NO07G04350, NO07G04350 (gene) Nannochloropsis oceanica

Overview
NameNO07G04350
Unique NameNO07G04350
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length811
Alignment locationchr7:1214761..1215571 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1214761..1215571 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO07G04350 vs. NCBI_GenBank
Match: EWM20054.1 (hypothetical protein Naga_102018g1 [Nannochloropsis gaditana])

HSP 1 Score: 223.0 bits (567), Expect = 8.200e-55
Identity = 175/200 (87.50%), Postives = 176/200 (88.00%), Query Frame = 0 
Query:   11 NHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTVHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEMATEIKYVQSKAA-----------AEIAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREVQLAYTQDYEPYQAALVDKRKKRGGTGGLEEKEEEN 200
            NHDHQGD MLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSST HTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQ    TEIKYVQSKAA                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREVQLA+TQDYEPYQAALVDKRKKRGGT G EEKEEEN
Sbjct:   72 NHDHQGDKMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQ----TEIKYVQSKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREVQLAFTQDYEPYQAALVDKRKKRGGTSGSEEKEEEN 267
[Close]
BLAST of NO07G04350 vs. NCBI_GenBank
Match: EWM20166.1 (hypothetical protein Naga_101373g3 [Nannochloropsis gaditana])

HSP 1 Score: 201.4 bits (511), Expect = 2.600e-48
Identity = 167/223 (74.89%), Postives = 172/223 (77.13%), Query Frame = 0 
Query:   11 NHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTVHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEMATEIKYVQSKAA----------------------------------AEIAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREVQLAYTQDYEPYQAALVDKRKKRGGTGGLEEKEEEN 200
            NHDHQGD MLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSST HTGPGTSSGEELGKKWAT FQGIGAV+GVAGATAVVVRTFDQ    TEIKYVQSKAA                                    +++XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      +TQDYEPYQAALVDKRKKRGGT G EEKEEEN
Sbjct:   82 NHDHQGDKMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATFFQGIGAVVGVAGATAVVVRTFDQ----TEIKYVQSKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDKRTMSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTQDYEPYQAALVDKRKKRGGTSGSEEKEEEN 300
[Close]
BLAST of NO07G04350 vs. NCBI_GenBank
Match: EWM20082.1 (hypothetical protein Naga_101888g1 [Nannochloropsis gaditana])

HSP 1 Score: 186.8 bits (473), Expect = 6.500e-44
Identity = 143/196 (72.96%), Postives = 145/196 (73.98%), Query Frame = 0 
Query:   22 RFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTVHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEMATEIKYVQSKAAAEIAQ------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREVQLAYTQDYEPYQAALVDKRKKRGGTGGLEEKEEEN 200
            RF     +  RRG       KGRVLRGGFSST HTGPGTSSGEELGKKWAT FQGIGAVLGVAGATAVVVRTFDQTEMATEIKYVQSKAAAEIAQ                  XXXXXXXXXXXXXXXXXXXXXXXXXXXX                 REVQLAYTQDYEPYQAAL+DKRKKRGGTGGLEEKEEEN
Sbjct:   50 RFATNLWSSMRRGR------KGRVLRGGFSSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATAVVVRTFDQTEMATEIKYVQSKAAAEIAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRTMSEVFWKAEVERFKREVQLAYTQDYEPYQAALMDKRKKRGGTGGLEEKEEEN 239
[Close]
BLAST of NO07G04350 vs. NCBI_GenBank
Match: EWM20146.1 (hypothetical protein Naga_101508g1 [Nannochloropsis gaditana])

HSP 1 Score: 177.6 bits (449), Expect = 3.900e-41
Identity = 128/159 (80.50%), Postives = 131/159 (82.39%), Query Frame = 0 
Query:   41 GKGRVLRGGFSSTVHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEMATEIKYVQSKAAAEIAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREVQLAYTQDYEPYQAALVDKRKKRGGTGGLEEKEEEN 200
            GKGRVLRGGF ST HTGPGTSSGEELGKKWAT FQGIGAVLGVAGATAVVVRTFDQ    TEIKY++SKAAAEIAQ       XXXXXXXXXXXXXXXXXXXXXXXX              REVQLAYTQDYEPYQAAL+DKRKKRGGTGGLEEKEEEN
Sbjct:    7 GKGRVLRGGFYSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATAVVVRTFDQ----TEIKYIESKAAAEIAQ-------XXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAYTQDYEPYQAALMDKRKKRGGTGGLEEKEEEN 154
[Close]
BLAST of NO07G04350 vs. NCBI_GenBank
Match: EWM19988.1 (hypothetical protein Naga_102432g1 [Nannochloropsis gaditana])

HSP 1 Score: 167.5 bits (423), Expect = 4.100e-38
Identity = 142/159 (89.31%), Postives = 146/159 (91.82%), Query Frame = 0 
Query:   41 GKGRVLRGGFSSTVHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEMATEIKYVQSKAAAEIAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREVQLAYTQDYEPYQAALVDKRKKRGGTGGLEEKEEEN 200
            GKGRVLRGGFSST HTGPGTSSGEELGKKWAT FQGIGAV+GVAGATAVVVRTFDQ    TEIKY++SKAA     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREVQLA+TQDYEPYQAALVDKRKKRGGT G EEKEEEN
Sbjct:    7 GKGRVLRGGFSSTAHTGPGTSSGEELGKKWATFFQGIGAVVGVAGATAVVVRTFDQ----TEIKYIESKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREVQLAFTQDYEPYQAALVDKRKKRGGTSGSEEKEEEN 161
[Close]
BLAST of NO07G04350 vs. NCBI_GenBank
Match: EWM19937.1 (hypothetical protein Naga_102907g1 [Nannochloropsis gaditana])

HSP 1 Score: 151.4 bits (381), Expect = 3.000e-33
Identity = 136/170 (80.00%), Postives = 141/170 (82.94%), Query Frame = 0 
Query:   41 GKGRVLRGGFSSTVHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEMATEIKYVQSKA-----------AAEIAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREVQLAYTQDYEPYQAALVDKRKKRGGTGGLEEKEEEN 200
            GKGRVLRGGFSST HTGPGTS+GEELGKKWAT FQGIGAV+GVAGATAVVVRTFDQ    TEIKY++SKA                 XXXXXXXXXXXXX X XXXXXXXXXXXXXXXXXXXXXXXXXXXXX  VQLA+TQDYEPYQAALVDKRKKRGGT G EEKEEEN
Sbjct:    7 GKGRVLRGGFSSTAHTGPGTSNGEELGKKWATFFQGIGAVVGVAGATAVVVRTFDQ----TEIKYIESKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAXIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQLAFTQDYEPYQAALVDKRKKRGGTSGSEEKEEEN 172
[Close]
BLAST of NO07G04350 vs. NCBI_GenBank
Match: EWM19982.1 (hypothetical protein Naga_102464g1 [Nannochloropsis gaditana])

HSP 1 Score: 136.7 bits (343), Expect = 7.700e-29
Identity = 132/157 (84.08%), Postives = 135/157 (85.99%), Query Frame = 0 
Query:   61 SSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEMATEIKYVQSKAAAEIAQ------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREVQLAYTQDYEPYQAALVDKRKKRGGTGGLEEKEEEN 200
            SSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQ    TEIKY++SKAAAEIAQ                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREVQLA+TQDYEPYQAALVDKRKKRGGTGGLEEKEEEN
Sbjct:    2 SSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQ----TEIKYIESKAAAEIAQAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREVQLAFTQDYEPYQAALVDKRKKRGGTGGLEEKEEEN 154
[Close]
BLAST of NO07G04350 vs. NCBI_GenBank
Match: EWM22525.1 (hypothetical protein Naga_101794g1 [Nannochloropsis gaditana] >EWM22526.1 hypothetical protein Naga_101794g1 [Nannochloropsis gaditana])

HSP 1 Score: 136.7 bits (343), Expect = 7.700e-29
Identity = 69/75 (92.00%), Postives = 73/75 (97.33%), Query Frame = 0 
Query:   42 KGRVLRGGFSSTVHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEMATEIKYVQSKAAAEIAQ 117
            KGRVLRGGFSST HTGPGTSSGEELGKKWAT FQGIGAVLGVAGATAVVVRTFDQTEMATEI++++SKAAAEIAQ
Sbjct:   22 KGRVLRGGFSSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATAVVVRTFDQTEMATEIRHIESKAAAEIAQ 96
[Close]
BLAST of NO07G04350 vs. NCBI_GenBank
Match: EWM19984.1 (hypothetical protein Naga_102461g1 [Nannochloropsis gaditana])

HSP 1 Score: 78.6 bits (192), Expect = 2.500e-11
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 0 
Query:    1 MLASLLAAIINHDHQGDNMLRRFTAKAGAMARRGSTLPGPGK 43
            +LA LLAAIINHDHQGD MLRRFTAKAGAMARRGSTLPGPG+
Sbjct:   82 LLALLLAAIINHDHQGDKMLRRFTAKAGAMARRGSTLPGPGE 123
[Close]
BLAST of NO07G04350 vs. NCBI_GenBank
Match: EWM19959.1 (hypothetical protein Naga_102684g1 [Nannochloropsis gaditana])

HSP 1 Score: 77.0 bits (188), Expect = 7.300e-11
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = 0 
Query:    1 MLASLLAAIINHDHQGDNMLRRFTAKAGAMARRGSTLPGPGK 43
            MLA LLAAIINHDHQGD M RRFTAKAGAMARRGSTLPGPG+
Sbjct:   77 MLALLLAAIINHDHQGDKMPRRFTAKAGAMARRGSTLPGPGE 118
The following BLAST results are available for this feature:
BLAST of NO07G04350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20054.18.200e-5587.50hypothetical protein Naga_102018g1 [Nannochloropsi... [more]
EWM20166.12.600e-4874.89hypothetical protein Naga_101373g3 [Nannochloropsi... [more]
EWM20082.16.500e-4472.96hypothetical protein Naga_101888g1 [Nannochloropsi... [more]
EWM20146.13.900e-4180.50hypothetical protein Naga_101508g1 [Nannochloropsi... [more]
EWM19988.14.100e-3889.31hypothetical protein Naga_102432g1 [Nannochloropsi... [more]
EWM19937.13.000e-3380.00hypothetical protein Naga_102907g1 [Nannochloropsi... [more]
EWM19982.17.700e-2984.08hypothetical protein Naga_102464g1 [Nannochloropsi... [more]
EWM22525.17.700e-2992.00hypothetical protein Naga_101794g1 [Nannochloropsi... [more]
EWM19984.12.500e-1190.48hypothetical protein Naga_102461g1 [Nannochloropsi... [more]
EWM19959.17.300e-1190.48hypothetical protein Naga_102684g1 [Nannochloropsi... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G04350.1NO07G04350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G04350.1NO07G04350.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G04350 ID=NO07G04350|Name=NO07G04350|organism=Nannochloropsis oceanica|type=gene|length=811bp
ATGCTTGCCTCGCTGCTTGCTGCCATCATCAACCACGACCACCAGGGGGA
CAACATGCTTCGGCGCTTCACGGCGAAGGCTGGGGCCATGGCACGGAGAG
GGAGCACGCTTCCCGGGCCAGgtgaggtggcgtgtgtgatgcatttagga
agaactcgggcttgttgatggggtgggagtgcgcgttcagtgcacgcgac
cgcagtctggccgaggcatgttgattccccctttgtctgcgtgtctgtgt
cgtttgcgttgtaatctttgttatgcggaaaaggcccgcatcaaggtgtt
cacgcacacgcacatccatacacacccaacagGAAAGGGACGCGTGCTGC
GGGGGGGCTTCTCCTCGACAGTCCACACGGGGCCAGGCACGAGCAGTGGA
GAGGAGCTCGGTAAGAAGTGGGCGACAATCTTCCAAGGCATTGGCGCGGT
GCTAGGGGTTGCTGGTGCTACCGCTGTGGTCGTGCGTACTTTCGACCAGA
CTGAGATGGCGACGGAGATAAAGTATGTCCAGAGCAAGGCGGCGGCGGAG
ATCGCGCAGGCGAAAGCGGAGATCGCGCGTGTGGAGGACAAGGCGGCGGC
GGAGATCGCGCAGGCGAAAGCGGACGTCGCGCGTGTGGAGGACAAGCGGA
CAATGTCGGAAGTGTTTTGGAAGGCGGAGGTGGAGCGGTTCAAGCGCGAG
GTCCAACTGGCTTACACTCAAGACTATGAGCCTTATCAGGCCGCGCTTGT
GGACAAACGTAAAAAGAGGGGAGGAACCGGCGGATTGGAGGAGAAGGAAG
AGGAGAATTAG
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protein sequence of NO07G04350.1

>NO07G04350.1-protein ID=NO07G04350.1-protein|Name=NO07G04350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp
MLASLLAAIINHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGF
SSTVHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEMA
TEIKYVQSKAAAEIAQAKAEIARVEDKAAAEIAQAKADVARVEDKRTMSE
VFWKAEVERFKREVQLAYTQDYEPYQAALVDKRKKRGGTGGLEEKEEEN*
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Synonyms
Publications