NO08G00060.1, NO08G00060.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO08G00060.1
Unique Name	NO08G00060.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1290
Alignment location	chr8:22913..25896 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr8	genome	chr8:22913..25896 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO08G00060.1 vs.
Match: EWM26469.1 (hypothetical protein Naga_100045g13 [Nannochloropsis gaditana])

HSP 1 Score: 219.5 bits (558), Expect = 1.900e-53
Identity = 175/473 (37.00%), Postives = 237/473 (50.11%), Query Frame = 0

Query:    1 MPPGGENYVGASVSEAGSEREGGAGGRGTSSPTTVNAKGEDKAPDGGSG------------GGREHQNCTQPLQKPSVAVLSLPVHEGFVAWLAG-PDSPYQNDPEAQARAMRVTQDIVRKHTGSFYCRRLGMEMMTLTMKEYRSDMMISLAGTTRKQPTDTADLLAFFRFLGVE------CPEADATSHRRRTAGPASPS--PFPPRPPAPPSSTSA------------AATSQSWKPEGGTGGRKK---------------------EVGPTRRQAAEEEEGGQAQEGEEEAEEKEGIK---KPLSRRIPSLPAPVEGTATGLVYRVMTHEVVRQFMEWLVIERGGLTPPTLRNYARAPGAIMRKLAPSFGEEGLTARGKAELKAYVSEHAQAFYEATRAGTYMDKTSWKYFSLFLQIPLDKNPWVQNDSALLASLTGKTKDGGSSKSETALQSQSPGEGNHTSRGGKKGG 417
            MPPGGEN  GA+V E     E G G  G  +       G D + + G G            GG       Q ++     VLS PVH  FV WLA  P+S Y+ D E Q RA+++ + +V++H G  Y RRLGMEMM L+MKEYR DMMI LAG  RK+ TDT D  AF RFL ++        + +    RRR     SPS  PF P   + P+   A                +     GGT GR                       +    +R+ AE+       E    AE  + +K   K + ++   +    E +A  L+  VMT ++V +F EWLV ER  LTP T+R+Y R PG I+RKLA  FG++  T RGK E +AYV  + +A Y A++ GT+MDK +WKYF+LFL+IPL +N W QNDS L +SL  K ++  S+ S  A  ++   E +H + G K  G
Sbjct:    1 MPPGGENLAGAAVDEGDGSTETGGGQGGNETAFF----GRDPSANVGDGEMLQCQQQDKREGGACQDEKDQKVEAHISYVLSPPVHHAFVDWLANSPESHYRCDVEGQHRALKLVEGVVKRHMGLGYSRRLGMEMMQLSMKEYRGDMMIGLAGRIRKRSTDTGDFRAFLRFLKLDDVFSDQADDGETRPRRRRNLESPSPSLPPFSPSSSSSPTLDGAQGGYPIRSALFPTGRMKEGGKVGGTEGRASLGKQGKGEKKQKEWEKGAGAGDFSAAQREVAEQMASPSRGEDPVRAEYGKALKVGEKDMDKKRKEMEQR-EISAAKLLLTVMTADLVAEFTEWLVRERPMLTPVTIRSYIRQPGVIIRKLAAVFGDQKYTPRGKEEFRAYVIRNHKALYYASKMGTFMDKAAWKYFALFLEIPLAQNLWAQNDSVLRSSLKEK-EESKSTPSAPADTTEDDVEMSHQNPGEKDQG 467

The following BLAST results are available for this feature:

BLAST of NO08G00060.1 vs.

BLAST of NO08G00060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM26469.1	1.900e-53	37.00	hypothetical protein Naga_100045g13 [Nannochlorops...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO08G00060	NO08G00060	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO08G00060.1	NO08G00060.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO08G00060.1.cds1	NO08G00060.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G00060.1.cds2	NO08G00060.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G00060.1.cds3	NO08G00060.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G00060.1.cds4	NO08G00060.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G00060.1.cds5	NO08G00060.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G00060.1.cds6	NO08G00060.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G00060.1.cds7	NO08G00060.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G00060.1.cds8	NO08G00060.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G00060.1.cds9	NO08G00060.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G00060.1.cds10	NO08G00060.1.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr8:22913..25896-
coding sequence from alignment at chr8:22913..25896-

mRNA sequence

>NO08G00060.1 ID=NO08G00060.1|Name=NO08G00060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1290bp
ATGCCGCCAGGTGGTGAAAACTATGTGGGGGCATCGGTATCCGAGGCGGG
CAGTGAAAGAGAAGGCGGGGCTGGAGGCAGAGGGACCTCCTCCCCTACAA
CGGTTAATGCGAAAGGCGAGGACAAGGCGCCCGATGGCGGCAGCGGAGGA
GGTAGAGAGCATCAAAATTGCACCCAGCCACTGCAAAAGCCTTCCGTCGC
CGTGTTGTCCTTGCCGGTGCATGAGGGCTTCGTGGCCTGGCTTGCGGGCC
CGGATAGTCCGTACCAAAACGACCCGGAGGCCCAAGCCCGGGCCATGCGG
GTGACGCAAGACATCGTCAGGAAACACACAGGCAGTTTCTACTGCCGACG
ACTGGGCATGGAGATGATGACGCTGACCATGAAGGAGTACCGCAGCGACA
TGATGATCTCCCTGGCCGGGACTACTCGAAAGCAGCCCACCGACACCGCG
GACTTGCTCGCATTTTTCCGATTCCTGGGGGTGGAATGCCCCGAGGCAGA
CGCGACCTCCCACCGCCGACGGACGGCAGGTCCTGCCTCTCCCTCCCCTT
TCCCCCCCCGCCCTCCTGCTCCCCCTTCGTCGACATCAGCTGCAGCGACG
AGTCAGTCTTGGAAGCCAGAGGGAGGGACAGGAGGAAGGAAGAAGGAGGT
AGGGCCGACCCGGCGGCAGGCGGCAGAGGAAGAGGAAGGAGGGCAGGCGC
AGGAGGGAGAGGAGGAGGCGGAGGAGAAAGAGGGAATAAAGAAGCCGCTC
TCCCGGCGCATTCCATCCCTGCCTGCACCCGTGGAGGGGACGGCGACCGG
CCTGGTCTATCGGGTCATGACGCACGAGGTGGTGCGGCAGTTCATGGAAT
GGCTAGTGATAGAGCGCGGCGGGCTGACCCCACCCACCCTCCGCAACTAC
GCCCGAGCCCCCGGGGCCATCATGCGGAAGCTGGCCCCGAGCTTTGGGGA
GGAGGGATTGACGGCGCGTGGGAAGGCTGAGCTCAAGGCCTACGTGAGTG
AGCACGCGCAGGCTTTCTATGAGGCGACGCGGGCGGGGACGTACATGGAC
AAGACCTCCTGGAAGTACTTCTCCCTCTTCCTTCAGATCCCCCTGGACAA
GAATCCCTGGGTGCAGAACGACTCGGCCCTCTTGGCCAGCCTGACCGGCA
AGACAAAGGATGGAGGCAGCAGCAAGTCCGAGACGGCTTTGCAAAGCCAG
AGCCCGGGAGAGGGGAATCACACGAGTAGAGGGGGGAAGAAGGGAGGGGG
AGAGGAAGGAGGGGAGGAAGGGGGGAAGGGATGGAGGTAG

protein sequence of NO08G00060.1

>NO08G00060.1-protein ID=NO08G00060.1-protein|Name=NO08G00060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=430bp
MPPGGENYVGASVSEAGSEREGGAGGRGTSSPTTVNAKGEDKAPDGGSGG
GREHQNCTQPLQKPSVAVLSLPVHEGFVAWLAGPDSPYQNDPEAQARAMR
VTQDIVRKHTGSFYCRRLGMEMMTLTMKEYRSDMMISLAGTTRKQPTDTA
DLLAFFRFLGVECPEADATSHRRRTAGPASPSPFPPRPPAPPSSTSAAAT
SQSWKPEGGTGGRKKEVGPTRRQAAEEEEGGQAQEGEEEAEEKEGIKKPL
SRRIPSLPAPVEGTATGLVYRVMTHEVVRQFMEWLVIERGGLTPPTLRNY
ARAPGAIMRKLAPSFGEEGLTARGKAELKAYVSEHAQAFYEATRAGTYMD
KTSWKYFSLFLQIPLDKNPWVQNDSALLASLTGKTKDGGSSKSETALQSQ
SPGEGNHTSRGGKKGGGEEGGEEGGKGWR*

mRNA from alignment at chr8:22913..25896-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO08G00060.1 ID=NO08G00060.1|Name=NO08G00060.1|organism=Nannochloropsis oceanica|type=mRNA|length=2984bp|location=Sequence derived from alignment at chr8:22913..25896- (Nannochloropsis oceanica)
ATGCCGCCAGGTGGTGAAAACTATGTGGGGGCATCGGTATCCGAGGCGGG
CAGTGAAAGAGAAGGCGGGGCTGGAGGCAGAGGGACCTCCTCCCCTACAA
CGGTTAATGCGAAAGGCGAGGACAAGGCGCCCGATGGCGGCAGCGGAGGA
GGTAGAGAGCATCAAAATTGGTACGTGGTTGTGTATGGGTGTCGGATCTG
GTATTTAAAAAAAAAAAATACATACTACGGATGTACAAGGAAAACATGGA
CAAGAAAACACGATGCCGCAGTACTGAAAGCCAATACGTCTTTCTACTTT
CTGACTCTCTCTCCACCCGCACACTATCGTTTAGCACCCAGCCACTGCAA
AAGCCTTCCGTCGCCGTGTTGTCCTTGCCGGTGCATGAGGGCTTCGTGGC
CTGGCTTGCGGGCCCGGATAGGTAGTGTGGGAAGGAAGGAGGGAAGGAGG
GAGGGAAGGAGGGAGCGAAGCGGGAGGTTGTGAGACTTGACGTGCCACGT
GATCCACCCTATCCGGAATTTAAAGATGGCGTTCTTAGTCAGCACCTGTC
CTCCTCGACTCTTATAGATTCCCGCCAGAATATTCGTTTCCTCACACCCA
CCATCCCTCCCTCTTCCCTCTCCGTTCCTCGCTCTCAAGTCCGTACCAAA
ACGACCCGGAGGCCCAAGCCCGGGCCATGCGGGTGACGCAAGACATCGTC
AGGAAACACACAGGCAGTTTCTACTGCCGACGACTGGGCATGGAGGTAGG
GAGAGAAGGGTAGAGGGAGACAGGGAGGGAGAGAAGAAGAGGGAAAATAT
CCAAAACCTGGCTCTTGGCGAAACCACCCCTCCTTCCCACCTTTCCTCCC
TCCCTCCCTCTTTCCCCTACTCATTGATATCTGAAGGAAACTATTTCGAC
CCTTCCTCCCTCCCACCTTGCTTTCCTACCCCCCGCCCTCCCTCTCTCCC
CAAAAGATGATGACGCTGACCATGAAGGAGTACCGCAGCGACATGATGAT
CTCCCTGGCCGGGACTACTCGAAAGCAGCCCACCGACACCGCGGACTTGC
TCGCATTTTTCCGGTGCGTCCCTCCCTCTCTCCCTCCCTCCCTTCCTTTC
TCCGTCGCTTCCACCCTCTTCCTTTCACGTGTTTGCACCTCCTTACCTTC
CCTCAACCTCCCTTCTTCCCTTTCACGTGCTCCTGCCCACCTCGCCCTCC
CTCCCTCCCTTCCTCCCTTTCTTCTTTCCCTTCCCATGGTCTGCTCTTCT
CGCCATCCCTCCCTCCCTTCTCCTTTTTCACGTGCACGCACCTGCTTGCC
TCGCCCTCACCTCCAATTTAGATTCCTGGGGGTGGAATGCCCCGAGGCAG
ACGCGACCTCCCACCGCCGACGGACGGCAGGTCCTGCCTCTCCCTCCCCT
TTCCCCCCCCGCCCTCCTGCTCCCCCTTCGTCGACATCAGCTGCAGCGAC
GAGTCAGTCTTGGAAGCCAGAGGGAGGGACAGGAGGAAGGAAGAAGGAGG
TAGGGCCGACCCGGCGGCAGGCGGCAGAGGAAGAGGAAGGAGGGCAGGCG
CAGGAGGGAGAGGAGGAGGCGGAGGAGAAAGAGGGAATAAAGAAGCCGCT
CTCCCGGCGCATTCCATCCCTGCCTGCACCCGTGGAGGGGACGGCGACCG
GCCTGGTCTATCGGGTCATGACGCACGAGGTGGTGCGGCAGTTCATGGAA
TGGTGAGGAGGGAAGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGAGGGAA
GGGTGTAGTTATCATGGGCATTTGCCGGTTGCGTCGTAGTTGGTTCGAGG
CCAAGTCTCGGTATCACCTCGTCCAGCCTCGTTATGTTCGTGTCTCTCTG
TGGAGTCCCCTTCCTCCCTCTCTCCCTGCCTCCCTCCCTCCCACTCTTCC
CCTCATGCGGGCTGATGAGGGAGGGCAGTCGTCCCACCCTCCACACCTTC
CCGCGCACTCACTTGCTCGCTCCTCCCTCCTCCCTCCCTCCCTCCTTTCC
TCCGTCTGTGCACAGGCTAGTGATAGAGCGCGGCGGGCTGACCCCACCCA
CCCTCCGCAACTACGCCCGAGCCCCCGGGGCCATCATGCGGAAGCTGGCC
CCGAGCTTTGGGGAGGAGGGGTAAGGGCGAGGGAAGGCGGGTGGAAAGGA
GGGAGGGAGAGAGGGAGGAGGGAGGCTACGGATCTGATCAATGCTTCACA
ACACCTACATTCAGATTGACGGCGCGTGGGAAGGCTGAGCTCAAGGCCTA
CGTGAGTGAGCACGCGCAGGCTTTCTATGAGGCGGTAAGGAGGGAGGGAG
GGAGGGAGGAAGGAAGGGACGGAGGGGGTGCGTGGGCCTCCAAAATCCTC
GTGTGTTTACTTGGAAAGAGTAAGAGCGGGGGGCGGGGGCGGGGTTAATG
GTACAAGCACGCAGGCTCGTTCCCGGTAGGGAGTAGTCTACTTACTTTCT
TTTCGTCCGACACACAGACGCGGGCGGGGACGTACATGGACAAGACCTCC
TGGAAGTACTTCTCCCTCTTCCTTCAGGTAAACCTCCCTCCCCTCCCTCC
CCTCCCTCCCCTCCCTCCTTCCCTCCCCTTCTTTCCTCTCTCACACCCTC
CCACCCTCCCTCCCTCCCTCCTTCCCTCTCTCTCTCTCCCTCCCTCTCCC
CCTCCCGCCCGGCCTCCAGATCCCCCTGGACAAGAATCCCTGGGTGCAGA
ACGACTCGGCCCTCTTGGCCAGCCTGACCGGCAAGACAAAGGATGGAGGC
AGGTAGGGCGGAAGAAGGGTGGGAGGGGAGGGAGGTAAGGCGGAAGGAAA
GGAAACGAGGAGGGGTAAGGGTTACGTGCTCATTGAAAGCCTGCCGATCC
ATCTGCACAACAGCAGCAAGTCCGAGACGGCTTTGCAAAGCCAGAGCCCG
GGAGAGGGGAATCACACGAGTAGAGGGGGGAAGAAGGGAGGGGGAGAGGA
AGGAGGGGAGGAAGGGGGGAAGGGATGGAGGTAG

Coding sequence (CDS) from alignment at chr8:22913..25896-

>NO08G00060.1 ID=NO08G00060.1|Name=NO08G00060.1|organism=Nannochloropsis oceanica|type=CDS|length=1290bp|location=Sequence derived from alignment at chr8:22913..25896- (Nannochloropsis oceanica)
ATGCCGCCAGGTGGTGAAAACTATGTGGGGGCATCGGTATCCGAGGCGGG
CAGTGAAAGAGAAGGCGGGGCTGGAGGCAGAGGGACCTCCTCCCCTACAA
CGGTTAATGCGAAAGGCGAGGACAAGGCGCCCGATGGCGGCAGCGGAGGA
GGTAGAGAGCATCAAAATTGCACCCAGCCACTGCAAAAGCCTTCCGTCGC
CGTGTTGTCCTTGCCGGTGCATGAGGGCTTCGTGGCCTGGCTTGCGGGCC
CGGATAGTCCGTACCAAAACGACCCGGAGGCCCAAGCCCGGGCCATGCGG
GTGACGCAAGACATCGTCAGGAAACACACAGGCAGTTTCTACTGCCGACG
ACTGGGCATGGAGATGATGACGCTGACCATGAAGGAGTACCGCAGCGACA
TGATGATCTCCCTGGCCGGGACTACTCGAAAGCAGCCCACCGACACCGCG
GACTTGCTCGCATTTTTCCGATTCCTGGGGGTGGAATGCCCCGAGGCAGA
CGCGACCTCCCACCGCCGACGGACGGCAGGTCCTGCCTCTCCCTCCCCTT
TCCCCCCCCGCCCTCCTGCTCCCCCTTCGTCGACATCAGCTGCAGCGACG
AGTCAGTCTTGGAAGCCAGAGGGAGGGACAGGAGGAAGGAAGAAGGAGGT
AGGGCCGACCCGGCGGCAGGCGGCAGAGGAAGAGGAAGGAGGGCAGGCGC
AGGAGGGAGAGGAGGAGGCGGAGGAGAAAGAGGGAATAAAGAAGCCGCTC
TCCCGGCGCATTCCATCCCTGCCTGCACCCGTGGAGGGGACGGCGACCGG
CCTGGTCTATCGGGTCATGACGCACGAGGTGGTGCGGCAGTTCATGGAAT
GGCTAGTGATAGAGCGCGGCGGGCTGACCCCACCCACCCTCCGCAACTAC
GCCCGAGCCCCCGGGGCCATCATGCGGAAGCTGGCCCCGAGCTTTGGGGA
GGAGGGATTGACGGCGCGTGGGAAGGCTGAGCTCAAGGCCTACGTGAGTG
AGCACGCGCAGGCTTTCTATGAGGCGACGCGGGCGGGGACGTACATGGAC
AAGACCTCCTGGAAGTACTTCTCCCTCTTCCTTCAGATCCCCCTGGACAA
GAATCCCTGGGTGCAGAACGACTCGGCCCTCTTGGCCAGCCTGACCGGCA
AGACAAAGGATGGAGGCAGCAGCAAGTCCGAGACGGCTTTGCAAAGCCAG
AGCCCGGGAGAGGGGAATCACACGAGTAGAGGGGGGAAGAAGGGAGGGGG
AGAGGAAGGAGGGGAGGAAGGGGGGAAGGGATGGAGGTAG

Synonyms

Publications