NO07G04350.1, NO07G04350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G04350.1
Unique NameNO07G04350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length600
Alignment locationchr7:1214761..1215571 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1214761..1215571 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G04350.1 vs.
Match: EWM20054.1 (hypothetical protein Naga_102018g1 [Nannochloropsis gaditana])

HSP 1 Score: 339.0 bits (868), Expect = 1.000e-89
Identity = 187/206 (90.78%), Postives = 190/206 (92.23%), Query Frame = 0 
Query:    1 MLASLLAAIINHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTVHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEM-------ATEIKYVQSKAAAEIAQAKAEIARVEDKAAAEIAQAKADVARVEDKRTMSEVFWKAEVERFKREVQLAYTQDYEPYQAALVDKRKKRGGTGGLEEKEEEN 200
            MLA LLAAIINHDHQGD MLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSST HTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTE+       A EI  V+ KAAAEIAQAKAEIARVEDKAAAEIAQAKADVARVEDKRTMSEVFWKAEVERFKREVQLA+TQDYEPYQAALVDKRKKRGGT G EEKEEEN
Sbjct:   62 MLALLLAAIINHDHQGDKMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEIKYVQSKAAAEIARVEDKAAAEIAQAKAEIARVEDKAAAEIAQAKADVARVEDKRTMSEVFWKAEVERFKREVQLAFTQDYEPYQAALVDKRKKRGGTSGSEEKEEEN 267
The following BLAST results are available for this feature:
BLAST of NO07G04350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20054.11.000e-8990.78hypothetical protein Naga_102018g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G04350NO07G04350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G04350.1NO07G04350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G04350.1.cds1NO07G04350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04350.1.cds2NO07G04350.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G04350.1 ID=NO07G04350.1|Name=NO07G04350.1|organism=Nannochloropsis oceanica|type=mRNA|length=600bp
ATGCTTGCCTCGCTGCTTGCTGCCATCATCAACCACGACCACCAGGGGGA
CAACATGCTTCGGCGCTTCACGGCGAAGGCTGGGGCCATGGCACGGAGAG
GGAGCACGCTTCCCGGGCCAGGAAAGGGACGCGTGCTGCGGGGGGGCTTC
TCCTCGACAGTCCACACGGGGCCAGGCACGAGCAGTGGAGAGGAGCTCGG
TAAGAAGTGGGCGACAATCTTCCAAGGCATTGGCGCGGTGCTAGGGGTTG
CTGGTGCTACCGCTGTGGTCGTGCGTACTTTCGACCAGACTGAGATGGCG
ACGGAGATAAAGTATGTCCAGAGCAAGGCGGCGGCGGAGATCGCGCAGGC
GAAAGCGGAGATCGCGCGTGTGGAGGACAAGGCGGCGGCGGAGATCGCGC
AGGCGAAAGCGGACGTCGCGCGTGTGGAGGACAAGCGGACAATGTCGGAA
GTGTTTTGGAAGGCGGAGGTGGAGCGGTTCAAGCGCGAGGTCCAACTGGC
TTACACTCAAGACTATGAGCCTTATCAGGCCGCGCTTGTGGACAAACGTA
AAAAGAGGGGAGGAACCGGCGGATTGGAGGAGAAGGAAGAGGAGAATTAG
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protein sequence of NO07G04350.1

>NO07G04350.1-protein ID=NO07G04350.1-protein|Name=NO07G04350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp
MLASLLAAIINHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGF
SSTVHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEMA
TEIKYVQSKAAAEIAQAKAEIARVEDKAAAEIAQAKADVARVEDKRTMSE
VFWKAEVERFKREVQLAYTQDYEPYQAALVDKRKKRGGTGGLEEKEEEN*
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mRNA from alignment at chr7:1214761..1215571-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G04350.1 ID=NO07G04350.1|Name=NO07G04350.1|organism=Nannochloropsis oceanica|type=mRNA|length=811bp|location=Sequence derived from alignment at chr7:1214761..1215571- (Nannochloropsis oceanica)
ATGCTTGCCTCGCTGCTTGCTGCCATCATCAACCACGACCACCAGGGGGA
CAACATGCTTCGGCGCTTCACGGCGAAGGCTGGGGCCATGGCACGGAGAG
GGAGCACGCTTCCCGGGCCAGGTGAGGTGGCGTGTGTGATGCATTTAGGA
AGAACTCGGGCTTGTTGATGGGGTGGGAGTGCGCGTTCAGTGCACGCGAC
CGCAGTCTGGCCGAGGCATGTTGATTCCCCCTTTGTCTGCGTGTCTGTGT
CGTTTGCGTTGTAATCTTTGTTATGCGGAAAAGGCCCGCATCAAGGTGTT
CACGCACACGCACATCCATACACACCCAACAGGAAAGGGACGCGTGCTGC
GGGGGGGCTTCTCCTCGACAGTCCACACGGGGCCAGGCACGAGCAGTGGA
GAGGAGCTCGGTAAGAAGTGGGCGACAATCTTCCAAGGCATTGGCGCGGT
GCTAGGGGTTGCTGGTGCTACCGCTGTGGTCGTGCGTACTTTCGACCAGA
CTGAGATGGCGACGGAGATAAAGTATGTCCAGAGCAAGGCGGCGGCGGAG
ATCGCGCAGGCGAAAGCGGAGATCGCGCGTGTGGAGGACAAGGCGGCGGC
GGAGATCGCGCAGGCGAAAGCGGACGTCGCGCGTGTGGAGGACAAGCGGA
CAATGTCGGAAGTGTTTTGGAAGGCGGAGGTGGAGCGGTTCAAGCGCGAG
GTCCAACTGGCTTACACTCAAGACTATGAGCCTTATCAGGCCGCGCTTGT
GGACAAACGTAAAAAGAGGGGAGGAACCGGCGGATTGGAGGAGAAGGAAG
AGGAGAATTAG
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Coding sequence (CDS) from alignment at chr7:1214761..1215571-

>NO07G04350.1 ID=NO07G04350.1|Name=NO07G04350.1|organism=Nannochloropsis oceanica|type=CDS|length=600bp|location=Sequence derived from alignment at chr7:1214761..1215571- (Nannochloropsis oceanica)
ATGCTTGCCTCGCTGCTTGCTGCCATCATCAACCACGACCACCAGGGGGA
CAACATGCTTCGGCGCTTCACGGCGAAGGCTGGGGCCATGGCACGGAGAG
GGAGCACGCTTCCCGGGCCAGGAAAGGGACGCGTGCTGCGGGGGGGCTTC
TCCTCGACAGTCCACACGGGGCCAGGCACGAGCAGTGGAGAGGAGCTCGG
TAAGAAGTGGGCGACAATCTTCCAAGGCATTGGCGCGGTGCTAGGGGTTG
CTGGTGCTACCGCTGTGGTCGTGCGTACTTTCGACCAGACTGAGATGGCG
ACGGAGATAAAGTATGTCCAGAGCAAGGCGGCGGCGGAGATCGCGCAGGC
GAAAGCGGAGATCGCGCGTGTGGAGGACAAGGCGGCGGCGGAGATCGCGC
AGGCGAAAGCGGACGTCGCGCGTGTGGAGGACAAGCGGACAATGTCGGAA
GTGTTTTGGAAGGCGGAGGTGGAGCGGTTCAAGCGCGAGGTCCAACTGGC
TTACACTCAAGACTATGAGCCTTATCAGGCCGCGCTTGTGGACAAACGTA
AAAAGAGGGGAGGAACCGGCGGATTGGAGGAGAAGGAAGAGGAGAATTAG
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Synonyms
Publications