NO08G00060, NO08G00060 (gene) Nannochloropsis oceanica

Overview
NameNO08G00060
Unique NameNO08G00060
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2984
Alignment locationchr8:22913..25896 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:22913..25896 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO08G00060 vs. NCBI_GenBank
Match: EWM26469.1 (hypothetical protein Naga_100045g13 [Nannochloropsis gaditana])

HSP 1 Score: 204.9 bits (520), Expect = 5.000e-49
Identity = 155/467 (33.19%), Postives = 210/467 (44.97%), Query Frame = 0 
Query:    1 MPPGGENYVGASVSEAGSEREGGAGGRGTSSPTTVNAKGEDKAPDGGSG------------GGREHQNCTQPLQKPSVAVLSLPVHEGFVAWLA-GPDSPYQNDPEAQARAMRVTQDIVRKHTGSFYCRRLGMEMMTLTMKEYRSDMMISLAGTTRKQPTDTADLLAFFRFLGVECPEADATS-------HRRRTAGPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG--------IKKPLSRRIPSLPA---PV-------------------------EGTATGLVYRVMTHEVVRQFMEWLVIERGGLTPPTLRNYARAPGAIMRKLAPSFGEEGLTARGKAELKAYVSEHAQAFYEATRAGTYMDKTSWKYFSLFLQIPLDKNPWVQNDSALLASLTGKTKD-------GGSSKSETALQSQSPGE 405
            MPPGGEN  GA+V E     E G G  G  +       G D + + G G            GG       Q ++     VLS PVH  FV WLA  P+S Y+ D E Q RA+++ + +V++H G  Y RRLGMEMM L+MKEYR DMMI LAG  RK+ TDT D  AF RFL ++   +D           RR    P+                                                                 G         ++ ++ ++ S      PV                         E +A  L+  VMT ++V +F EWLV ER  LTP T+R+Y R PG I+RKLA  FG++  T RGK E +AYV  + +A Y A++ GT+MDK +WKYF+LFL+IPL +N W QNDS L +SL  K +          +++ +  +  Q+PGE
Sbjct:    1 MPPGGENLAGAAVDEGDGSTETGGGQGGNETAFF----GRDPSANVGDGEMLQCQQQDKREGGACQDEKDQKVEAHISYVLSPPVHHAFVDWLANSPESHYRCDVEGQHRALKLVEGVVKRHMGLGYSRRLGMEMMQLSMKEYRGDMMIGLAGRIRKRSTDTGDFRAFLRFLKLDDVFSDQADDGETRPRRRRNLESPSPSLPPFSPSSSSSPTLDGAQGGYPIRSALFPTGRMKEGGKVGGTEGRASLGKQGKGEKKQKEWEKGAGAGDFSAAQREVAEQMASPSRGEDPVRAEYGKALKVGEKDMDKKRKEMEQREISAAKLLLTVMTADLVAEFTEWLVRERPMLTPVTIRSYIRQPGVIIRKLAAVFGDQKYTPRGKEEFRAYVIRNHKALYYASKMGTFMDKAAWKYFALFLEIPLAQNLWAQNDSVLRSSLKEKEESKSTPSAPADTTEDDVEMSHQNPGE 463
The following BLAST results are available for this feature:
BLAST of NO08G00060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26469.15.000e-4933.19hypothetical protein Naga_100045g13 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR142ngnoR142Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G00060.1NO08G00060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G00060.1NO08G00060.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G00060 ID=NO08G00060|Name=NO08G00060|organism=Nannochloropsis oceanica|type=gene|length=2984bp
ATGCCGCCAGGTGGTGAAAACTATGTGGGGGCATCGGTATCCGAGGCGGG
CAGTGAAAGAGAAGGCGGGGCTGGAGGCAGAGGGACCTCCTCCCCTACAA
CGGTTAATGCGAAAGGCGAGGACAAGGCGCCCGATGGCGGCAGCGGAGGA
GGTAGAGAGCATCAAAATTGgtacgtggttgtgtatgggtgtcggatctg
gtatttaaaaaaaaaaaatacatactacggatgtacaaggaaaacatgga
caagaaaacacgatgccgcagtactgaaagccaatacgtctttctacttt
ctgactctctctccacccgcacactatcgtttagCACCCAGCCACTGCAA
AAGCCTTCCGTCGCCGTGTTGTCCTTGCCGGTGCATGAGGGCTTCGTGGC
CTGGCTTGCGGGCCCGGATAGgtagtgtgggaaggaaggagggaaggagg
gagggaaggagggagcgaagcgggaggttgtgagacttgacgtgccacgt
gatccaccctatccggaatttaaagatggcgttcttagtcagcacctgtc
ctcctcgactcttatagattcccgccagaatattcgtttcctcacaccca
ccatccctccctcttccctctccgttcctcgctctcaagTCCGTACCAAA
ACGACCCGGAGGCCCAAGCCCGGGCCATGCGGGTGACGCAAGACATCGTC
AGGAAACACACAGGCAGTTTCTACTGCCGACGACTGGGCATGGAGgtagg
gagagaagggtagagggagacagggagggagagaagaagagggaaaatat
ccaaaacctggctcttggcgaaaccacccctccttcccacctttcctccc
tccctccctctttcccctactcattgatatctgaaggaaactatttcgac
ccttcctccctcccaccttgctttcctaccccccgccctccctctctccc
caaaagATGATGACGCTGACCATGAAGGAGTACCGCAGCGACATGATGAT
CTCCCTGGCCGGGACTACTCGAAAGCAGCCCACCGACACCGCGGACTTGC
TCGCATTTTTCCGgtgcgtccctccctctctccctccctcccttcctttc
tccgtcgcttccaccctcttcctttcacgtgtttgcacctccttaccttc
cctcaacctcccttcttccctttcacgtgctcctgcccacctcgccctcc
ctccctcccttcctccctttcttctttcccttcccatggtctgctcttct
cgccatccctccctcccttctcctttttcacgtgcacgcacctgcttgcc
tcgccctcacctccaatttagATTCCTGGGGGTGGAATGCCCCGAGGCAG
ACGCGACCTCCCACCGCCGACGGACGGCAGGTCCTGCCTCTCCCTCCCCT
TTCCCCCCCCGCCCTCCTGCTCCCCCTTCGTCGACATCAGCTGCAGCGAC
GAGTCAGTCTTGGAAGCCAGAGGGAGGGACAGGAGGAAGGAAGAAGGAGG
TAGGGCCGACCCGGCGGCAGGCGGCAGAGGAAGAGGAAGGAGGGCAGGCG
CAGGAGGGAGAGGAGGAGGCGGAGGAGAAAGAGGGAATAAAGAAGCCGCT
CTCCCGGCGCATTCCATCCCTGCCTGCACCCGTGGAGGGGACGGCGACCG
GCCTGGTCTATCGGGTCATGACGCACGAGGTGGTGCGGCAGTTCATGGAA
TGgtgaggagggaaggagggaaggagggagggaaggagggagggagggaa
gggtgtagttatcatgggcatttgccggttgcgtcgtagttggttcgagg
ccaagtctcggtatcacctcgtccagcctcgttatgttcgtgtctctctg
tggagtccccttcctccctctctccctgcctccctccctcccactcttcc
cctcatgcgggctgatgagggagggcagtcgtcccaccctccacaccttc
ccgcgcactcacttgctcgctcctccctcctccctccctccctcctttcc
tccgtctgtgcacagGCTAGTGATAGAGCGCGGCGGGCTGACCCCACCCA
CCCTCCGCAACTACGCCCGAGCCCCCGGGGCCATCATGCGGAAGCTGGCC
CCGAGCTTTGGGGAGGAGGGgtaagggcgagggaaggcgggtggaaagga
gggagggagagagggaggagggaggctacggatctgatcaatgcttcaca
acacctacattcagATTGACGGCGCGTGGGAAGGCTGAGCTCAAGGCCTA
CGTGAGTGAGCACGCGCAGGCTTTCTATGAGGCGgtaaggagggagggag
ggagggaggaaggaagggacggagggggtgcgtgggcctccaaaatcctc
gtgtgtttacttggaaagagtaagagcggggggcgggggcggggttaatg
gtacaagcacgcaggctcgttcccggtagggagtagtctacttactttct
tttcgtccgacacacagACGCGGGCGGGGACGTACATGGACAAGACCTCC
TGGAAGTACTTCTCCCTCTTCCTTCAGgtaaacctccctcccctccctcc
cctccctcccctccctccttccctccccttctttcctctctcacaccctc
ccaccctccctccctccctccttccctctctctctctccctccctctccc
cctcccgcccggcctccagATCCCCCTGGACAAGAATCCCTGGGTGCAGA
ACGACTCGGCCCTCTTGGCCAGCCTGACCGGCAAGACAAAGGATGGAGGC
AGgtagggcggaagaagggtgggaggggagggaggtaaggcggaaggaaa
ggaaacgaggaggggtaagggttacgtgctcattgaaagcctgccgatcc
atctgcacaacagCAGCAAGTCCGAGACGGCTTTGCAAAGCCAGAGCCCG
GGAGAGGGGAATCACACGAGTAGAGGGGGGAAGAAGGGAGGGGGAGAGGA
AGGAGGGGAGGAAGGGGGGAAGGGATGGAGGTAG
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protein sequence of NO08G00060.1

>NO08G00060.1-protein ID=NO08G00060.1-protein|Name=NO08G00060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=430bp
MPPGGENYVGASVSEAGSEREGGAGGRGTSSPTTVNAKGEDKAPDGGSGG
GREHQNCTQPLQKPSVAVLSLPVHEGFVAWLAGPDSPYQNDPEAQARAMR
VTQDIVRKHTGSFYCRRLGMEMMTLTMKEYRSDMMISLAGTTRKQPTDTA
DLLAFFRFLGVECPEADATSHRRRTAGPASPSPFPPRPPAPPSSTSAAAT
SQSWKPEGGTGGRKKEVGPTRRQAAEEEEGGQAQEGEEEAEEKEGIKKPL
SRRIPSLPAPVEGTATGLVYRVMTHEVVRQFMEWLVIERGGLTPPTLRNY
ARAPGAIMRKLAPSFGEEGLTARGKAELKAYVSEHAQAFYEATRAGTYMD
KTSWKYFSLFLQIPLDKNPWVQNDSALLASLTGKTKDGGSSKSETALQSQ
SPGEGNHTSRGGKKGGGEEGGEEGGKGWR*
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Synonyms
Publications