCAAGAACAGCATCGGTGATCCTTTAC
AAATGAATGAGGCCATCAATAAGGGCGATTTGACCATGGCGGGGATGAAC
AAGGATAAGATGAAGGGCATGGACATGGACATGGACATGGGTGGCGACAG
TCCCAAAGCCGCAGTGGATCTGCAGCAGTTCATTGGAAAGGACACATGTT
GGCCTATGGACATTGACGAGCTCCAAGTTGCAGTGGAGGAGGGCGACTGC
CCTCTTGTCATCCTTTCCAACCCCGAACCAGATGCATACATGCTGATGGA
AATGAACGAGATCATGGTCATGCGGCACGTCCGCATTTTGGGCCACCCGG
CCTTTCTCCCCACCATCGATGCAATGATGGGCATGCGCGCCTTTACTGTC
ATGGACGGTGGTTTCCTGGAACTACAGTACGTTAGGGTTCGGCAAGGTAT
GGGGATGTACCGGGATAGATACGGGCTGGAGGGACGGGAAGACATCAACT
CTAAGGTCCTGGAGGTGAAAGGAGGAGGGGTCTTGCTGGAGGAAGGTGCA
GAGGGGGCGAACTTTGTGGGCGTCATTTTCCTAGCGGTTATGACGGACCA
GGGAATGACCGAGAGGGCAATTCAGGACCAACTGGATTTTACCGGGTGGA
GGATGTATGGAGGGCATGTCTATGTGACAGGTGGGACGGTCCGGTTCTTC
AATTGCCACTTCTGGGACTCGATGATTTTCATGCCTTTTACGGATCAAGT
CATGATTGGGGCCGACGTGCTGGTGGTGGCAGGGAATGTATTTATGACGG
GTTGCACGTTTACTAACACCATGCTTTTCTGCAATTACGCTGGTGCGGGG
TGGCACGTGGCGACACTGGGGGGGAATACAGTCTTGACCTGGTGCACGTT
TCAGTGGCAGTCAGTCGCAATGTCCATGGGTGTTGCAGGGATGGTTATCT
TCACGGGGGGGGGGTGA
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Coding sequence (CDS) from alignment at chr8:156285..157601-

>NO08G00390.1 ID=NO08G00390.1|Name=NO08G00390.1|organism=Nannochloropsis oceanica|type=CDS|length=1317bp|location=Sequence derived from alignment at chr8:156285..157601- (Nannochloropsis oceanica)
ATGTCTGCAGTACCTGCACCATCCTCGGCCGCACCTGGAAATGGAGGCAG
CCGTCGCATACGACGCTACGTCGTTGGGGGACTCATCTTAGCGGCGGTGA
TGGGCGGTGTCCTTGCCATCATCTTTACGGTTGGAGGCAAGAGTGTTAGC
AAGGGGAGCAGCAGCACCAGCAGCAGTATCACTCCGCCTGTCACCAAGGA
GAGCCCCGGAGATGCACTGATTGACATTCTTGAGAGCATCCAGGACGGTC
CCAAGGATTCGTTGGACGCATCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCTTCCTCCGTGCCCACTACCCCTCTCACGCCTGAGATGGA
GGCAGCACTCCAAGCAGCCATCGCCAAGAACAGCATCGGTGATCCTTTAC
AAATGAATGAGGCCATCAATAAGGGCGATTTGACCATGGCGGGGATGAAC
AAGGATAAGATGAAGGGCATGGACATGGACATGGACATGGGTGGCGACAG
TCCCAAAGCCGCAGTGGATCTGCAGCAGTTCATTGGAAAGGACACATGTT
GGCCTATGGACATTGACGAGCTCCAAGTTGCAGTGGAGGAGGGCGACTGC
CCTCTTGTCATCCTTTCCAACCCCGAACCAGATGCATACATGCTGATGGA
AATGAACGAGATCATGGTCATGCGGCACGTCCGCATTTTGGGCCACCCGG
CCTTTCTCCCCACCATCGATGCAATGATGGGCATGCGCGCCTTTACTGTC
ATGGACGGTGGTTTCCTGGAACTACAGTACGTTAGGGTTCGGCAAGGTAT
GGGGATGTACCGGGATAGATACGGGCTGGAGGGACGGGAAGACATCAACT
CTAAGGTCCTGGAGGTGAAAGGAGGAGGGGTCTTGCTGGAGGAAGGTGCA
GAGGGGGCGAACTTTGTGGGCGTCATTTTCCTAGCGGTTATGACGGACCA
GGGAATGACCGAGAGGGCAATTCAGGACCAACTGGATTTTACCGGGTGGA
GGATGTATGGAGGGCATGTCTATGTGACAGGTGGGACGGTCCGGTTCTTC
AATTGCCACTTCTGGGACTCGATGATTTTCATGCCTTTTACGGATCAAGT
CATGATTGGGGCCGACGTGCTGGTGGTGGCAGGGAATGTATTTATGACGG
GTTGCACGTTTACTAACACCATGCTTTTCTGCAATTACGCTGGTGCGGGG
TGGCACGTGGCGACACTGGGGGGGAATACAGTCTTGACCTGGTGCACGTT
TCAGTGGCAGTCAGTCGCAATGTCCATGGGTGTTGCAGGGATGGTTATCT
TCACGGGGGGGGGGTGA
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Synonyms
Publications