NO08G00330, NO08G00330 (gene) Nannochloropsis oceanica

Overview
NameNO08G00330
Unique NameNO08G00330
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1761
Alignment locationchr8:131998..133758 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:131998..133758 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO08G00330 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL107nonsL107Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR138ngnoR138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G00330.1NO08G00330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581876gene_3356Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G00330.1NO08G00330.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G00330 ID=NO08G00330|Name=NO08G00330|organism=Nannochloropsis oceanica|type=gene|length=1761bp
CGGAAAACCTCAAGCTTCCCTCTATTAATGCACCATGAAACGCCTCGGGT
TTGAAATGCCGGAGTTGAACCCACCGTTTCACCAAACGCACGCGTTTTTC
GATGGACTTTGCAACCAGCAAATCGTCGGTCATGTACCCTCTCAAGGGAG
GATAATGTAATAAATATCTACAGAGAGAGTAAATCTTCTTAGAGTGATGT
TCTGCTGCTGCTATCTAGGCGTTGCATTTCCCCGTCTGAGCCAGTTTACC
TTGCTCCTTATACACCCCCTCCACTACAACTACACATCGACAATTCCACT
ACCTACAGGATGCTATCGTCAGCACAGGACGGCAGCGATGAGTACTCCCT
GCTGGAAAAGAATGATGTTATAGGGTCGTCTACGTTCTGCATTTCCGGTT
CATCTTTTTACCACACCAATTCTGAAAGCCTGCAGCACACACCCGATCTC
TGTGCTCCTGTCGAGGCCTCTCCGCTACCTGCGGCTGTCCGTCTACGAAA
TTGCCTACATTCCAGCCTACAAAACCGCTATTTTTGGGCAAATCTTGTCT
ATTTGTTTTACTGTACATGCATGCTCTGCGTCGATTTCGTCGATTACGGC
AAGGAAACTAATGACAAGCTGTACTACTTCTTTGGCATGGTCCACTTCCT
CAACGCGTGGATGTATTGGTACGCCTGGAAAGACGTTCGGTGGCGGGACC
CAATCTTATATCCAGAATATTTAAATGTCGTCGGTGCAGCCCTTTACCTG
TGGTCATCCAGCCTCTACCGCCGCGAGTCCGGCCCGCACGACGCCGCCAC
CTCCCACATTCACGTCATTGAGACCTGTGCGGCGATCGTCGAGTTGCTCG
CCTGCGTCGGATGGGCCTTCACGTGGCATCTGACCTATGAACGCGTCCCA
GGGCGAGGCTATACATTGGATGATCCTGACGTGTGGGCATTGCTGACGAT
ATTTGCTGCAGCCATTACGTATGTAGTGTATAACTTGCAGATCCTGGCGC
ACCCCGATTGGTACAGCGACAATGAGGTGTATTTTTTGGGTGACATTTCC
TATGCGATGAATGGGGTGCTCTATTTATTGGCAGGGCTGAGGGATGACGG
ATGGTTTTGGTGGATGCCCTTAATGGGAAATTTCTACACCTTTGCTCCAT
CTTCCTCTTCCCCTTCATCGATGGGTGTGGAGGCGCAGGAAGAGGAGATG
AAATCTCCCTTGCTGGCTGTGGTGGTTAGAAGAGAGAAAGTGGAAAAGAA
AGAGCGGCAGAATCAAATTTGGAACGCATGGGGCATGCCGCGGAAAAAGA
TTCAAGGGTTCGGGATGATAGAAGAGAGTGGTACCAGAGGAGCAATTGCT
TAAGGGAAGAAGCACGGACATGTCTGTCATTGTCGTTACCGGAATTACAC
CAGAGAAGAAAAACGAGGAAAAATGTAGAGATCTATAATGATTAAGAATG
GGAGAGAGTAGGTATTGATGCATGTATAAGTCATCTCCCAACCCCCGTGG
TGAGGGTGGGTTGGTGAGGAGAAGAAATAGAATTGAGTAATGCATACAAC
GAGCCTTGGAGGCTTTGGTGTGTGAGAGCAAGCACGAGGAGGGCAGCTGC
AATAAGTAGGTAGGGAGATGGAAGAAGAGAAAATGCTGGGAGTAAAACTC
CTTTTGCTTGTTCCTCACGCAGTATGACTCAAATGTGAGTACCAAATGAT
GCATCCGGGCACAGCTTGCGTAAATGAATATAGCAAAGCAATGGATACGA
AGTTAATTTCA
back to top

protein sequence of NO08G00330.1

>NO08G00330.1-protein ID=NO08G00330.1-protein|Name=NO08G00330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=348bp
MLSSAQDGSDEYSLLEKNDVIGSSTFCISGSSFYHTNSESLQHTPDLCAP
VEASPLPAAVRLRNCLHSSLQNRYFWANLVYLFYCTCMLCVDFVDYGKET
NDKLYYFFGMVHFLNAWMYWYAWKDVRWRDPILYPEYLNVVGAALYLWSS
SLYRRESGPHDAATSHIHVIETCAAIVELLACVGWAFTWHLTYERVPGRG
YTLDDPDVWALLTIFAAAITYVVYNLQILAHPDWYSDNEVYFLGDISYAM
NGVLYLLAGLRDDGWFWWMPLMGNFYTFAPSSSSPSSMGVEAQEEEMKSP
LLAVVVRREKVEKKERQNQIWNAWGMPRKKIQGFGMIEESGTRGAIA*
back to top
Synonyms
Publications