NO07G04650, NO07G04650 (gene) Nannochloropsis oceanica

Overview
NameNO07G04650
Unique NameNO07G04650
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length675
Alignment locationchr7:1314030..1314704 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1314030..1314704 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO07G04650 vs. NCBI_GenBank
Match: XP_005855614.1 (hypothetical protein NGA_0612700 [Nannochloropsis gaditana CCMP526] >EKU20745.1 hypothetical protein NGA_0612700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 98.2 bits (243), Expect = 3.400e-17
Identity = 73/189 (38.62%), Postives = 103/189 (54.50%), Query Frame = 0 
Query:   10 LEQQHVLARMARRGVNPPDSWTDPHAVALTLAALQQLIETQRQEVEAVKRQ-------------SSDVXXXXXXXXXXXXXXXXXXXXXXXXNMRQGVAELAMSFKAYEREIEKLQAKVLEATREAEALEALAPPLLAQDGTVVDPLQVLEKVRRKAQRVLAERERTMTREEEEEA---ASLRRGEGVS 183
            +EQ+  +AR+AR  ++PPDSWTDPHAVALTLAA+Q L E  +++   +K+Q              SD                          +R+G AEL +  +AYE+E+EK++A + +  REAE LE LAP L  +     DP  +LEK R+K + +L +  R MT+EE EEA   A+  R  GVS
Sbjct:   29 VEQELAIARLARHHISPPDSWTDPHAVALTLAAVQVLTEEAKEKGIKLKKQLPVMFIETQETSKESDFGPARHTSTWTRLPETLATGLPSRV-LRRGAAELNLRLQAYEKELEKVEAHLKKTAREAEVLEKLAPLLTVER----DPGWLLEKARQKVESLLQQHGRIMTQEEAEEANLIAARARRTGVS 212
[Close]
BLAST of NO07G04650 vs. NCBI_GenBank
Match: EWM20653.1 (hypothetical protein Naga_100370g1 [Nannochloropsis gaditana])

HSP 1 Score: 97.8 bits (242), Expect = 4.500e-17
Identity = 70/188 (37.23%), Postives = 101/188 (53.72%), Query Frame = 0 
Query:   10 LEQQHVLARMARRGVNPPDSWTDPHAVALTLAALQQLIETQRQE------------VEAVKRQSSDVXXXXXXXXXXXXXXXXXXXXXXXXNMRQGVAELAMSFKAYEREIEKLQAKVLEATREAEALEALAPPLLAQDGTVVDPLQVLEKVRRKAQRVLAERERTMTREEEEEA---ASLRRGEGVS 183
            +EQ+  +AR+AR  ++PPDSWTDPHAVALTLAA+Q L E  +++            +E  +    +                          +R+G AEL +  +AYE+E+EK++A + +  REAE LE LAP L  +     DP  +LEK R+K + +L +  R MT+EE EEA   A+  R  GVS
Sbjct:   29 VEQELAIARLARHHISPPDSWTDPHAVALTLAAVQVLTEEAKEKGIKLKKQLPVMSIETQETSKENDFGPARHTSTWTRLPETLATGLPSRVLRRGAAELNLRLQAYEKELEKVEAHLKKTAREAEVLEKLAPLLTVER----DPGWLLEKARQKVESLLQQHGRIMTQEEAEEANLIAARARRTGVS 212
The following BLAST results are available for this feature:
BLAST of NO07G04650 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005855614.13.400e-1738.62hypothetical protein NGA_0612700 [Nannochloropsis ... [more]
EWM20653.14.500e-1737.23hypothetical protein Naga_100370g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G04650.1NO07G04650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581706gene_2816Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G04650.1NO07G04650.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G04650 ID=NO07G04650|Name=NO07G04650|organism=Nannochloropsis oceanica|type=gene|length=675bp
ATGCAAGTCCAGCAGCGGGAGCAGTACCTCGAGCAGCAGCACGTCCTGGC
ACGCATGGCACGGCGAGGTGTCAACCCACCAGATTCCTGGACAGACCCCC
ACGCCGTCGCTCTGACCCTGGCCGCTCTTCAGCAGCTCATCGAGACCCAG
CGGCAGGAGGTGGAGGCCGTTAAACGACAGTCGTCAGATGTCGCCCCCGC
CACGCCCTCTAGTAGTAGCAGTAGTAGTAGTAGGACTCTGGTTACGACGA
CACCCACTATGCGCAACATGCGGCAAGGGGTAGCCGAGTTGGCCATGAGC
TTCAAAGCCTACGAGCGAGAGATCGAAAAGCTGCAAGCCAAGGTTCTGGA
AGCCACGCGGGAAGCCGAAGCACTTGAAGCCCTCGCACCGCCCCTACTGG
CTCAGGATGGGACAGTGGTGGACCCGCTGCAGGTGCTGGAAAAGGTAAGA
CGTAAGGCCCAGAGGGTGCTGGCGGAGCGAGAGAGGACTATGACGCGTGA
GGAAGAGGAGGAGGCGGCGTCGTTGCGGAGGGGAGAGGGAGTGTCGGGGC
CCTTGAGTCAAGAGCCTCGGGAAGAGGCGAAACGACTGGTGGCGCGTAAG
TGGATGGGGGCTGCAGGAGGCGGAGAGAGACGGACATCGGGATGTTACCA
ATACACTGAGGAATTGATTGATTGA
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protein sequence of NO07G04650.1

>NO07G04650.1-protein ID=NO07G04650.1-protein|Name=NO07G04650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MQVQQREQYLEQQHVLARMARRGVNPPDSWTDPHAVALTLAALQQLIETQ
RQEVEAVKRQSSDVAPATPSSSSSSSSRTLVTTTPTMRNMRQGVAELAMS
FKAYEREIEKLQAKVLEATREAEALEALAPPLLAQDGTVVDPLQVLEKVR
RKAQRVLAERERTMTREEEEEAASLRRGEGVSGPLSQEPREEAKRLVARK
WMGAAGGGERRTSGCYQYTEELID*
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Synonyms
Publications