NO07G04570, NO07G04570 (gene) Nannochloropsis oceanica

Overview
NameNO07G04570
Unique NameNO07G04570
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3738
Alignment locationchr7:1286144..1289881 +

Link to JBrowse

Properties
Property NameValue
DescriptionRNA polymerase Rpc34
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1286144..1289881 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006383transcription by RNA polymerase III
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005666RNA polymerase III complex
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR036390WH_DNA-bd_sf
IPR016049RNA_pol_Rpc34-like
IPR007832RNA_pol_Rpc34
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Homology
[Close]
BLAST of NO07G04570 vs. NCBI_GenBank
Match: EWM26923.1 (RNA polymerase Rpc34 [Nannochloropsis gaditana])

HSP 1 Score: 400.2 bits (1027), Expect = 6.700e-108
Identity = 201/225 (89.33%), Postives = 214/225 (95.11%), Query Frame = 0 
Query:   60 RDEFLSLCLNHAEGLRDEQLRKHFAERYLQLVPIINSCLAENRIRCMKTERNELVYQAMDPNLAEKMKNLGAEQLLVYQVVEKAGNKGIWHKDIRSQTSLQQPALKKILKNLESRQLIKSTSSISSKTRKLYLLFDLEPAKEITGGPWYTEHEFDHEFIEELSRAIYMFIKQQRKPPSLAAISDYVRTSGVSKVELAAEEVQLIINSLAYDMKIEPVRSGVLGAL 285
            R+EFLSLCL+HAEGLR+EQLR+HF ERYL LVPIINSCLAEN IRCMKTE NELVYQA+DPNLAEKM+NLGAEQLLVYQVVEKAGNKGIWHKDIRSQTSLQQPALKKILKNLESRQL+KSTSSISSKTRKLYLL+DLEPAKEITGGPWYTEHEFDHEFIEELSRAIY FIKQQRKPPSL  I+DYVR SGVSKVELA  EVQLIINSLAYDMKIEPV++ ++GAL
Sbjct:   24 REEFLSLCLSHAEGLRNEQLREHFTERYLHLVPIINSCLAENLIRCMKTESNELVYQAVDPNLAEKMRNLGAEQLLVYQVVEKAGNKGIWHKDIRSQTSLQQPALKKILKNLESRQLVKSTSSISSKTRKLYLLYDLEPAKEITGGPWYTEHEFDHEFIEELSRAIYHFIKQQRKPPSLGIIADYVRNSGVSKVELAPGEVQLIINSLAYDMKIEPVQNSLVGAL 248
[Close]
BLAST of NO07G04570 vs. NCBI_GenBank
Match: XP_005855425.1 (DNA-directed RNA polymerase III subunit RPC6 [Nannochloropsis gaditana CCMP526] >EKU20932.1 DNA-directed RNA polymerase III subunit RPC6 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 393.3 bits (1009), Expect = 8.200e-106
Identity = 201/232 (86.64%), Postives = 214/232 (92.24%), Query Frame = 0 
Query:   60 RDEFLSLCLNHAEGLRDEQLRKHFAERYLQLVPIINSCLAENRIRCMKTERNELVYQAMDPNLAEKMKNLGAEQLLVYQVVEKAGNKGIWHKDIRSQTSLQQPALKKILKNLESRQLIKSTSSISSKTRKLYLLFDLEPAKEITGGPWYTEHEFDHEFIEELSRAIYMFIKQQRKPPSLAAISDYVRTSGVSK-------VELAAEEVQLIINSLAYDMKIEPVRSGVLGAL 285
            R+EFLSLCL+HAEGLR+EQLR+HF ERYL LVPIINSCLAEN IRCMKTE NELVYQA+DPNLAEKM+NLGAEQLLVYQVVEKAGNKGIWHKDIRSQTSLQQPALKKILKNLESRQL+KSTSSISSKTRKLYLL+DLEPAKEITGGPWYTEHEFDHEFIEELSRAIY FIKQQRKPPSL  I+DYVR SGVSK       VELA  EVQLIINSLAYDMKIEPV++ ++GAL
Sbjct:   24 REEFLSLCLSHAEGLRNEQLREHFTERYLHLVPIINSCLAENLIRCMKTESNELVYQAVDPNLAEKMRNLGAEQLLVYQVVEKAGNKGIWHKDIRSQTSLQQPALKKILKNLESRQLVKSTSSISSKTRKLYLLYDLEPAKEITGGPWYTEHEFDHEFIEELSRAIYHFIKQQRKPPSLGIIADYVRNSGVSKVKSEIKNVELAPGEVQLIINSLAYDMKIEPVQNSLVGAL 255
[Close]
BLAST of NO07G04570 vs. NCBI_GenBank
Match: EWM26922.1 (RNA polymerase Rpc34 [Nannochloropsis gaditana] >EWM26924.1 RNA polymerase Rpc34 [Nannochloropsis gaditana])

HSP 1 Score: 357.1 bits (915), Expect = 6.500e-95
Identity = 178/202 (88.12%), Postives = 190/202 (94.06%), Query Frame = 0 
Query:   60 RDEFLSLCLNHAEGLRDEQLRKHFAERYLQLVPIINSCLAENRIRCMKTERNELVYQAMDPNLAEKMKNLGAEQLLVYQVVEKAGNKGIWHKDIRSQTSLQQPALKKILKNLESRQLIKSTSSISSKTRKLYLLFDLEPAKEITGGPWYTEHEFDHEFIEELSRAIYMFIKQQRKPPSLAAISDYVRTSGVSKVELAAEEVQ 262
            R+EFLSLCL+HAEGLR+EQLR+HF ERYL LVPIINSCLAEN IRCMKTE NELVYQA+DPNLAEKM+NLGAEQLLVYQVVEKAGNKGIWHKDIRSQTSLQQPALKKILKNLESRQL+KSTSSISSKTRKLYLL+DLEPAKEITGGPWYTEHEFDHEFIEELSRAIY FIKQQRKPPSL  I+DYVR SGVSKV+   + V+
Sbjct:   24 REEFLSLCLSHAEGLRNEQLREHFTERYLHLVPIINSCLAENLIRCMKTESNELVYQAVDPNLAEKMRNLGAEQLLVYQVVEKAGNKGIWHKDIRSQTSLQQPALKKILKNLESRQLVKSTSSISSKTRKLYLLYDLEPAKEITGGPWYTEHEFDHEFIEELSRAIYHFIKQQRKPPSLGIIADYVRNSGVSKVKSEIKNVE 225
[Close]
BLAST of NO07G04570 vs. NCBI_GenBank
Match: CBN77965.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 251.5 bits (641), Expect = 3.900e-63
Identity = 118/268 (44.03%), Postives = 176/268 (65.67%), Query Frame = 0 
Query:   72 EGLRDEQLRKHFAERYLQLVPIINSCLAENRIRCMKTERNELVYQAMDPNLAEKMKNLGAEQLLVYQVVEKAGNKGIWHKDIRSQTSLQQPALKKILKNLESRQLIKSTSSISSKTRKLYLLFDLEPAKEITGGPWYTEHEFDHEFIEELSRAIYMFIKQQRKPPSLAAISDYVRTSGVSKVELAAEEVQLIINSLAYDMKIEPVRSGVLGALHTPDGGPCYKVSRHVTPLNHFTDFPCGRCPVQAQCEEGGEISPAACRYFNRWLEL 340
            +G+  E L + F E Y  LV +INS L +NR++  K E + + Y+ +    A+K+  L  EQ+++YQV+EKAGNKGIW +DI++ T++ Q  + K LK+LE R L+K+  S++SK++KLY+L++L PAKEITGGPWYT+ EFD+EF++ LS  +  ++K+Q  PP L  I+  ++ SG+SK++L+ EEV+LI+++L YD  +E VR            GP YK++  V  +N FT+ PCG C V   C E G +SP  C Y   WL L
Sbjct:   27 DGVNSEVLSESFGEEYPLLVDVINSLLVDNRLQLSKGENDTMWYKLVQEEKAKKLMGLTPEQMMIYQVIEKAGNKGIWTRDIKTATNVNQNTMTKTLKSLEGRHLVKTAKSVTSKSKKLYMLYELTPAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQETPP-LKDIAAAIKVSGISKIDLSMEEVKLIVSTLVYDGLLEEVRGAASRFNRDAGDGPVYKMAPAVEVVNAFTEVPCGTCKVMKHCSEDGVVSPKTCVYLAEWLNL 293
[Close]
BLAST of NO07G04570 vs. NCBI_GenBank
Match: XP_024579077.1 (dna-directed rna polymerase iii subunit [Plasmopara halstedii] >CEG42708.1 dna-directed rna polymerase iii subunit [Plasmopara halstedii])

HSP 1 Score: 245.0 bits (624), Expect = 3.600e-61
Identity = 133/286 (46.50%), Postives = 181/286 (63.29%), Query Frame = 0 
Query:   62 EFLSLCLNHAEGLRDEQLRKHFAER----YLQLVPIINSCLAENRIRCMKTERNELVYQAMDPNLAEKMKNLGAEQLLVYQVVEKAGNKGIWHKDIRSQTSLQQPALKKILKNLESRQLIKSTSSISSKTRKLYLLFDLEPAKEITGGPWYTEHEFDHEFIEELSRAIYMFIKQQRKPPSLAAISDYVRTSGVSKVELAAEEVQLIINSLAYDMKIEPVRSGVL--GALHTPDGGPCYKVSRHVTPLNHFTDFPCGRCPVQAQCEEGGEISPAACRYFNRWLELKD 342
            +FL L  N+ E + D ++R +F       Y QL  +IN+ L E +I+  K + N L Y  +D   AE+++ L  EQ LV Q +E+AGNKGIW +DI+S T++ Q  + K L+ LE+R L+KS  SISSK +KLY+LFDL P+ EITGGPWY E EFDHEFI+ LS  +Y  IK      +L +I+D V  SG+SKV L  EE+  II +L YD ++E VRS  L  G  H       YK+S+ +T  N+ +D PCG CPV AQC+EG  ISP +C Y  +WL +K+
Sbjct:   15 KFLGLLRNYRESVTDAEVRDYFQTEGGGGYDQLPEVINTLLTEGKIKIFK-KGNVLSYGIVDAEEAERVRGLTLEQRLVLQEIERAGNKGIWTRDIKSNTNIPQQLVTKTLRLLETRHLVKSVKSISSKNKKLYMLFDLVPSTEITGGPWYNEQEFDHEFIDTLSTFVYEVIKASGM-STLHSITDKVHASGISKVALGPEEIYSIIQTLMYDGRVEEVRSVRLTPGTSHETK----YKISQQITTFNYLSDTPCGVCPVFAQCQEGNVISPRSCLYMTKWLGIKE 294
[Close]
BLAST of NO07G04570 vs. NCBI_GenBank
Match: CCI41840.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 243.4 bits (620), Expect = 1.000e-60
Identity = 129/286 (45.10%), Postives = 183/286 (63.99%), Query Frame = 0 
Query:   62 EFLSLCLNHAEGLRDEQLRKHF----AERYLQLVPIINSCLAENRIRCMKTERNELVYQAMDPNLAEKMKNLGAEQLLVYQVVEKAGNKGIWHKDIRSQTSLQQPALKKILKNLESRQLIKSTSSISSKTRKLYLLFDLEPAKEITGGPWYTEHEFDHEFIEELSRAIYMFIKQQRKPPSLAAISDYVRTSGVSKVELAAEEVQLIINSLAYDMKIEPVRSGVLGALHTPDGGPCYKVSRHVTPLNHFTDFPCGRCPVQAQCEEGGEISPAACRYFNRWLELKDGG 344
            +FL+L  NH + + D ++R++F    +  Y +L PIIN+ + E RI+  + +   + Y  +    AE+++ L  EQ ++   +E+AGNKGIW +DI+ Q+++ Q  + K L  LESRQLIKS  SISSK +KLY+LFDL P+ EITGGPWY E EFDH FI  LS  +Y  IK      +L AI+D V  SG+SKV L +EE++ I+ +L YD +IE VRS    +L        YKV++ +T +N+ ++ PCG CPV  QC EG  ISP +C Y  +WL+LKDGG
Sbjct:   22 KFLTLLRNHPDSITDTEVREYFDNEGSGEYEKLPPIINTLMGEGRIKLFQ-KGASISYAIVAQEEAERLRGLTVEQRVILGEIERAGNKGIWTRDIKMQSNIAQQVVVKTLHLLESRQLIKSVKSISSKNKKLYMLFDLVPSTEITGGPWYNEQEFDHVFINTLSTFVYEVIKASGM-STLKAITDKVHASGISKVALGSEEIRSILQTLIYDGRIEQVRS---VSLKPTSNEVNYKVTQQITTMNYLSETPCGVCPVFEQCREGNVISPRSCLYITKWLDLKDGG 302
[Close]
BLAST of NO07G04570 vs. NCBI_GenBank
Match: CCI41841.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 243.4 bits (620), Expect = 1.000e-60
Identity = 129/286 (45.10%), Postives = 183/286 (63.99%), Query Frame = 0 
Query:   62 EFLSLCLNHAEGLRDEQLRKHF----AERYLQLVPIINSCLAENRIRCMKTERNELVYQAMDPNLAEKMKNLGAEQLLVYQVVEKAGNKGIWHKDIRSQTSLQQPALKKILKNLESRQLIKSTSSISSKTRKLYLLFDLEPAKEITGGPWYTEHEFDHEFIEELSRAIYMFIKQQRKPPSLAAISDYVRTSGVSKVELAAEEVQLIINSLAYDMKIEPVRSGVLGALHTPDGGPCYKVSRHVTPLNHFTDFPCGRCPVQAQCEEGGEISPAACRYFNRWLELKDGG 344
            +FL+L  NH + + D ++R++F    +  Y +L PIIN+ + E RI+  + +   + Y  +    AE+++ L  EQ ++   +E+AGNKGIW +DI+ Q+++ Q  + K L  LESRQLIKS  SISSK +KLY+LFDL P+ EITGGPWY E EFDH FI  LS  +Y  IK      +L AI+D V  SG+SKV L +EE++ I+ +L YD +IE VRS    +L        YKV++ +T +N+ ++ PCG CPV  QC EG  ISP +C Y  +WL+LKDGG
Sbjct:    9 KFLTLLRNHPDSITDTEVREYFDNEGSGEYEKLPPIINTLMGEGRIKLFQ-KGASISYAIVAQEEAERLRGLTVEQRVILGEIERAGNKGIWTRDIKMQSNIAQQVVVKTLHLLESRQLIKSVKSISSKNKKLYMLFDLVPSTEITGGPWYNEQEFDHVFINTLSTFVYEVIKASGM-STLKAITDKVHASGISKVALGSEEIRSILQTLIYDGRIEQVRS---VSLKPTSNEVNYKVTQQITTMNYLSETPCGVCPVFEQCREGNVISPRSCLYITKWLDLKDGG 289
[Close]
BLAST of NO07G04570 vs. NCBI_GenBank
Match: XP_009519929.1 (hypothetical protein PHYSODRAFT_554736 [Phytophthora sojae] >EGZ24641.1 hypothetical protein PHYSODRAFT_554736 [Phytophthora sojae])

HSP 1 Score: 242.3 bits (617), Expect = 2.300e-60
Identity = 134/288 (46.53%), Postives = 182/288 (63.19%), Query Frame = 0 
Query:   62 EFLSLCLNHAEGLRDEQLRKHFAER------YLQLVPIINSCLAENRIRCMKTERNELVYQAMDPNLAEKMKNLGAEQLLVYQVVEKAGNKGIWHKDIRSQTSLQQPALKKILKNLESRQLIKSTSSISSKTRKLYLLFDLEPAKEITGGPWYTEHEFDHEFIEELSRAIYMFIKQQRKPPSLAAISDYVRTSGVSKVELAAEEVQLIINSLAYDMKIEPVRSGVL--GALHTPDGGPCYKVSRHVTPLNHFTDFPCGRCPVQAQCEEGGEISPAACRYFNRWLELKD 342
            +FL L  N+ E + D ++R +F         Y QL  +IN+ L E +I+  K + N L Y  +D   AE+++ L  EQ LV Q +E+AGNKGIW +DI+S T++ Q  + K L+ LE+R+L+KS  SISSK +KLY+LFDL P+ EITGGPWY E EFDH FI+ LS  +Y  IK      +L AI+D V  SG+SKV L  EE++ II +L YD ++E VRS  L  GA H       YKVS+ +T  N+ ++ PCG CPV  QC+EG  ISP +C Y  +WL LK+
Sbjct:   17 KFLGLLRNYREPVTDAEVRDYFKSEGGGGGGYEQLPDVINALLGEGKIKIFK-KGNVLSYGIVDAEEAERIRGLTLEQRLVLQEIERAGNKGIWTRDIKSHTNIPQQIVTKTLRLLETRRLVKSVKSISSKNKKLYMLFDLVPSTEITGGPWYNEQEFDHVFIDTLSTFVYEVIKASGM-STLNAITDKVHASGISKVALGPEEIRSIIQTLMYDGRVEEVRSVRLTPGASHEVK----YKVSQQITTFNYLSETPCGVCPVFDQCQEGNVISPRSCLYMTKWLGLKE 298
[Close]
BLAST of NO07G04570 vs. NCBI_GenBank
Match: ETP28846.1 (hypothetical protein F442_21929 [Phytophthora parasitica P10297])

HSP 1 Score: 241.1 bits (614), Expect = 5.200e-60
Identity = 133/286 (46.50%), Postives = 182/286 (63.64%), Query Frame = 0 
Query:   62 EFLSLCLNHAEGLRDEQLRKHFAER----YLQLVPIINSCLAENRIRCMKTERNELVYQAMDPNLAEKMKNLGAEQLLVYQVVEKAGNKGIWHKDIRSQTSLQQPALKKILKNLESRQLIKSTSSISSKTRKLYLLFDLEPAKEITGGPWYTEHEFDHEFIEELSRAIYMFIKQQRKPPSLAAISDYVRTSGVSKVELAAEEVQLIINSLAYDMKIEPVRSGVL--GALHTPDGGPCYKVSRHVTPLNHFTDFPCGRCPVQAQCEEGGEISPAACRYFNRWLELKD 342
            +FL L  N+ E + D ++R +F       Y QL  +IN+ L E +I+  K + + L Y  +D   AE+++ L  EQ LV Q +E+AGNKGIW +DI+S T++ Q  + K L+ LE+R+L+KS  SISSK +KLY+LFDL P+ EITGGPWY E EFDH FI+ LS  +Y  IK      +L AI+D V  SG+SKV L  EE++ II +L YD ++E VRS  L  GA H       YKVS+ +T  N+ ++ PCG CPV  QC+EG  ISP +C Y  +WL LK+
Sbjct:    3 KFLGLLKNYREPVTDAEVRDYFQAEGGGGYEQLPDVINALLTEGKIKIFK-KGSVLSYGIVDAEEAERIRGLTLEQRLVLQEIERAGNKGIWTRDIKSHTNISQQIVTKTLRLLETRRLVKSVKSISSKNKKLYMLFDLVPSTEITGGPWYNEQEFDHVFIDTLSTFVYEVIKASGM-STLNAITDKVHASGISKVALGPEEIRSIIQTLMYDGRVEEVRSVRLTPGASHEVK----YKVSQQITTFNYLSETPCGVCPVFDQCQEGNVISPRSCLYMTKWLGLKE 282
[Close]
BLAST of NO07G04570 vs. NCBI_GenBank
Match: ETI30887.1 (hypothetical protein F443_22065 [Phytophthora parasitica P1569] >ETO59607.1 hypothetical protein F444_22084 [Phytophthora parasitica P1976] >ETP00683.1 hypothetical protein F441_21961 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 240.7 bits (613), Expect = 6.800e-60
Identity = 133/286 (46.50%), Postives = 182/286 (63.64%), Query Frame = 0 
Query:   62 EFLSLCLNHAEGLRDEQLRKHFAER----YLQLVPIINSCLAENRIRCMKTERNELVYQAMDPNLAEKMKNLGAEQLLVYQVVEKAGNKGIWHKDIRSQTSLQQPALKKILKNLESRQLIKSTSSISSKTRKLYLLFDLEPAKEITGGPWYTEHEFDHEFIEELSRAIYMFIKQQRKPPSLAAISDYVRTSGVSKVELAAEEVQLIINSLAYDMKIEPVRSGVL--GALHTPDGGPCYKVSRHVTPLNHFTDFPCGRCPVQAQCEEGGEISPAACRYFNRWLELKD 342
            +FL L  N+ E + D ++R +F       Y QL  +IN+ L E +I+  K + + L Y  +D   AE+++ L  EQ LV Q +E+AGNKGIW +DI+S T++ Q  + K L+ LE+R+L+KS  SISSK +KLY+LFDL P+ EITGGPWY E EFDH FI+ LS  +Y  IK      +L AI+D V  SG+SKV L  EE++ II +L YD ++E VRS  L  GA H       YKVS+ +T  N+ ++ PCG CPV  QC+EG  ISP +C Y  +WL LK+
Sbjct:    3 KFLGLLKNYREPVTDAEVRDYFQAEGGGGYEQLPDVINALLTEGKIKIFK-KGSVLSYGIVDAEEAERIRGLTLEQRLVLQEIERAGNKGIWTRDIKSHTNIPQQIVTKTLRLLETRRLVKSVKSISSKNKKLYMLFDLVPSTEITGGPWYNEQEFDHVFIDTLSTFVYEVIKASGM-STLNAITDKVHASGISKVALGPEEIRSIIQTLMYDGRVEEVRSVRLTPGASHEVK----YKVSQQITTFNYLSETPCGVCPVFDQCQEGNVISPRSCLYMTKWLGLKE 282
The following BLAST results are available for this feature:
BLAST of NO07G04570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26923.16.700e-10889.33RNA polymerase Rpc34 [Nannochloropsis gaditana][more]
XP_005855425.18.200e-10686.64DNA-directed RNA polymerase III subunit RPC6 [Nann... [more]
EWM26922.16.500e-9588.12RNA polymerase Rpc34 [Nannochloropsis gaditana] >E... [more]
CBN77965.13.900e-6344.03conserved unknown protein [Ectocarpus siliculosus][more]
XP_024579077.13.600e-6146.50dna-directed rna polymerase iii subunit [Plasmopar... [more]
CCI41840.11.000e-6045.10unnamed protein product [Albugo candida][more]
CCI41841.11.000e-6045.10unnamed protein product [Albugo candida][more]
XP_009519929.12.300e-6046.53hypothetical protein PHYSODRAFT_554736 [Phytophtho... [more]
ETP28846.15.200e-6046.50hypothetical protein F442_21929 [Phytophthora para... [more]
ETI30887.16.800e-6046.50hypothetical protein F443_22065 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL104nonsL104Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G04570.1NO07G04570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|340733gene_2805Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100284g5gene3621Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G04570.1NO07G04570.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G04570 ID=NO07G04570|Name=NO07G04570|organism=Nannochloropsis oceanica|type=gene|length=3738bp
ATGTCGAGCAATGCCATTGAAAATCAAGgtgaagaggcaaaagttgacaa
cggctcttttcgacctcccctactccctcatatacaccatcaaacagata
tcaagacccatcatcaccacgcgacgcctcacatacatttcgtgcatgca
tatacccccacagGCGTAGGGGAAGCTATCAGCACCAAAGCTGGGGGCAG
CAGCACCAGTAGCAGCAGCATCACCACCAGAGCAATGGCAACGACGGGAG
GAGGGTCTACGGCAGGAGGAGGAGGAGGAGGCGGCGGAGGGGGAGAGGGT
GTGATCCTGCTGAGAGACGAGTTTTTATCGTTATGCCTTAACCATGCCGA
Ggtaagcaggcggaggtagggaggggtagggtgtgtgtgcgcttgtttct
acagcttggctctagcgttcaccccccttcctgtccctccctccttccca
atctcatgtgctccactacccaccagGGACTGCGCGACGAGCAACTACGA
AAACATTTTGCTGAGCGATACTTGCAGCTGGTGCCGATCATTAACAGTTG
TCTTGCCGAGgtaaggaggcaggaggaaagaagataagggatagggatgg
tggtgaggtaggcaggagaggtagagcttgcatggtgttgaagggcttcc
cagtcaagttcgaaggagttgcaaaaagaggtaaacggccctcctcatac
actcaaacccactcgtttggctttctctcccccccccccccaagAACCGC
ATCCGCTGCATGAAGACAGAGCGGAACGAATTGGTCTACCAAGCCATGGA
CCCCAACCTGGCCGAGAAGATGAAAAACCTGGGgtaagcggatcccggag
ggtgggaaggagggcaaaagcaagatcctagcgtcttcctcgacggtcat
gtcactggcttgttgtctcaccgtccgcccgcccctcatttcctccctct
cttccttcccctccccccttcatccttcgtctccattccttagCGCGGAG
CAGCTGTTGGTGTATCAGGTGGTGGAAAAGGCGGGCAACAAGGGGATCTG
GCACAAAGACATCCGGTCCCAGACGTCGTTACAACAGCCGgtgagaaaga
caggcagggaggcagggagggaggaggcagggagagagggagggagggtg
agggtgagagggtaggggagtgtagttaggcaggtgggcaaagatggcat
catttctattttttcttttcccgtacatttatcccgctatctccaatgtt
ttctctttccctccctctcttccttcctccctcctcgccacagGCCCTGA
AGAAGATTCTGAAGAATTTGGAGTCGCGGCAGCTGATCAAGAGCACCTCG
TCCATCAGCAGCAAGACTCGGAAGCTCTACCTCCTCTTCGACCTCGAACC
CGCCAAGGAAATCACCGGCGGGCCATGgtatgcagacagacagacagaca
gacagacagacagacagacagggagggagggagggtgtgattttggccgt
gagcaataggaaacacacaatcctctcacttctcacgttttcctctccct
ccctccctccctccctccctccctcgctccctccctccctccagGTACAC
GGAGCACGAGTTTGACCACGAGTTTATCGAGGAGCTCTCTCGGGCTATCT
ACATGTTCATCAAGCAGCAGCGCAAGCCCCCCTCCCTCGCAGCCATTAGT
GACTACGTCCGCACATCCGGGGTCTCGAAGgtagggaggcagggaggcag
gaagggagggatggagggagggagggcgggcggtcaggagggagggtgta
tgtgcggagcatcgatgctttttgttcttaccctccctccctcccttcct
gccccgacctgacagGTGGAGCTCGCCGCAGAGGAAGTGCAGCTGATCAT
TAACAGCCTGGCCTACGACATGAAAATAGAGCCCGTCCGCAGCGGCGTTT
TGGGTGCCCTCCACgtacgtgtctcttcgccgtcttttcctcccttcctc
cctcccccattcggcgtcgtcttcgccttctccgtttcctctccagtcct
cctccttctctccctccccctctctcggtgcctaccatcctccccacaca
ttctttctttcccccttcccccccctcccttacagACCCCCGACGGCGGC
CCCTGCTATAAGGTCTCACGGCACGTGACGCCCTTGAATCACTTCACCGA
CTTTCCCTGTGGCCGATGCCCTGTCCAAGCGCAGTGTGAGGAGGGCGGAG
AGATCTCGCCCGCGGCTTGTCGGTATTTCAATCGCTGGCTTGAGCTCAAG
GACGGAGGGGGAGTGGGAGGAGGCACCGTGGGAGGAGGGATGATAGAATT
TTGATACATTAGGATATACATAAGAAGTGAAAAAAAGAATTTAGACAAAA
TGTGAAGAAGGAGTAGAAGGGGGACAAGCAATGATTTAAAATTTGGATCG
TCGAGTTTGATTTGATCATTTCCTTGGGTTCTTGGACTTTGTATATCACT
CCATTACTACATCACCTTATCACAACCAAACACGATACACCACCACCTCA
CTACATCAATATATATTTCTATGCCCATGTATCAAGATATCAATACCTTA
CTAGATCAGTATTTGAGTTGACTGACTTCAATATCTTACAAGATTAACAT
CTTGCTAATATCTCGCGTTTTCAATTTGTTTTAAGATCCATGCCAATGTT
GGTACCTTATCTCGTTTGTGTGCCATCACTCCCTCTCCCTCTCACCTTCC
CTCCCTCCCAAACGGACTCGCCCACACACCTCTACCACCACCCCCTCTCA
CTTCATCGTACTTCTTTCCAATGTTAATCCTGTCGTCATTCTTCCTGGAT
CTGGCAGTAAGCGAGGCTCGCCTCCCCCTCAGTCAGTAAATACACTCGCA
CATGCAGTGCCTTGGCCTCCTCCAAAGGGTGGGGGAAAGCGCCCGGCACC
ACCACACACGCCTTCACCGCCCCATCCTCCTCCTCTTCCTCCTCCTCCAG
CTTCCCTTCCCTTCCCCTCCCTCCCTCCTTCCCTACGGTAGGATCAGAAG
AAAAAGAAGAAGAGCGCGAAAAGTCAATCAAGCCTTCGTCATCCCTCAAC
GGCTTCCTCAATTTCTTCTCTTTCATGGACATTTCCTCGCACATTTGTAA
TATCCTCGATTCAATATCGGGATAAGGCTGTGTGATCCGCGCAAAGGAAA
GGCTGCGCTGGATGATCTCGCGTTGGGACTGGTTGGAGAGGGACAGAGAC
AGAGGGAAGGATGCTAAGGGATCACATGAATCACCCACAATTTGACGGAA
AGGGGGAATAAAAACCGCCCCTCCCTCGCTTCCTCGCTCCCTCCCTCGCT
CCCTCTCTCCCTCCTTCCCTCGCTCCCTACCTTGTGTCGCTTCTCCTTGA
CGAAGCAGTACCCGGACTTCCTCCCCTTCTCCCTCACCATGATGTCCAGC
AGGCGCCGATACTGGACTGCGGCCACTGGCTGCTCGTTCCGAAGGACCAA
GCCGCCGCTGGTGACCCGCTTCTCCATTCGAAAACGCGTCGGGCGGGCAG
GCAAAGGCAAGGGGGTAGGAATGGAGGAGGAAAGGGAGGACGAGGCAGGG
CCCCCACCCGTCGCTTCCTTGAGACCTGGCTCGAACTCCTCCTCCTCGCC
CCCGCGGCCCGTGCTATTTCTTCTTTCTTCCTCCCCCCTTCCCTCCGTTC
CTACCCTCTCCTTGCTTCTTCCCCTCCTCCCTCCCCAT
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protein sequence of NO07G04570.1

>NO07G04570.1-protein ID=NO07G04570.1-protein|Name=NO07G04570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MSSNAIENQGVGEAISTKAGGSSTSSSSITTRAMATTGGGSTAGGGGGGG
GGGEGVILLRDEFLSLCLNHAEGLRDEQLRKHFAERYLQLVPIINSCLAE
NRIRCMKTERNELVYQAMDPNLAEKMKNLGAEQLLVYQVVEKAGNKGIWH
KDIRSQTSLQQPALKKILKNLESRQLIKSTSSISSKTRKLYLLFDLEPAK
EITGGPWYTEHEFDHEFIEELSRAIYMFIKQQRKPPSLAAISDYVRTSGV
SKVELAAEEVQLIINSLAYDMKIEPVRSGVLGALHTPDGGPCYKVSRHVT
PLNHFTDFPCGRCPVQAQCEEGGEISPAACRYFNRWLELKDGGGVGGGTV
GGGMIEF*
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Synonyms
Publications