NO08G00300, NO08G00300 (gene) Nannochloropsis oceanica

Overview
NameNO08G00300
Unique NameNO08G00300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2464
Alignment locationchr8:117499..119962 +

Link to JBrowse

Properties
Property NameValue
DescriptionVacuolar amino acid transporter 6
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:117499..119962 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013057AA_transpt_TM
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO08G00300 vs. NCBI_GenBank
Match: OAJ01105.1 (hypothetical protein A4X03_g8810 [Tilletia caries])

HSP 1 Score: 102.8 bits (255), Expect = 3.100e-18
Identity = 82/296 (27.70%), Postives = 147/296 (49.66%), Query Frame = 0
Query:   62 SSILILISSVFGSSILAVPFAFSKCGWFLGTICLIFCGLLTQLGAHFLLESAYLVSSSLAPSSSPRCLAFSDIAARATPRLAFLPNVLVVVNCLGSAVASLVVAGDLMPRTFRDLAILSDHSSLIENANGLLDDYLLHRSLWVSLILLLVLPLCFLRSITPLRYAGLVTCIAVSYFIIVVVTLFIFPSAGACLLYSSPPSSSISCAKNVIPFPPSLPVLLHHLLLACPVFFFSFSINFQVLPIHNALRNPSLHTTHLAIATALICSGLTYLLVSLSAYSTFGELVQSNLFKNYGNT 358
            SSI  L ++  G+++L++P A +  G   G   ++ C   + LG + L        +  A     R  +F +IA+R  P  A   +  + + C G ++  L++ G LMP+      ++S   +L  + +  + D+LL RS W+ L+++ +LP CFLR +  LR+   ++ +AV Y +++V+T  + PS  A L    PP        ++I F         HL+   PV+ F+F+    V P+ N L+  +    +  I +++  +GL Y++V    Y+TFG  V  N+   Y +T
Sbjct:   33 SSIANLTNTQIGAAMLSLPHAIASTGLLFGLALVVLCACTSALGLYLL--------TRCADKLGGRRTSFFEIASRTVPGGAKWFDGAIALKCFGVSIGYLIICGQLMPQ-----VVISFTKALHHDIHS-IPDFLLERSTWILLLMIFLLPFCFLRRLDSLRHTSYLSLLAVLYLVVIVLTYALAPSMRATL----PPRKG---EIHLITFD-------SHLISIFPVYVFAFTCAQNVFPVFNELKRNTEKRVNRVIVSSVGTAGLVYMVVGGFGYATFGSAVADNIITMYPST 300          
BLAST of NO08G00300 vs. NCBI_GenBank
Match: OAJ02374.1 (hypothetical protein A4X06_g8570 [Tilletia controversa])

HSP 1 Score: 102.8 bits (255), Expect = 3.100e-18
Identity = 82/296 (27.70%), Postives = 147/296 (49.66%), Query Frame = 0
Query:   62 SSILILISSVFGSSILAVPFAFSKCGWFLGTICLIFCGLLTQLGAHFLLESAYLVSSSLAPSSSPRCLAFSDIAARATPRLAFLPNVLVVVNCLGSAVASLVVAGDLMPRTFRDLAILSDHSSLIENANGLLDDYLLHRSLWVSLILLLVLPLCFLRSITPLRYAGLVTCIAVSYFIIVVVTLFIFPSAGACLLYSSPPSSSISCAKNVIPFPPSLPVLLHHLLLACPVFFFSFSINFQVLPIHNALRNPSLHTTHLAIATALICSGLTYLLVSLSAYSTFGELVQSNLFKNYGNT 358
            SSI  L ++  G+++L++P A +  G   G   ++ C   + LG + L        +  A     R  +F +IA+R  P  A   +  + + C G ++  L++ G LMP+      ++S   +L  + +  + D+LL RS W+ L+++ +LP CFLR +  LR+   ++ +AV Y +++V+T  + PS  A L    PP        ++I F         HL+   PV+ F+F+    V P+ N L+  +    +  I +++  +GL Y++V    Y+TFG  V  N+   Y +T
Sbjct:   33 SSIANLTNTQIGAAMLSLPHAIASTGLLFGLALVVLCACTSALGLYLL--------TRCADKLGGRRTSFFEIASRTVPGGAKWFDGAIALKCFGVSIGYLIICGQLMPQ-----VVISFTKALHHDIHS-IPDFLLERSTWILLLMIFLLPFCFLRRLDSLRHTSYLSLLAVLYLVVIVLTYALAPSMRATL----PPRKG---EIHLITFD-------SHLISIFPVYVFAFTCAQNVFPVFNELKRNTEKRVNRVIVSSVGTAGLVYMVVGGFGYATFGSAVADNIITMYPST 300          
BLAST of NO08G00300 vs. NCBI_GenBank
Match: SJX62615.1 (uncharacterized protein SRS1_10811 [Sporisorium reilianum f. sp. reilianum])

HSP 1 Score: 102.8 bits (255), Expect = 3.100e-18
Identity = 87/301 (28.90%), Postives = 148/301 (49.17%), Query Frame = 0
Query:   57 SGTLGSSILILISSVFGSSILAVPFAFSKCGWFLGTICLIFCGLLTQLGAHFLLESAYLVSSSLAPSSSPRCLAFSDIAARATPRLAFLPNVLVVVNCLGSAVASLVVAGDLMPRTFRDLAILSDHSSLIENANGLLDDYLLHRSLWVSLILLLVLPLCFLRSITPLRYAGLVTCIAVSYFIIVVVTLFIFPSAGACLLYSSPPSSSISCAKNVIPFPPSLPVLLHHLLLACPVFFFSFSINFQVLPIHNALRNPSLHTTHLAIATALICSGLTYLLVSLSAYSTFGELVQSNLFKNYGNT 358
            + +L SSI  L +++ G+ +LA P AF   G  LG   ++FCG    LG + L   A  V          R  +F  IA++A P  A+  ++ + + C G +++ L++ G LMP+      I+S   +   + +  +    L RS W+  +++L++PLCFLR +  LR+   ++ +AV Y +I+V+       A A L    PP   +            L  +  H +   PVF F+F+    +LP++N L + S    + AIA+++   G  YL+V +  Y +FG  V  N+   Y +T
Sbjct:   45 NASLVSSISNLTNTIIGTGMLATPGAFKYTGLLLGPALILFCGFTAALGLYLLTRCAARVGG--------RKNSFFTIASQALPAGAWYFDLAIALKCYGVSISYLIICGQLMPQ-----VIISFFRAFHRDIH-QIPTIFLDRSFWILALIILLIPLCFLRRLDSLRHTSYLSLLAVFYLVIIVLHYSFSSDAKASL----PPQGDV-----------ELVNVSWHTISIFPVFVFAFTCAQNMLPVYNELFHNSETRVNTAIASSIGTGGTVYLIVGVLGYLSFGGNVGDNIIAMYPST 316          
BLAST of NO08G00300 vs. NCBI_GenBank
Match: GAC72040.1 (amino acid transporter protein [Moesziomyces antarcticus T-34])

HSP 1 Score: 102.1 bits (253), Expect = 5.300e-18
Identity = 85/307 (27.69%), Postives = 149/307 (48.53%), Query Frame = 0
Query:   51 TVDAPPSGTLGSSILILISSVFGSSILAVPFAFSKCGWFLGTICLIFCGLLTQLGAHFLLESAYLVSSSLAPSSSPRCLAFSDIAARATPRLAFLPNVLVVVNCLGSAVASLVVAGDLMPRTFRDLAILSDHSSLIENANGLLDDYLLHRSLWVSLILLLVLPLCFLRSITPLRYAGLVTCIAVSYFIIVVVTLFIFPSAGACLLYSSPPSSSISCAKNVIPFPPSLPVLLHHLLLACPVFFFSFSINFQVLPIHNALRNPSLHTTHLAIATALICSGLTYLLVSLSAYSTFGELVQSNLFKNYGNT 358
            +++   S +L SSI  L +++ G+ +LA P AF   G  LG   ++FCG    LG + L   A  V          R  +F  IA++A P  A+  ++ + + C G +++ L++ G LMP+      I+S   +   + +  +    L RS W+  +++L++PLCFLR +  LR+   ++ +AV Y +I+V+       A A L    PP   +            +  +  H +   PVF F+F+    +LP++N L +      + AI +++   G  YL+V +  Y +FG  V  N+   Y +T
Sbjct:   33 SIERQGSASLLSSISNLTNTIIGTGMLATPGAFKYTGLLLGMFLIVFCGCTAALGLYLLTRCAARVGG--------RKNSFFTIASKALPAGAWYFDLAIALKCYGVSISYLIICGQLMPQ-----VIISFFRAFHRDVH-QIPTLFLDRSFWILALIILLIPLCFLRRLDSLRHTSYLSLLAVFYLVIIVLHYSFSSDAKASL----PPKGDV-----------EVVAVSWHTISIFPVFVFAFTCAQNMLPVYNELFHNVEGRVNTAIGSSIGTGGTVYLIVGVLGYLSFGSNVGDNIIAMYPST 310          
BLAST of NO08G00300 vs. NCBI_GenBank
Match: ETS59511.1 (hypothetical protein PaG_06430 [Moesziomyces aphidis DSM 70725])

HSP 1 Score: 102.1 bits (253), Expect = 5.300e-18
Identity = 85/307 (27.69%), Postives = 149/307 (48.53%), Query Frame = 0
Query:   51 TVDAPPSGTLGSSILILISSVFGSSILAVPFAFSKCGWFLGTICLIFCGLLTQLGAHFLLESAYLVSSSLAPSSSPRCLAFSDIAARATPRLAFLPNVLVVVNCLGSAVASLVVAGDLMPRTFRDLAILSDHSSLIENANGLLDDYLLHRSLWVSLILLLVLPLCFLRSITPLRYAGLVTCIAVSYFIIVVVTLFIFPSAGACLLYSSPPSSSISCAKNVIPFPPSLPVLLHHLLLACPVFFFSFSINFQVLPIHNALRNPSLHTTHLAIATALICSGLTYLLVSLSAYSTFGELVQSNLFKNYGNT 358
            +++   S +L SSI  L +++ G+ +LA P AF   G  LG   ++FCG    LG + L   A  V          R  +F  IA++A P  A+  ++ + + C G +++ L++ G LMP+      I+S   +   + +  +    L RS W+  +++L++PLCFLR +  LR+   ++ +AV Y +I+V+       A A L    PP   +            +  +  H +   PVF F+F+    +LP++N L +      + AI +++   G  YL+V +  Y +FG  V  N+   Y +T
Sbjct:   33 SIERQGSASLLSSISNLTNTIIGTGMLATPGAFKYTGLLLGMFLIVFCGCTAALGLYLLTRCAARVGG--------RKNSFFTIASKALPAGAWYFDLAIALKCYGVSISYLIICGQLMPQ-----VIISFFRAFHRDVH-QIPTLFLDRSFWILALIILLIPLCFLRRLDSLRHTSYLSLLAVFYLVIIVLHYSFSSDAKASL----PPKGDV-----------EVVAVSWHTISIFPVFVFAFTCAQNMLPVYNELFHNVEGRVNTAIGSSIGTGGTVYLIVGVLGYLSFGSNVGDNIIAMYPST 310          
BLAST of NO08G00300 vs. NCBI_GenBank
Match: XP_014656445.1 (vacuolar amino acid transporter 5 [Moesziomyces antarcticus] >GAK65241.1 vacuolar amino acid transporter 5 [Moesziomyces antarcticus])

HSP 1 Score: 102.1 bits (253), Expect = 5.300e-18
Identity = 85/307 (27.69%), Postives = 149/307 (48.53%), Query Frame = 0
Query:   51 TVDAPPSGTLGSSILILISSVFGSSILAVPFAFSKCGWFLGTICLIFCGLLTQLGAHFLLESAYLVSSSLAPSSSPRCLAFSDIAARATPRLAFLPNVLVVVNCLGSAVASLVVAGDLMPRTFRDLAILSDHSSLIENANGLLDDYLLHRSLWVSLILLLVLPLCFLRSITPLRYAGLVTCIAVSYFIIVVVTLFIFPSAGACLLYSSPPSSSISCAKNVIPFPPSLPVLLHHLLLACPVFFFSFSINFQVLPIHNALRNPSLHTTHLAIATALICSGLTYLLVSLSAYSTFGELVQSNLFKNYGNT 358
            +++   S +L SSI  L +++ G+ +LA P AF   G  LG   ++FCG    LG + L   A  V          R  +F  IA++A P  A+  ++ + + C G +++ L++ G LMP+      I+S   +   + +  +    L RS W+  +++L++PLCFLR +  LR+   ++ +AV Y +I+V+       A A L    PP   +            +  +  H +   PVF F+F+    +LP++N L +      + AI +++   G  YL+V +  Y +FG  V  N+   Y +T
Sbjct:   33 SIERQGSASLLSSISNLTNTIIGTGMLATPGAFKYTGLLLGMFLIVFCGCTAALGLYLLTRCAARVGG--------RKNSFFTIASKALPAGAWYFDLAIALKCYGVSISYLIICGQLMPQ-----VIISFFRAFHRDVH-QIPTLFLDRSFWILALIILLIPLCFLRRLDSLRHTSYLSLLAVFYLVIIVLHYSFSSDAKASL----PPKGDV-----------EVVAVSWHTISIFPVFVFAFTCAQNMLPVYNELFHNVEGRVNTAIGSSIGTGGTVYLIVGVLGYLSFGSNVGDNIIAMYPST 310          
BLAST of NO08G00300 vs. NCBI_GenBank
Match: CDI53302.1 (conserved hypothetical protein [Melanopsichium pennsylvanicum 4])

HSP 1 Score: 101.7 bits (252), Expect = 6.900e-18
Identity = 83/301 (27.57%), Postives = 140/301 (46.51%), Query Frame = 0
Query:   57 SGTLGSSILILISSVFGSSILAVPFAFSKCGWFLGTICLIFCGLLTQLGAHFLLESAYLVSSSLAPSSSPRCLAFSDIAARATPRLAFLPNVLVVVNCLGSAVASLVVAGDLMPRTFRDLAILSDHSSLIENANGLLDDYLLHRSLWVSLILLLVLPLCFLRSITPLRYAGLVTCIAVSYFIIVVVTLFIFPSAGACLLYSSPPSSSISCAKNVIPFPPSLPVLLHHLLLACPVFFFSFSINFQVLPIHNALRNPSLHTTHLAIATALICSGLTYLLVSLSAYSTFGELVQSNLFKNYGNT 358
            S +L SSI  L +++ G+ +LA P AF   G  LG   + FCG    LG + L   A  V          R  +F  IA++A P  A+  ++ + + C G +++ L++ G LMP+      ++             +    L RS W+  ++  ++PLCFLR +  LR+   ++ +AV Y +I+V+       A A L    PP   +            L  + +H +   PVF F+F+    +LP++N L        + AI +++   G+ YL+V +  Y +FG  V  N+   Y +T
Sbjct:   40 SASLASSISNLTNTIIGTGMLATPGAFKYTGLLLGAFLICFCGFTAALGLYLLTRCAARVGG--------RKNSFFTIASQALPAGAWYFDLAIALKCYGVSISYLIICGQLMPQ------VIISFFRAFHRDPDQIPTLFLDRSFWILALIFFLIPLCFLRRLDSLRHTSYLSLLAVFYLVIIVLHYSFSSDAKASL----PPKGEV-----------ELINVSYHTISIFPVFVFAFTCAQNMLPVYNELFQNVQGRVNTAIGSSIGTGGVVYLIVGVLGYLSFGNNVGDNIIAMYPST 311          
BLAST of NO08G00300 vs. NCBI_GenBank
Match: NP_595211.1 (vacuolar amino acid efflux transporter Avt5 [Schizosaccharomyces pombe] >O74327.1 RecName: Full=Vacuolar amino acid transporter 5 >CAA20055.1 vacuolar amino acid efflux transporter Avt5 [Schizosaccharomyces pombe])

HSP 1 Score: 101.3 bits (251), Expect = 9.000e-18
Identity = 83/296 (28.04%), Postives = 136/296 (45.95%), Query Frame = 0
Query:   62 SSILILISSVFGSSILAVPFAFSKCGWFLGTICLIFCGLLTQLGAHFLLESAYLVSSSLAPSSSPRCLAFSDIAARATPRLAFLPNVLVVVNCLGSAVASLVVAGDLMPRTFRDLAILSDHSSLIENANGLLDDYLLHRSLWVSLILLLVLPLCFLRSITPLRYAGLVTCIAVSYFIIVVVTLFIFPSAGACLLYSSPPSSSISCAKNVIPFPPSLPVLLHHLLLACPVFFFSFSINFQVLPIHNALRNPSLHTTHLAIATALICSGLTYLLVSLSAYSTFGELVQSNLFKNYGNT 358
            SS++ L +++ G+ IL++P AF+K G   G + ++F    + LG +F+ + A  +    A        +F+ +A    P LA + +  + V C G AV+ LV+ GDLMP+              I  + GL     L R  W+   L ++ PL FL+ +  LR+  +++ IA+ Y + +V+  FI        +    P S                      L   PVF F F+ +     + N +RN S    +  + TA+I S L YLLV+++ Y +FG L   N+   Y NT
Sbjct:   23 SSVINLANTILGAGILSLPNAFTKTGLLFGCLTIVFSAFASFLGLYFVSQCAARLPRGKA--------SFAAVAKHTFPSLAVVFDASIAVKCFGVAVSYLVIVGDLMPQ--------------IAPSLGLSSPMFLRRQTWIVFALFVLTPLSFLKRLDSLRHTSVISLIALCYLVFIVLYHFIIGDTVKGEIRYFVPESGFG------------------YLSVLPVFVFGFTCHQNAFSVINEVRNFSQGFVNFTMFTAIISSTLLYLLVAITGYLSFGSLASGNIIAMYDNT 278          
BLAST of NO08G00300 vs. NCBI_GenBank
Match: XP_002552486.1 (KLTH0C06006p [Lachancea thermotolerans CBS 6340] >CAR22048.1 KLTH0C06006p [Lachancea thermotolerans CBS 6340])

HSP 1 Score: 101.3 bits (251), Expect = 9.000e-18
Identity = 90/300 (30.00%), Postives = 150/300 (50.00%), Query Frame = 0
Query:   57 SGTLGSSILILISSVFGSSILAVPFAFSKCGWFLGTICLIFCGLLTQLGAHFLLESAYLVSSSLAPSSSPRCLAFSDIAARATPRLAFLPNVLVVVNCLGSAVASLVVAGDLMPRTFRDLAILSDHSSLIENANGLLDDYLLHRSLWVSLILLLVL-PLCFLRSITPLRYAGLVTCIAVSYFIIVVVTLFIFPSAGACLLYSSPPSSSISCAKNVIPFPPSLPVLLHHLLLAC-PVFFFSFSINFQVLPIHNALRNPSLHTTHLAIATALICSGLTYLLVSLSAYSTFGELVQSNLFKNY 355
            S +LGS +L L+ +  G+ ILA+P+AF   G  LG   + FCG  +  G         ++   ++  ++ R  +F  +A    P+L+ + ++ + V C G  V+ LVV GDLMPR F   A  + H              LL R+L ++L++L V+ PLCF++ +  LRYA +V   +V+Y  ++V+  +++PS     L        +S  K         PV     LL+C P+F F+++ +  +  I N LR+ SL   +     ++  +   YLL+  S Y+TFG+ V  N+   Y
Sbjct:    2 SSSLGSGVLTLLHTACGAGILAMPYAFRPFGVLLGFGMIAFCGACSLAG--------LMIQGRVSKYAAERNASFFALAQVTYPQLSVIFDLAIAVKCFGVGVSYLVVVGDLMPRIF---ATFTSHG------------LLLSRNLHITLVMLFVVSPLCFMKRLDSLRYASMVAISSVAYLCVLVLVHYVWPSDEIREL-----RGHVSLGK---------PVGSFAALLSCFPIFVFAYTCHHNMFSIVNELRDNSLKGIYKVSIISVALAMSLYLLIGGSGYATFGDNVAGNIIMLY 264          
BLAST of NO08G00300 vs. NCBI_GenBank
Match: CUS21516.1 (LAQU0S03e04368g1_1 [Lachancea quebecensis])

HSP 1 Score: 100.9 bits (250), Expect = 1.200e-17
Identity = 89/300 (29.67%), Postives = 149/300 (49.67%), Query Frame = 0
Query:   57 SGTLGSSILILISSVFGSSILAVPFAFSKCGWFLGTICLIFCGLLTQLGAHFLLESAYLVSSSLAPSSSPRCLAFSDIAARATPRLAFLPNVLVVVNCLGSAVASLVVAGDLMPRTFRDLAILSDHSSLIENANGLLDDYLLHRSLWVSLILLLVL-PLCFLRSITPLRYAGLVTCIAVSYFIIVVVTLFIFPSAGACLLYSSPPSSSISCAKNVIPFPPSLPVLLHHLLLAC-PVFFFSFSINFQVLPIHNALRNPSLHTTHLAIATALICSGLTYLLVSLSAYSTFGELVQSNLFKNY 355
            S ++GS +L L+ +  G+ ILA+P+AF   G  LG   + FCG  +  G         ++   ++  ++ R  +F  +A    P+L+ + ++ + V C G  V+ +VV GDLMP  F   A  + H              LL R+L ++L++L V+ PLCF++ +  LRYA +V   +V+Y  ++V+  F +PS     L        +S  K         PV     LL+C P+F F+++ +  +  I N LR+ SL   +    T++  +   YLL+  S Y+TFG+ V  N+   Y
Sbjct:    2 SSSVGSGVLTLLHTACGAGILAMPYAFKPFGILLGCGMIAFCGACSLAG--------LMIQGRVSKYAAERNASFFALAQITYPQLSVIFDLAIAVKCFGVGVSYMVVVGDLMPHIF---ATFTSHG------------LLLSRNLHITLVMLFVVSPLCFMKRLDSLRYASMVAISSVAYLCVLVLVHFAWPSDEIREL-----KGHVSLGK---------PVGSFAALLSCFPIFVFAYTCHHNMFSIVNELRDNSLKGIYKVSVTSVALAMSLYLLIGGSGYATFGDNVAGNIITLY 264          
The following BLAST results are available for this feature:
BLAST of NO08G00300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OAJ01105.13.100e-1827.70hypothetical protein A4X03_g8810 [Tilletia caries][more]
OAJ02374.13.100e-1827.70hypothetical protein A4X06_g8570 [Tilletia controv... [more]
SJX62615.13.100e-1828.90uncharacterized protein SRS1_10811 [Sporisorium re... [more]
GAC72040.15.300e-1827.69amino acid transporter protein [Moesziomyces antar... [more]
ETS59511.15.300e-1827.69hypothetical protein PaG_06430 [Moesziomyces aphid... [more]
XP_014656445.15.300e-1827.69vacuolar amino acid transporter 5 [Moesziomyces an... [more]
CDI53302.16.900e-1827.57conserved hypothetical protein [Melanopsichium pen... [more]
NP_595211.19.000e-1828.04vacuolar amino acid efflux transporter Avt5 [Schiz... [more]
XP_002552486.19.000e-1830.00KLTH0C06006p [Lachancea thermotolerans CBS 6340] >... [more]
CUS21516.11.200e-1729.67LAQU0S03e04368g1_1 [Lachancea quebecensis][more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL107nonsL107Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR142ngnoR142Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR138ngnoR138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009049NSK009049Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G00300.1NO08G00300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|552695gene_3353Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101128g1gene4030Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G00300.1NO08G00300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G00300 ID=NO08G00300|Name=NO08G00300|organism=Nannochloropsis oceanica|type=gene|length=2464bp
CACTTTGTTTTTTATTGAGGTACAGAAATAAATGTGTTGCGTGGGCCTGG
GATTCGTTGTGGATGTGAGAGCGGCCGTACGAATTTACGTGCCCCTTCTT
CCCTTGTGGTGCCTGGTCTTCCATCCCCCCCATTGAGCATGCGCGTGATG
TACGCAGCCTTGTGCCACTACGCTTAAAATCCCTCGTGACGGATAAGTCA
TCGCTAGATTGGTTTCTTCCGGCAGATACACTGCAGCCTCTTCCCATGCC
GCAAGGGCGCCAGGAATAATGAAGAGAAAAAAAAACGAGATCAGCGATCT
CTGCCTGGGCCTATGTCTAGCACTAGCGTACCTGGCTTAGAGAAGACATT
CCAATCTAAAAGTACCTTTATCAGGTGATACATCCACCTACACAGCAGCA
CATGTAACTAAATGAGATAAGCCTGCTTACCCGCAGAAATGCGGCTGTGG
CTTCATAAACGAGGCTTACCACCCCATCGACCGCGTGAGGAGACAGTGCC
CAGACGCCACTGTGCACTGCAATCGACAGCACGCAGGCAATTTATGCCAG
CCCTACAAGTGAACAGAAAACATCGATGTTGAGATGAGGGAGCGCCGCCT
ACTCAACAACTTTGATGACCCGACTTCATGATAGGAATGGCATAAATTCC
CGAATCTATATCGTCACCCCTGCTGCCACACCCTAATTTGGACCACCACA
ACCGACACACACTCACACACAGAAGGAGAACGCTCGCATTTTCTCGAAGC
AGCACATGCCATCATTTACGATCCCGTCCTCACAGTGGCCGGATGACCAC
AGCCAAACTCCCCATGAGCGAGACCAACTACTATCCTCCTCGGATCCATA
TTCCTTGTCCGCATCATCCTCTTTAATTTCCTCCTACGGTGGTACAGCAC
CCAAAACAGTGGACGCTCCTCCGAGTGGCACCCTTGGAAGCAGCATTCTG
ATCCTCATCTCCTCTGTCTTTGGATCCTCCATTCTGGCAGTCCCTTTTGC
ATTCAGCAAGTGCGGCTGGTTTTTGGGCACCATCTGCCTCATCTTCTGTG
GCCTTCTCACGCAACTCGGCGCCCACTTCCTCCTTGAAAGCGCGTACCTT
GTCTCTTCCTCTCTTGCTCCTTCATCCTCCCCACGATGCCTAGCGTTCTC
CGACATTGCTGCCCGCGCCACTCCCCGCCTTGCCTTTCTTCCCAACGTCC
TCGTCGTTGTCAACTGCCTCGGGAGCGCCGTTGCCTCCCTAGTCGTCGCC
GGAGACCTCATGCCCCGGACTTTTCGGGATCTGGCCATCCTCTCCGATCA
TTCCTCCCTGATTGAGAACGCCAATGGCCTCCTGGATGACTACCTCCTCC
ACCGCTCTCTCTGGGTCTCCCTCATCCTCCTCCTCGTCCTCCCCCTGTGC
TTCCTCCGTTCCATTACTCCCCTGCGCTACGCTGGTCTGGTGACTTGCAT
CGCCGTCTCCTACTTTATTATTGTTGTGGTCACCCTCTTCATCTTTCCAT
CCGCCGGGGCCTGCCTCCTGTATTCCTCCCCTCCTTCCTCCTCCATTTCA
TGCGCCAAAAACGTCATCCCCTTCCCCCCCTCCCTCCCTGTCCTCCTCCA
CCACCTCCTCCTCGCCTGTCCTGTCTTCTTCTTCTCCTTTTCCATCAATT
TTCAAGTCCTCCCCATTCATAATGCCCTGCGCAATCCCTCCCTCCACACT
ACCCACCTCGCCATTGCCACCGCCCTTATCTGCAGTGGACTCACGTACCT
CCTCGTCTCCCTCTCTGCTTACTCCACCTTCGGCGAACTAGTGCAATCGA
ATTTATTCAAGAACTACGGGAACACCTGGCCACTGGATACAGCGCGGTTG
CTAATGCTCCTGGTGGTGGCCTTGCTCTATCCCCTCGTTAgtaggtcctt
cgccgtgtccctccctccctccctccctccctccctccttccctccctcc
cttctccttctttttggtccctccctcagaccgtgaacgcctggttccct
gcaatcttactttcacgctttctcctattttattccttctcccactctca
atcctaatccagTTTTCTCTGCCCGTGCTTCCCTCCTCACCCTCCTCCGC
CCCTCCTCCTCCTCCTCCTCCCCCCCGTCCCGGCGGCTCTTCATCCTCCT
CACATGCCTCCTCCTCCTCCTCTCCTTCGGTCTCGCCCTCGCCTTCCAGG
ACCTCAGCGTCATTCTCGGCACCGTCGGAGCGCTGGCCACGGTTCCCATC
TCTCTTACTCTCCCCTCACTCTACTACCTCTCCCTCGCCCTCCCTCCCTC
CCTCCCATCCCAGCAAGCCAAGGAGGGAGACGGGGAAGGAGGGAGGGGAG
GCGAAGGGTGGAGGATAGTGGCAAGACTTGGAGTGGGAATGGGGTTGCTC
ATGTCCATTGTCTTTTTATACGGGACGTACGTGTAGGGAGGACGAGGGGG
CGACGAGGGGAGGG
back to top

protein sequence of NO08G00300.1

>NO08G00300.1-protein ID=NO08G00300.1-protein|Name=NO08G00300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=503bp
MPSFTIPSSQWPDDHSQTPHERDQLLSSSDPYSLSASSSLISSYGGTAPK
TVDAPPSGTLGSSILILISSVFGSSILAVPFAFSKCGWFLGTICLIFCGL
LTQLGAHFLLESAYLVSSSLAPSSSPRCLAFSDIAARATPRLAFLPNVLV
VVNCLGSAVASLVVAGDLMPRTFRDLAILSDHSSLIENANGLLDDYLLHR
SLWVSLILLLVLPLCFLRSITPLRYAGLVTCIAVSYFIIVVVTLFIFPSA
GACLLYSSPPSSSISCAKNVIPFPPSLPVLLHHLLLACPVFFFSFSINFQ
VLPIHNALRNPSLHTTHLAIATALICSGLTYLLVSLSAYSTFGELVQSNL
FKNYGNTWPLDTARLLMLLVVALLYPLVIFSARASLLTLLRPSSSSSSPP
SRRLFILLTCLLLLLSFGLALAFQDLSVILGTVGALATVPISLTLPSLYY
LSLALPPSLPSQQAKEGDGEGGRGGEGWRIVARLGVGMGLLMSIVFLYGT
YV*
back to top
Synonyms
Publications